Clone Name | bastl09a03 |
---|---|
Clone Library Name | barley_pub |
>dbj|AK101026.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023150E15, full insert sequence Length = 3313 Score = 117 bits (59), Expect = 2e-23 Identities = 148/175 (84%), Gaps = 2/175 (1%) Strand = Plus / Plus Query: 150 cccggatcgaccggcattccg-gccccgtgcacgctccagccctggt-ggtgaggcatgg 207 ||||||||| |||||||||| |||||| || |||||| |||| || |||||||||||| Sbjct: 153 cccggatcggccggcattccccgccccgcgcgcgctccggccccgggcggtgaggcatgg 212 Query: 208 ggaccttcggtggccagttcgaggacttccatgcggacgaccggcgtgcggaggtgatag 267 |||| | ||| ||| |||||||||| |||||| | | ||||||||||||||||||| Sbjct: 213 ggacggtgaacggcgagtacgaggacttcgatgcggccaatcggcgtgcggaggtgatag 272 Query: 268 attggctgggcgggctgctgccggagttcgatttaccgctggattcttcagacga 322 ||||||| |||||| | ||||||||||||||||| ||| |||||||||| ||||| Sbjct: 273 attggctcggcgggttactgccggagttcgatttgccgttggattcttcggacga 327
>ref|NM_191169.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 2433 Score = 111 bits (56), Expect = 1e-21 Identities = 86/96 (89%) Strand = Plus / Plus Query: 227 cgaggacttccatgcggacgaccggcgtgcggaggtgatagattggctgggcgggctgct 286 |||||||||| |||||| | | |||||||||||||||||||||||||| |||||| | || Sbjct: 24 cgaggacttcgatgcggccaatcggcgtgcggaggtgatagattggctcggcgggttact 83 Query: 287 gccggagttcgatttaccgctggattcttcagacga 322 ||||||||||||||| ||| |||||||||| ||||| Sbjct: 84 gccggagttcgatttgccgttggattcttcggacga 119
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 99.6 bits (50), Expect = 5e-18 Identities = 68/74 (91%) Strand = Plus / Plus Query: 249 cggcgtgcggaggtgatagattggctgggcgggctgctgccggagttcgatttaccgctg 308 |||||||||||||||||||||||||| |||||| | ||||||||||||||||| ||| || Sbjct: 31093354 cggcgtgcggaggtgatagattggctcggcgggttactgccggagttcgatttgccgttg 31093413 Query: 309 gattcttcagacga 322 |||||||| ||||| Sbjct: 31093414 gattcttcggacga 31093427 Score = 40.1 bits (20), Expect = 4.2 Identities = 55/64 (85%), Gaps = 2/64 (3%) Strand = Plus / Plus Query: 150 cccggatcgaccggcattccg-gccccgtgcacgctccagccctggt-ggtgaggcatgg 207 ||||||||| |||||||||| |||||| || |||||| |||| || |||||||||||| Sbjct: 31092821 cccggatcggccggcattccccgccccgcgcgcgctccggccccgggcggtgaggcatgg 31092880 Query: 208 ggac 211 |||| Sbjct: 31092881 ggac 31092884
>dbj|AP003768.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0439E07 Length = 176486 Score = 99.6 bits (50), Expect = 5e-18 Identities = 68/74 (91%) Strand = Plus / Plus Query: 249 cggcgtgcggaggtgatagattggctgggcgggctgctgccggagttcgatttaccgctg 308 |||||||||||||||||||||||||| |||||| | ||||||||||||||||| ||| || Sbjct: 150333 cggcgtgcggaggtgatagattggctcggcgggttactgccggagttcgatttgccgttg 150392 Query: 309 gattcttcagacga 322 |||||||| ||||| Sbjct: 150393 gattcttcggacga 150406 Score = 40.1 bits (20), Expect = 4.2 Identities = 55/64 (85%), Gaps = 2/64 (3%) Strand = Plus / Plus Query: 150 cccggatcgaccggcattccg-gccccgtgcacgctccagccctggt-ggtgaggcatgg 207 ||||||||| |||||||||| |||||| || |||||| |||| || |||||||||||| Sbjct: 149800 cccggatcggccggcattccccgccccgcgcgcgctccggccccgggcggtgaggcatgg 149859 Query: 208 ggac 211 |||| Sbjct: 149860 ggac 149863
>dbj|AP003376.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:OSJNBa0014K08 Length = 177263 Score = 99.6 bits (50), Expect = 5e-18 Identities = 68/74 (91%) Strand = Plus / Plus Query: 249 cggcgtgcggaggtgatagattggctgggcgggctgctgccggagttcgatttaccgctg 308 |||||||||||||||||||||||||| |||||| | ||||||||||||||||| ||| || Sbjct: 19699 cggcgtgcggaggtgatagattggctcggcgggttactgccggagttcgatttgccgttg 19758 Query: 309 gattcttcagacga 322 |||||||| ||||| Sbjct: 19759 gattcttcggacga 19772 Score = 40.1 bits (20), Expect = 4.2 Identities = 55/64 (85%), Gaps = 2/64 (3%) Strand = Plus / Plus Query: 150 cccggatcgaccggcattccg-gccccgtgcacgctccagccctggt-ggtgaggcatgg 207 ||||||||| |||||||||| |||||| || |||||| |||| || |||||||||||| Sbjct: 19166 cccggatcggccggcattccccgccccgcgcgcgctccggccccgggcggtgaggcatgg 19225 Query: 208 ggac 211 |||| Sbjct: 19226 ggac 19229
>gb|AC069288.7| Homo sapiens BAC clone RP11-416J17 from 7, complete sequence Length = 145709 Score = 46.1 bits (23), Expect = 0.069 Identities = 32/35 (91%) Strand = Plus / Minus Query: 169 cggccccgtgcacgctccagccctggtggtgaggc 203 |||||| | ||||||| |||||||||||||||||| Sbjct: 85079 cggccctgggcacgctgcagccctggtggtgaggc 85045
>gb|CP000272.1| Burkholderia xenovorans LB400 chromosome 3, complete sequence Length = 1471779 Score = 44.1 bits (22), Expect = 0.27 Identities = 22/22 (100%) Strand = Plus / Minus Query: 124 atccggcgcctgccccgccgga 145 |||||||||||||||||||||| Sbjct: 89659 atccggcgcctgccccgccgga 89638
>emb|AL591788.1|SME591788 Sinorhizobium meliloti 1021 complete chromosome; segment 7/12 Length = 306250 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 150 cccggatcgaccggcattccg 170 ||||||||||||||||||||| Sbjct: 113516 cccggatcgaccggcattccg 113536
>gb|AC130404.8| Homo sapiens 12 BAC RP11-337L12 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 135653 Score = 42.1 bits (21), Expect = 1.1 Identities = 24/25 (96%) Strand = Plus / Plus Query: 49 gaaaacccaaaccaaaagcccccag 73 ||||||||||||||||||| ||||| Sbjct: 233 gaaaacccaaaccaaaagcacccag 257
>gb|AC139767.5| Homo sapiens 12 BAC RP11-572N16 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 11901 Score = 42.1 bits (21), Expect = 1.1 Identities = 24/25 (96%) Strand = Plus / Minus Query: 49 gaaaacccaaaccaaaagcccccag 73 ||||||||||||||||||| ||||| Sbjct: 1772 gaaaacccaaaccaaaagcacccag 1748
>gb|BC050848.1| Mus musculus claspin homolog (Xenopus laevis), mRNA (cDNA clone MGC:59414 IMAGE:6507692), complete cds Length = 4964 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 50 aaaacccaaaccaaaagcccc 70 ||||||||||||||||||||| Sbjct: 4801 aaaacccaaaccaaaagcccc 4781
>ref|NM_175554.3| Mus musculus claspin homolog (Xenopus laevis) (Clspn), mRNA Length = 4964 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 50 aaaacccaaaccaaaagcccc 70 ||||||||||||||||||||| Sbjct: 4801 aaaacccaaaccaaaagcccc 4781
>emb|AL606935.8| Mouse DNA sequence from clone RP23-204N19 on chromosome 4, complete sequence Length = 213391 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 50 aaaacccaaaccaaaagcccc 70 ||||||||||||||||||||| Sbjct: 143222 aaaacccaaaccaaaagcccc 143202
>gb|CP000096.1| Pelodictyon luteolum DSM 273, complete genome Length = 2364842 Score = 40.1 bits (20), Expect = 4.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 26 gagaggggggagcggagcgg 45 |||||||||||||||||||| Sbjct: 1542023 gagaggggggagcggagcgg 1542004
>gb|CP000089.1| Dechloromonas aromatica RCB, complete genome Length = 4501104 Score = 40.1 bits (20), Expect = 4.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 218 tggccagttcgaggacttcc 237 |||||||||||||||||||| Sbjct: 1211247 tggccagttcgaggacttcc 1211266
>emb|AL954245.1| Pan troglodytes chromosome 22 clone PTB-047B05 map 22q22.3, complete sequence Length = 176622 Score = 40.1 bits (20), Expect = 4.2 Identities = 27/28 (96%), Gaps = 1/28 (3%) Strand = Plus / Plus Query: 49 gaaaacccaaaccaaaagc-ccccagaa 75 ||||||||||||||||||| |||||||| Sbjct: 37059 gaaaacccaaaccaaaagctccccagaa 37086
>gb|AC108856.20| Mus musculus chromosome 8, clone RP24-355A11, complete sequence Length = 203330 Score = 40.1 bits (20), Expect = 4.2 Identities = 26/28 (92%) Strand = Plus / Minus Query: 50 aaaacccaaaccaaaagcccccagaact 77 |||||| |||||||||||||||| |||| Sbjct: 74638 aaaaccaaaaccaaaagcccccaaaact 74611
>dbj|AB001523.1| Homo sapiens gene for TMEM1 and PWP2,complete and partial cds Length = 122638 Score = 40.1 bits (20), Expect = 4.2 Identities = 27/28 (96%), Gaps = 1/28 (3%) Strand = Plus / Plus Query: 49 gaaaacccaaaccaaaagc-ccccagaa 75 ||||||||||||||||||| |||||||| Sbjct: 7747 gaaaacccaaaccaaaagctccccagaa 7774
>dbj|AP001753.1| Homo sapiens genomic DNA, chromosome 21q, section 97/105 Length = 340000 Score = 40.1 bits (20), Expect = 4.2 Identities = 27/28 (96%), Gaps = 1/28 (3%) Strand = Plus / Plus Query: 49 gaaaacccaaaccaaaagc-ccccagaa 75 ||||||||||||||||||| |||||||| Sbjct: 49282 gaaaacccaaaccaaaagctccccagaa 49309
>gb|CP000155.1| Hahella chejuensis KCTC 2396, complete genome Length = 7215267 Score = 40.1 bits (20), Expect = 4.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 83 tccgcctcccgcattgcttc 102 |||||||||||||||||||| Sbjct: 656093 tccgcctcccgcattgcttc 656074
>dbj|AP001054.1| Homo sapiens genomic DNA, chromosome 21, clone:KB218C10, MX1-D21S171 region, complete sequence Length = 120871 Score = 40.1 bits (20), Expect = 4.2 Identities = 27/28 (96%), Gaps = 1/28 (3%) Strand = Plus / Plus Query: 49 gaaaacccaaaccaaaagc-ccccagaa 75 ||||||||||||||||||| |||||||| Sbjct: 100596 gaaaacccaaaccaaaagctccccagaa 100623 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 1,910,277 Number of Sequences: 3902068 Number of extensions: 1910277 Number of successful extensions: 39269 Number of sequences better than 10.0: 21 Number of HSP's better than 10.0 without gapping: 17 Number of HSP's successfully gapped in prelim test: 4 Number of HSP's that attempted gapping in prelim test: 39135 Number of HSP's gapped (non-prelim): 138 length of query: 322 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 300 effective length of database: 17,147,199,772 effective search space: 5144159931600 effective search space used: 5144159931600 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)