ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl09a03
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1dbj|AK101026.1| Oryza sativa (japonica cultivar-group) cDNA clon... 117 2e-23
2ref|NM_191169.1| Oryza sativa (japonica cultivar-group), predic... 111 1e-21
3dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 100 5e-18
4dbj|AP003768.3| Oryza sativa (japonica cultivar-group) genomic D... 100 5e-18
5dbj|AP003376.3| Oryza sativa (japonica cultivar-group) genomic D... 100 5e-18
6gb|AC069288.7| Homo sapiens BAC clone RP11-416J17 from 7, comple... 46 0.069
7gb|CP000272.1| Burkholderia xenovorans LB400 chromosome 3, compl... 44 0.27
8emb|AL591788.1|SME591788 Sinorhizobium meliloti 1021 complete ch... 42 1.1
9gb|AC130404.8| Homo sapiens 12 BAC RP11-337L12 (Roswell Park Can... 42 1.1
10gb|AC139767.5| Homo sapiens 12 BAC RP11-572N16 (Roswell Park Can... 42 1.1
11gb|BC050848.1| Mus musculus claspin homolog (Xenopus laevis), mR... 42 1.1
12ref|NM_175554.3| Mus musculus claspin homolog (Xenopus laevis) (... 42 1.1
13emb|AL606935.8| Mouse DNA sequence from clone RP23-204N19 on chr... 42 1.1
14gb|CP000096.1| Pelodictyon luteolum DSM 273, complete genome 40 4.2
15gb|CP000089.1| Dechloromonas aromatica RCB, complete genome 40 4.2
16emb|AL954245.1| Pan troglodytes chromosome 22 clone PTB-047B05 m... 40 4.2
17gb|AC108856.20| Mus musculus chromosome 8, clone RP24-355A11, co... 40 4.2
18dbj|AB001523.1| Homo sapiens gene for TMEM1 and PWP2,complete an... 40 4.2
19dbj|AP001753.1| Homo sapiens genomic DNA, chromosome 21q, sectio... 40 4.2
20gb|CP000155.1| Hahella chejuensis KCTC 2396, complete genome 40 4.2
21dbj|AP001054.1| Homo sapiens genomic DNA, chromosome 21, clone:K... 40 4.2

>dbj|AK101026.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023150E15, full
           insert sequence
          Length = 3313

 Score =  117 bits (59), Expect = 2e-23
 Identities = 148/175 (84%), Gaps = 2/175 (1%)
 Strand = Plus / Plus

                                                                       
Query: 150 cccggatcgaccggcattccg-gccccgtgcacgctccagccctggt-ggtgaggcatgg 207
           ||||||||| ||||||||||  |||||| || |||||| |||| ||  ||||||||||||
Sbjct: 153 cccggatcggccggcattccccgccccgcgcgcgctccggccccgggcggtgaggcatgg 212

                                                                       
Query: 208 ggaccttcggtggccagttcgaggacttccatgcggacgaccggcgtgcggaggtgatag 267
           ||||  |    ||| ||| |||||||||| |||||| | | |||||||||||||||||||
Sbjct: 213 ggacggtgaacggcgagtacgaggacttcgatgcggccaatcggcgtgcggaggtgatag 272

                                                                  
Query: 268 attggctgggcgggctgctgccggagttcgatttaccgctggattcttcagacga 322
           ||||||| |||||| | ||||||||||||||||| ||| |||||||||| |||||
Sbjct: 273 attggctcggcgggttactgccggagttcgatttgccgttggattcttcggacga 327



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>ref|NM_191169.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 2433

 Score =  111 bits (56), Expect = 1e-21
 Identities = 86/96 (89%)
 Strand = Plus / Plus

                                                                       
Query: 227 cgaggacttccatgcggacgaccggcgtgcggaggtgatagattggctgggcgggctgct 286
           |||||||||| |||||| | | |||||||||||||||||||||||||| |||||| | ||
Sbjct: 24  cgaggacttcgatgcggccaatcggcgtgcggaggtgatagattggctcggcgggttact 83

                                               
Query: 287 gccggagttcgatttaccgctggattcttcagacga 322
           ||||||||||||||| ||| |||||||||| |||||
Sbjct: 84  gccggagttcgatttgccgttggattcttcggacga 119



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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 99.6 bits (50), Expect = 5e-18
 Identities = 68/74 (91%)
 Strand = Plus / Plus

                                                                            
Query: 249      cggcgtgcggaggtgatagattggctgggcgggctgctgccggagttcgatttaccgctg 308
                |||||||||||||||||||||||||| |||||| | ||||||||||||||||| ||| ||
Sbjct: 31093354 cggcgtgcggaggtgatagattggctcggcgggttactgccggagttcgatttgccgttg 31093413

                              
Query: 309      gattcttcagacga 322
                |||||||| |||||
Sbjct: 31093414 gattcttcggacga 31093427



 Score = 40.1 bits (20), Expect = 4.2
 Identities = 55/64 (85%), Gaps = 2/64 (3%)
 Strand = Plus / Plus

                                                                            
Query: 150      cccggatcgaccggcattccg-gccccgtgcacgctccagccctggt-ggtgaggcatgg 207
                ||||||||| ||||||||||  |||||| || |||||| |||| ||  ||||||||||||
Sbjct: 31092821 cccggatcggccggcattccccgccccgcgcgcgctccggccccgggcggtgaggcatgg 31092880

                    
Query: 208      ggac 211
                ||||
Sbjct: 31092881 ggac 31092884



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>dbj|AP003768.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
              clone:P0439E07
          Length = 176486

 Score = 99.6 bits (50), Expect = 5e-18
 Identities = 68/74 (91%)
 Strand = Plus / Plus

                                                                          
Query: 249    cggcgtgcggaggtgatagattggctgggcgggctgctgccggagttcgatttaccgctg 308
              |||||||||||||||||||||||||| |||||| | ||||||||||||||||| ||| ||
Sbjct: 150333 cggcgtgcggaggtgatagattggctcggcgggttactgccggagttcgatttgccgttg 150392

                            
Query: 309    gattcttcagacga 322
              |||||||| |||||
Sbjct: 150393 gattcttcggacga 150406



 Score = 40.1 bits (20), Expect = 4.2
 Identities = 55/64 (85%), Gaps = 2/64 (3%)
 Strand = Plus / Plus

                                                                          
Query: 150    cccggatcgaccggcattccg-gccccgtgcacgctccagccctggt-ggtgaggcatgg 207
              ||||||||| ||||||||||  |||||| || |||||| |||| ||  ||||||||||||
Sbjct: 149800 cccggatcggccggcattccccgccccgcgcgcgctccggccccgggcggtgaggcatgg 149859

                  
Query: 208    ggac 211
              ||||
Sbjct: 149860 ggac 149863



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>dbj|AP003376.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
             clone:OSJNBa0014K08
          Length = 177263

 Score = 99.6 bits (50), Expect = 5e-18
 Identities = 68/74 (91%)
 Strand = Plus / Plus

                                                                         
Query: 249   cggcgtgcggaggtgatagattggctgggcgggctgctgccggagttcgatttaccgctg 308
             |||||||||||||||||||||||||| |||||| | ||||||||||||||||| ||| ||
Sbjct: 19699 cggcgtgcggaggtgatagattggctcggcgggttactgccggagttcgatttgccgttg 19758

                           
Query: 309   gattcttcagacga 322
             |||||||| |||||
Sbjct: 19759 gattcttcggacga 19772



 Score = 40.1 bits (20), Expect = 4.2
 Identities = 55/64 (85%), Gaps = 2/64 (3%)
 Strand = Plus / Plus

                                                                         
Query: 150   cccggatcgaccggcattccg-gccccgtgcacgctccagccctggt-ggtgaggcatgg 207
             ||||||||| ||||||||||  |||||| || |||||| |||| ||  ||||||||||||
Sbjct: 19166 cccggatcggccggcattccccgccccgcgcgcgctccggccccgggcggtgaggcatgg 19225

                 
Query: 208   ggac 211
             ||||
Sbjct: 19226 ggac 19229



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>gb|AC069288.7| Homo sapiens BAC clone RP11-416J17 from 7, complete sequence
          Length = 145709

 Score = 46.1 bits (23), Expect = 0.069
 Identities = 32/35 (91%)
 Strand = Plus / Minus

                                                
Query: 169   cggccccgtgcacgctccagccctggtggtgaggc 203
             |||||| | ||||||| ||||||||||||||||||
Sbjct: 85079 cggccctgggcacgctgcagccctggtggtgaggc 85045



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>gb|CP000272.1| Burkholderia xenovorans LB400 chromosome 3, complete sequence
          Length = 1471779

 Score = 44.1 bits (22), Expect = 0.27
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 124   atccggcgcctgccccgccgga 145
             ||||||||||||||||||||||
Sbjct: 89659 atccggcgcctgccccgccgga 89638



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>emb|AL591788.1|SME591788 Sinorhizobium meliloti 1021 complete chromosome; segment 7/12
          Length = 306250

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 150    cccggatcgaccggcattccg 170
              |||||||||||||||||||||
Sbjct: 113516 cccggatcgaccggcattccg 113536



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>gb|AC130404.8| Homo sapiens 12 BAC RP11-337L12 (Roswell Park Cancer Institute
           Human BAC Library) complete sequence
          Length = 135653

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 49  gaaaacccaaaccaaaagcccccag 73
           ||||||||||||||||||| |||||
Sbjct: 233 gaaaacccaaaccaaaagcacccag 257



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>gb|AC139767.5| Homo sapiens 12 BAC RP11-572N16 (Roswell Park Cancer Institute Human
            BAC Library) complete sequence
          Length = 11901

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 49   gaaaacccaaaccaaaagcccccag 73
            ||||||||||||||||||| |||||
Sbjct: 1772 gaaaacccaaaccaaaagcacccag 1748



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>gb|BC050848.1| Mus musculus claspin homolog (Xenopus laevis), mRNA (cDNA clone
            MGC:59414 IMAGE:6507692), complete cds
          Length = 4964

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 50   aaaacccaaaccaaaagcccc 70
            |||||||||||||||||||||
Sbjct: 4801 aaaacccaaaccaaaagcccc 4781



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>ref|NM_175554.3| Mus musculus claspin homolog (Xenopus laevis) (Clspn), mRNA
          Length = 4964

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 50   aaaacccaaaccaaaagcccc 70
            |||||||||||||||||||||
Sbjct: 4801 aaaacccaaaccaaaagcccc 4781



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>emb|AL606935.8| Mouse DNA sequence from clone RP23-204N19 on chromosome 4, complete
              sequence
          Length = 213391

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 50     aaaacccaaaccaaaagcccc 70
              |||||||||||||||||||||
Sbjct: 143222 aaaacccaaaccaaaagcccc 143202



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>gb|CP000096.1| Pelodictyon luteolum DSM 273, complete genome
          Length = 2364842

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 26      gagaggggggagcggagcgg 45
               ||||||||||||||||||||
Sbjct: 1542023 gagaggggggagcggagcgg 1542004



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>gb|CP000089.1| Dechloromonas aromatica RCB, complete genome
          Length = 4501104

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 218     tggccagttcgaggacttcc 237
               ||||||||||||||||||||
Sbjct: 1211247 tggccagttcgaggacttcc 1211266



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>emb|AL954245.1| Pan troglodytes chromosome 22 clone PTB-047B05 map 22q22.3, complete
             sequence
          Length = 176622

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 27/28 (96%), Gaps = 1/28 (3%)
 Strand = Plus / Plus

                                         
Query: 49    gaaaacccaaaccaaaagc-ccccagaa 75
             ||||||||||||||||||| ||||||||
Sbjct: 37059 gaaaacccaaaccaaaagctccccagaa 37086



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>gb|AC108856.20| Mus musculus chromosome 8, clone RP24-355A11, complete sequence
          Length = 203330

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 50    aaaacccaaaccaaaagcccccagaact 77
             |||||| |||||||||||||||| ||||
Sbjct: 74638 aaaaccaaaaccaaaagcccccaaaact 74611



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>dbj|AB001523.1| Homo sapiens gene for TMEM1 and PWP2,complete and partial cds
          Length = 122638

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 27/28 (96%), Gaps = 1/28 (3%)
 Strand = Plus / Plus

                                        
Query: 49   gaaaacccaaaccaaaagc-ccccagaa 75
            ||||||||||||||||||| ||||||||
Sbjct: 7747 gaaaacccaaaccaaaagctccccagaa 7774



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>dbj|AP001753.1| Homo sapiens genomic DNA, chromosome 21q, section 97/105
          Length = 340000

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 27/28 (96%), Gaps = 1/28 (3%)
 Strand = Plus / Plus

                                         
Query: 49    gaaaacccaaaccaaaagc-ccccagaa 75
             ||||||||||||||||||| ||||||||
Sbjct: 49282 gaaaacccaaaccaaaagctccccagaa 49309



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>gb|CP000155.1| Hahella chejuensis KCTC 2396, complete genome
          Length = 7215267

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 83     tccgcctcccgcattgcttc 102
              ||||||||||||||||||||
Sbjct: 656093 tccgcctcccgcattgcttc 656074



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>dbj|AP001054.1| Homo sapiens genomic DNA, chromosome 21, clone:KB218C10, MX1-D21S171
              region, complete sequence
          Length = 120871

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 27/28 (96%), Gaps = 1/28 (3%)
 Strand = Plus / Plus

                                          
Query: 49     gaaaacccaaaccaaaagc-ccccagaa 75
              ||||||||||||||||||| ||||||||
Sbjct: 100596 gaaaacccaaaccaaaagctccccagaa 100623


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,910,277
Number of Sequences: 3902068
Number of extensions: 1910277
Number of successful extensions: 39269
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 39135
Number of HSP's gapped (non-prelim): 138
length of query: 322
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 300
effective length of database: 17,147,199,772
effective search space: 5144159931600
effective search space used: 5144159931600
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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