>MB3R1_ARATH (Q9S7G7) Myb-related protein 3R-1 (Plant c-MYB-like protein 1)|
           (Protein PC-MYB1) (PC-MYB1)
          Length = 776

 Score = 45.8 bits (107), Expect = 4e-05
 Identities = 22/34 (64%), Positives = 26/34 (76%)
 Frame = +1

Query: 325 GPQKGRLSNGRTTGPARRSTKGNWTLEEDDILRK 426
           G  KG+   GRT+GPARRSTKG WT EED++L K
Sbjct: 17  GDLKGK--QGRTSGPARRSTKGQWTPEEDEVLCK 48

>IRF3_CHICK (Q90643) Interferon regulatory factor 3 (IRF-3)|
          Length = 491

 Score = 33.5 bits (75), Expect = 0.21
 Identities = 18/53 (33%), Positives = 27/53 (50%), Gaps = 6/53 (11%)
 Frame = +1

Query: 205 EWKLNFRCSLTMTN------DKGRASKKVAEGSSSALAVPDGRASSGPQKGRL 345
           +WK NFRC+L  T+      D+ + +    +  + A  VP+ R S GP  G L
Sbjct: 80  KWKTNFRCALRSTHMFMLLEDRSKCNDDPHKVYAVASGVPNDRGSGGPVAGAL 132

>MRE11_METTH (O26641) DNA double-strand break repair protein mre11|
          Length = 587

 Score = 32.3 bits (72), Expect = 0.48
 Identities = 20/57 (35%), Positives = 32/57 (56%), Gaps = 7/57 (12%)
 Frame = +3

Query: 78  MRRVGSAGEPM-------TYSPSATQLLEGLAGGFEIIMILRPFPGFCYRVEIEFSV 227
           +RRV  AG P+        YSPS+T +++ L     I  ++RP PG   ++ +EF+V
Sbjct: 236 LRRVREAGVPIYVNYGSHDYSPSSTSMIDILESAGVIDKVVRPIPG--KKLGLEFTV 290

>MYBH_DICDI (P34127) Myb-like protein (Fragment)|
          Length = 451

 Score = 32.0 bits (71), Expect = 0.62
 Identities = 14/28 (50%), Positives = 17/28 (60%)
 Frame = +1

Query: 343 LSNGRTTGPARRSTKGNWTLEEDDILRK 426
           +SN  T    ++ TKG WT EED IL K
Sbjct: 135 ISNNNTPKVEKKKTKGKWTSEEDQILIK 162

>Y1794_HAEDU (Q7VKS7) UPF0301 protein HD_1794|
          Length = 186

 Score = 30.4 bits (67), Expect = 1.8
 Identities = 16/51 (31%), Positives = 23/51 (45%)
 Frame = +3

Query: 201 YRVEIEFSVFTHNDK*QGKGFKEGR*GFILCFGCA*WKSQQWTSEGAVVQW 353
           Y+V  + ++ T  D     G +     FI+C GC+ WK  Q   E A   W
Sbjct: 98  YKVTDDITLTTSGDVLDSFGTQTAPEKFIVCLGCSTWKPHQLEQEIAQNYW 148

>PYR1_EMENI (O93937) Protein pyrABCN [Includes: Glutamine-dependent|
            carbamoyl-phosphate (EC 6.3.5.5); Aspartate
            carbamoyltransferase (EC 2.1.3.2)]
          Length = 2275

 Score = 30.0 bits (66), Expect = 2.4
 Identities = 20/62 (32%), Positives = 28/62 (45%)
 Frame = -3

Query: 317  ALPSGTAKAEDEPSATFFEALPLSFVIVSEHRKFNFHSVAEAREGSKNHYNFKPPSESFK 138
            ++P   A  +  P+A   EALPL F  VSE R      +A   E  K  +     S+S  
Sbjct: 1761 SIPYQLAGEKGSPAAGIAEALPLLFTAVSEGRLTVEDIIARLYENPKKIFELHDQSDSSV 1820

Query: 137  EL 132
            E+
Sbjct: 1821 EV 1822

>NDPA_PHOLL (P60054) Nucleoid-associated protein ndpA|
          Length = 334

 Score = 30.0 bits (66), Expect = 2.4
 Identities = 17/48 (35%), Positives = 24/48 (50%)
 Frame = +1

Query: 202 TEWKLNFRCSLTMTNDKGRASKKVAEGSSSALAVPDGRASSGPQKGRL 345
           TEW+ N   S  +T  KGR  +KV++     LA  +G  +    KG L
Sbjct: 155 TEWETNPESSRYLTFLKGRVGRKVSDFFMDFLAASEGMNAKVQNKGLL 202

>RNF19_HUMAN (Q9NV58) RING finger protein 19 (Dorfin) (Double ring-finger|
           protein) (p38 protein)
          Length = 838

 Score = 30.0 bits (66), Expect = 2.4
 Identities = 17/54 (31%), Positives = 28/54 (51%)
 Frame = +1

Query: 247 DKGRASKKVAEGSSSALAVPDGRASSGPQKGRLSNGRTTGPARRSTKGNWTLEE 408
           D G A++  A GSSS L  P+G++S+       + G+ +   +   KGN  + E
Sbjct: 637 DDGSATRSYAGGSSSGL--PEGKSSATKWSKEATAGKKSKSGKLRKKGNMKINE 688

>GLMU_PSEU2 (Q4ZL26) Bifunctional protein glmU [Includes:|
           UDP-N-acetylglucosamine pyrophosphorylase (EC 2.7.7.23)
           (N-acetylglucosamine-1-phosphate uridyltransferase);
           Glucosamine-1-phosphate N-acetyltransferase (EC
           2.3.1.157)]
          Length = 455

 Score = 29.6 bits (65), Expect = 3.1
 Identities = 17/47 (36%), Positives = 22/47 (46%)
 Frame = +1

Query: 226 CSLTMTNDKGRASKKVAEGSSSALAVPDGRASSGPQKGRLSNGRTTG 366
           C++    D   A K + EG++  LAVP   A      GRLSN    G
Sbjct: 147 CAIVEHKDASDAQKAITEGNTGILAVP--AAHLADWLGRLSNNNAQG 191

>CBP1_CAEEL (P34545) Protein cbp-1|
          Length = 2056

 Score = 29.3 bits (64), Expect = 4.0
 Identities = 16/52 (30%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
 Frame = -1

Query: 424  SEVYHPLLGSNSPWSSALLDPLSSHWTTAPSEVHCWLFHQAQPKQRM-NPQR 272
            ++VYH LL     ++  L   ++  W   PSE   ++FH   P+Q++  P+R
Sbjct: 1238 TDVYHELLLGYLDYAKMLGYTMAHIWACPPSEGDDYIFHCHPPEQKIPKPKR 1289

>GLMU_PSEF5 (Q4K3B1) Bifunctional protein glmU [Includes:|
           UDP-N-acetylglucosamine pyrophosphorylase (EC 2.7.7.23)
           (N-acetylglucosamine-1-phosphate uridyltransferase);
           Glucosamine-1-phosphate N-acetyltransferase (EC
           2.3.1.157)]
          Length = 455

 Score = 29.3 bits (64), Expect = 4.0
 Identities = 16/40 (40%), Positives = 21/40 (52%)
 Frame = +1

Query: 247 DKGRASKKVAEGSSSALAVPDGRASSGPQKGRLSNGRTTG 366
           D   A++ + EG++  LAVP  R   G   GRLSN    G
Sbjct: 154 DADEATRAITEGNTGILAVPGKRL--GDWTGRLSNNNAQG 191

>TINF2_MOUSE (Q9QXG9) TERF1-interacting nuclear factor 2 (TRF1-interacting|
           nuclear protein 2)
          Length = 341

 Score = 29.3 bits (64), Expect = 4.0
 Identities = 17/55 (30%), Positives = 28/55 (50%), Gaps = 2/55 (3%)
 Frame = -1

Query: 397 SNSPWSSALLDPL--SSHWTTAPSEVHCWLFHQAQPKQRMNPQRPSLKPFPCHLS 239
           S++  S  L++P+  S H  T P+      FH   PK ++ P +P+    P HL+
Sbjct: 193 SSTSGSGNLIEPMEESPHQQTRPA------FHSPLPKAKLGPHQPASLEHPEHLA 241

>RIMB1_RAT (Q9JIR0) Peripheral-type benzodiazepine receptor-associated protein 1|
            (PRAX-1) (RIM-binding protein 1) (RIM-BP1)
          Length = 1847

 Score = 29.3 bits (64), Expect = 4.0
 Identities = 17/57 (29%), Positives = 29/57 (50%)
 Frame = +1

Query: 256  RASKKVAEGSSSALAVPDGRASSGPQKGRLSNGRTTGPARRSTKGNWTLEEDDILRK 426
            R   KV  GS++ L +P        ++GR + GRT  P  R+T+   +  +D+  R+
Sbjct: 1529 RGPVKVNSGSNTYLRLPAWEKGEPERRGRSAIGRTKEPPSRATETGESRGQDNSGRR 1585

>GLMU_PSE14 (Q48BG7) Bifunctional protein glmU [Includes:|
           UDP-N-acetylglucosamine pyrophosphorylase (EC 2.7.7.23)
           (N-acetylglucosamine-1-phosphate uridyltransferase);
           Glucosamine-1-phosphate N-acetyltransferase (EC
           2.3.1.157)]
          Length = 455

 Score = 28.9 bits (63), Expect = 5.3
 Identities = 16/47 (34%), Positives = 22/47 (46%)
 Frame = +1

Query: 226 CSLTMTNDKGRASKKVAEGSSSALAVPDGRASSGPQKGRLSNGRTTG 366
           C++    D     K + EG++  LAVP  R +     GRLSN    G
Sbjct: 147 CAIVEHKDANDVQKAITEGNTGILAVPAKRLAD--WLGRLSNNNAQG 191

>NDPA_ERWCT (Q6D3J7) Nucleoid-associated protein ndpA|
          Length = 335

 Score = 28.5 bits (62), Expect = 6.9
 Identities = 15/48 (31%), Positives = 24/48 (50%)
 Frame = +1

Query: 202 TEWKLNFRCSLTMTNDKGRASKKVAEGSSSALAVPDGRASSGPQKGRL 345
           TEW+ N   +  +T  KGR  +KV++     LA  +G  +    +G L
Sbjct: 154 TEWETNPESTRYLTFLKGRVGRKVSDFFMDFLAASEGLDTKAQNRGLL 201

>NDPA_SALTY (P67714) Nucleoid-associated protein ndpA|
          Length = 334

 Score = 28.5 bits (62), Expect = 6.9
 Identities = 15/48 (31%), Positives = 24/48 (50%)
 Frame = +1

Query: 202 TEWKLNFRCSLTMTNDKGRASKKVAEGSSSALAVPDGRASSGPQKGRL 345
           TEW+ N + +  +T  KGR  +KVA+     L   +G  +    +G L
Sbjct: 154 TEWETNPQSTRYLTFLKGRVGRKVADFFMDFLGASEGLNAKAQNRGLL 201

>NDPA_SALTI (P67715) Nucleoid-associated protein ndpA|
          Length = 334

 Score = 28.5 bits (62), Expect = 6.9
 Identities = 15/48 (31%), Positives = 24/48 (50%)
 Frame = +1

Query: 202 TEWKLNFRCSLTMTNDKGRASKKVAEGSSSALAVPDGRASSGPQKGRL 345
           TEW+ N + +  +T  KGR  +KVA+     L   +G  +    +G L
Sbjct: 154 TEWETNPQSTRYLTFLKGRVGRKVADFFMDFLGASEGLNAKAQNRGLL 201

>UTX_HUMAN (O15550) Ubiquitously transcribed X chromosome tetratricopeptide|
           repeat protein (Ubiquitously transcribed TPR protein on
           the X chromosome)
          Length = 1401

 Score = 28.1 bits (61), Expect = 9.0
 Identities = 15/39 (38%), Positives = 21/39 (53%)
 Frame = -1

Query: 412 HPLLGSNSPWSSALLDPLSSHWTTAPSEVHCWLFHQAQP 296
           HP L SNS    A L+ LSSH  T+  +    L  +++P
Sbjct: 682 HPTLPSNSVTQGAALNHLSSHTATSGGQQGITLTKESKP 720

>HSP7D_MANSE (Q9U639) Heat shock 70 kDa protein cognate 4 (Hsc 70-4)|
          Length = 652

 Score = 28.1 bits (61), Expect = 9.0
 Identities = 14/28 (50%), Positives = 17/28 (60%)
 Frame = +1

Query: 196 SATEWKLNFRCSLTMTNDKGRASKKVAE 279
           SA E   N    +T+TNDKGR SK+  E
Sbjct: 489 SAVEKSTNKENKITITNDKGRLSKEEIE 516

>RS5_PROMT (Q46IS5) 30S ribosomal protein S5|
          Length = 208

 Score = 28.1 bits (61), Expect = 9.0
 Identities = 14/40 (35%), Positives = 19/40 (47%)
 Frame = +1

Query: 238 MTNDKGRASKKVAEGSSSALAVPDGRASSGPQKGRLSNGR 357
           MT+   ++  K   GSSSA    DGR  +   +G    GR
Sbjct: 1   MTDSNNQSPNKKTSGSSSAPPAADGRQENRRSRGEKRGGR 40

>UTX_MOUSE (O70546) Ubiquitously transcribed X chromosome tetratricopeptide|
           repeat protein (Ubiquitously transcribed TPR protein on
           the X chromosome) (Fragment)
          Length = 1333

 Score = 28.1 bits (61), Expect = 9.0
 Identities = 15/39 (38%), Positives = 21/39 (53%)
 Frame = -1

Query: 412 HPLLGSNSPWSSALLDPLSSHWTTAPSEVHCWLFHQAQP 296
           HP L SNS    A L+ LSSH  T+  +    L  +++P
Sbjct: 614 HPTLPSNSVTQGAALNHLSSHTATSGGQQGITLTKESKP 652

>NDPA_SHIFL (Q83KD8) Nucleoid-associated protein ndpA|
          Length = 334

 Score = 28.1 bits (61), Expect = 9.0
 Identities = 15/48 (31%), Positives = 23/48 (47%)
 Frame = +1

Query: 202 TEWKLNFRCSLTMTNDKGRASKKVAEGSSSALAVPDGRASSGPQKGRL 345
           TEW+ N   +  +T  KGR  +KVA+     L   +G  +    +G L
Sbjct: 154 TEWETNPESTRYLTFLKGRVGRKVADFFMDFLGASEGLNAKAQNRGLL 201

>NDPA_ECOLI (P33920) Nucleoid-associated protein ndpA|
          Length = 334

 Score = 28.1 bits (61), Expect = 9.0
 Identities = 15/48 (31%), Positives = 23/48 (47%)
 Frame = +1

Query: 202 TEWKLNFRCSLTMTNDKGRASKKVAEGSSSALAVPDGRASSGPQKGRL 345
           TEW+ N   +  +T  KGR  +KVA+     L   +G  +    +G L
Sbjct: 154 TEWETNPESTRYLTFLKGRVGRKVADFFMDFLGASEGLNAKAQNRGLL 201

>NDPA_ECOL6 (Q8FFR9) Nucleoid-associated protein ndpA|
          Length = 334

 Score = 28.1 bits (61), Expect = 9.0
 Identities = 15/48 (31%), Positives = 23/48 (47%)
 Frame = +1

Query: 202 TEWKLNFRCSLTMTNDKGRASKKVAEGSSSALAVPDGRASSGPQKGRL 345
           TEW+ N   +  +T  KGR  +KVA+     L   +G  +    +G L
Sbjct: 154 TEWETNPESTRYLTFLKGRVGRKVADFFMDFLGASEGLNAKAQNRGLL 201

>NDPA_ECO57 (Q8XE68) Nucleoid-associated protein ndpA|
          Length = 334

 Score = 28.1 bits (61), Expect = 9.0
 Identities = 15/48 (31%), Positives = 23/48 (47%)
 Frame = +1

Query: 202 TEWKLNFRCSLTMTNDKGRASKKVAEGSSSALAVPDGRASSGPQKGRL 345
           TEW+ N   +  +T  KGR  +KVA+     L   +G  +    +G L
Sbjct: 154 TEWETNPESTRYLTFLKGRVGRKVADFFMDFLGASEGLNAKAQNRGLL 201

>GLMU_PSESM (Q87TT6) Bifunctional protein glmU [Includes:|
           UDP-N-acetylglucosamine pyrophosphorylase (EC 2.7.7.23)
           (N-acetylglucosamine-1-phosphate uridyltransferase);
           Glucosamine-1-phosphate N-acetyltransferase (EC
           2.3.1.157)]
          Length = 455

 Score = 28.1 bits (61), Expect = 9.0
 Identities = 16/47 (34%), Positives = 21/47 (44%)
 Frame = +1

Query: 226 CSLTMTNDKGRASKKVAEGSSSALAVPDGRASSGPQKGRLSNGRTTG 366
           C++    D   A K + EG++  LAVP          GRLSN    G
Sbjct: 147 CAIVEHKDATDAQKAITEGNTGILAVPASHLQD--WLGRLSNNNAQG 191


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.315    0.131    0.385 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 61,598,532
Number of Sequences: 219361
Number of extensions: 1301213
Number of successful extensions: 4272
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 4132
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4269
length of database: 80,573,946
effective HSP length: 101
effective length of database: 58,418,485
effective search space used: 2336739400
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)