ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | bastl08h05 |
|---|---|
| Clone Library Name | barley_pub |
>RLUE_HAEIN (P44827) Ribosomal large subunit pseudouridine synthase E (EC| 5.4.99.-) (rRNA-uridine isomerase E) (rRNA pseudouridylate synthase E) Length = 240 Score = 34.3 bits (77), Expect = 0.13 Identities = 16/37 (43%), Positives = 24/37 (64%) Frame = +3 Query: 150 VPPSRDLVQRLLKKNAELKSHLEKSAQSKVPSDPNIW 260 +P DL Q L+K ELK + KSA+ ++ S+PN+W Sbjct: 128 IPEETDLAQ--LRKGVELKDGVTKSAKVRLISEPNLW 162
>ATPG_PROMP (Q7V038) ATP synthase gamma chain (EC 3.6.3.14) (ATP synthase F1| sector gamma subunit) Length = 316 Score = 32.3 bits (72), Expect = 0.49 Identities = 16/43 (37%), Positives = 26/43 (60%), Gaps = 3/43 (6%) Frame = +3 Query: 129 VPMDSTAVPPSRDLVQRLLKKNAEL---KSHLEKSAQSKVPSD 248 +P+D + D + RL KN++L KS++EK+ K+PSD Sbjct: 193 LPLDPQGIAEDNDEIFRLTTKNSKLLVEKSNIEKNDSDKLPSD 235
>YP46_RTBVP (P27501) Hypothetical 46 kDa protein (P46) (ORF 4)| Length = 389 Score = 30.8 bits (68), Expect = 1.4 Identities = 20/84 (23%), Positives = 41/84 (48%), Gaps = 7/84 (8%) Frame = +3 Query: 162 RDLVQRLLKKNAELKSHLEKSAQSKVPSDPNIWLQMRENFEKMILADHD-------FCEK 320 +D V L K+N+EL++ ++ ++ I +RE +K I D FCE+ Sbjct: 84 KDQVSLLQKQNSELRA--------RIATNKEIIEGLREPVKKPIYTTQDKERLRVFFCEE 135 Query: 321 HEIEYILWQLHYKRIEEFRNHISS 392 +EYI + + + + +H+++ Sbjct: 136 RSMEYIYYHIKRLAQQSYYSHLNN 159
>ZN672_RAT (Q642B2) Zinc finger protein 672| Length = 468 Score = 30.8 bits (68), Expect = 1.4 Identities = 19/53 (35%), Positives = 24/53 (45%) Frame = -2 Query: 420 YHSEMQLNLQN*CGS*TPRFFCSATATKYTRSHAFHKSHDLPESFSQSSHASE 262 YH E+ CG RF C + + R+HA HK H PE S AS+ Sbjct: 342 YHCEL-------CGK---RFTCISNLNVHLRNHAGHKPHKCPECGKSFSVASK 384
>ZN672_MOUSE (Q99LH4) Zinc finger protein 672| Length = 468 Score = 30.8 bits (68), Expect = 1.4 Identities = 19/53 (35%), Positives = 24/53 (45%) Frame = -2 Query: 420 YHSEMQLNLQN*CGS*TPRFFCSATATKYTRSHAFHKSHDLPESFSQSSHASE 262 YH E+ CG RF C + + R+HA HK H PE S AS+ Sbjct: 342 YHCEL-------CGK---RFTCISNLNVHLRNHAGHKPHKCPECGKSFSVASK 384
>SRP72_HUMAN (O76094) Signal recognition particle 72 kDa protein (SRP72)| Length = 670 Score = 30.0 bits (66), Expect = 2.4 Identities = 15/32 (46%), Positives = 17/32 (53%) Frame = +3 Query: 180 LLKKNAELKSHLEKSAQSKVPSDPNIWLQMRE 275 L KK + K L K+ KV DP WL MRE Sbjct: 550 LKKKKKKKKGKLPKNYDPKVTPDPERWLPMRE 581
>SRP72_CANFA (P33731) Signal recognition particle 72 kDa protein (SRP72)| Length = 670 Score = 30.0 bits (66), Expect = 2.4 Identities = 15/32 (46%), Positives = 17/32 (53%) Frame = +3 Query: 180 LLKKNAELKSHLEKSAQSKVPSDPNIWLQMRE 275 L KK + K L K+ KV DP WL MRE Sbjct: 550 LKKKKKKKKGKLPKNYDPKVTPDPERWLPMRE 581
>ZN672_HUMAN (Q499Z4) Zinc finger protein 672| Length = 452 Score = 29.6 bits (65), Expect = 3.2 Identities = 16/41 (39%), Positives = 20/41 (48%) Frame = -2 Query: 384 CGS*TPRFFCSATATKYTRSHAFHKSHDLPESFSQSSHASE 262 CG RF C + + R+HA HK H PE S AS+ Sbjct: 344 CGK---RFTCVSNLNVHRRNHAGHKPHKCPECSKAFSVASK 381
>ILVC_HELPY (O25097) Ketol-acid reductoisomerase (EC 1.1.1.86)| (Acetohydroxy-acid isomeroreductase) (Alpha-keto-beta-hydroxylacil reductoisomerase) Length = 330 Score = 29.3 bits (64), Expect = 4.1 Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 5/47 (10%) Frame = +3 Query: 267 MRENFEKMILADHD-----FCEKHEIEYILWQLHYKRIEEFRNHISS 392 +R FE +I A + F HE++ + LHYK +E R HIS+ Sbjct: 209 VRMGFETLIKAGYPEELAYFECVHEVKLVADLLHYKGVEGLRKHISN 255
>ILVC_HELPJ (Q9ZMA9) Ketol-acid reductoisomerase (EC 1.1.1.86)| (Acetohydroxy-acid isomeroreductase) (Alpha-keto-beta-hydroxylacil reductoisomerase) Length = 330 Score = 29.3 bits (64), Expect = 4.1 Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 5/47 (10%) Frame = +3 Query: 267 MRENFEKMILADHD-----FCEKHEIEYILWQLHYKRIEEFRNHISS 392 +R FE +I A + F HE++ + LHYK +E R HIS+ Sbjct: 209 VRMGFETLIKAGYPEELAYFECVHEVKLVADLLHYKGVEGLRKHISN 255
>FOXGB_CHICK (Q90964) Forkhead box protein G1B (Forkhead-related protein FKHL1)| (Transcription factor BF-1) (Brain factor 1) (BF1) (CBF-1) (Proto-oncogene C-QIN) (N-62-5) (CEQ 3-1) Length = 451 Score = 28.5 bits (62), Expect = 7.1 Identities = 15/43 (34%), Positives = 21/43 (48%) Frame = -3 Query: 221 LLKMTFELGILLKEALHEVPRWRNSSTIHRNSHH*SIEHQYHH 93 L K +F + L+ EA+ +S H NSHH H +HH Sbjct: 13 LPKSSFSINSLVPEAVQSD---NHSGHSHHNSHHPHHHHHHHH 52
>TILS_LISIN (Q92F56) Bifunctional protein tilS/hprT [Includes:| tRNA(Ile)-lysidine synthase (EC 6.3.4.-) (tRNA(Ile)-lysidine synthetase) (tRNA(Ile)-2-lysyl-cytidine synthase); Hypoxanthine-guanine phosphoribosyltransferase (EC 2.4.2.8) (HGPRT) (HGPRTase)] Length = 648 Score = 28.5 bits (62), Expect = 7.1 Identities = 13/35 (37%), Positives = 21/35 (60%) Frame = +3 Query: 267 MRENFEKMILADHDFCEKHEIEYILWQLHYKRIEE 371 +REN EK LA FCE+ +I + + ++ K+ E Sbjct: 61 LRENAEKEQLAVQTFCEERDIPFFIEEVDVKKRAE 95
>GAG_SFV1 (Q00071) Gag polyprotein (Core polyprotein)| Length = 647 Score = 28.5 bits (62), Expect = 7.1 Identities = 17/50 (34%), Positives = 27/50 (54%) Frame = -2 Query: 360 FCSATATKYTRSHAFHKSHDLPESFSQSSHASEAICWDLMGLWTVLTSQD 211 + SA AT Y R+H + H L E + S++ A +G+ +LT+QD Sbjct: 361 WASAIATLYVRTHGSYPLHQLAEVLRRVSNSEGAAAAWQLGM--MLTNQD 408
>CKX7_ARATH (Q9FUJ1) Cytokinin dehydrogenase 7 (EC 1.5.99.12) (Cytokinin| oxidase 7) (CKO7) (AtCKX7) (AtCKX5) Length = 524 Score = 28.5 bits (62), Expect = 7.1 Identities = 15/43 (34%), Positives = 24/43 (55%), Gaps = 3/43 (6%) Frame = +3 Query: 282 EKMILADHD---FCEKHEIEYILWQLHYKRIEEFRNHISSAGS 401 EKM+ + + +C K+ I+Y L+ HYK EE+ H + S Sbjct: 456 EKMVAQNQEIVHWCVKNGIDYKLYLPHYKSQEEWIRHFGNRWS 498
>CBP1_CAEEL (P34545) Protein cbp-1| Length = 2056 Score = 28.1 bits (61), Expect = 9.2 Identities = 17/49 (34%), Positives = 21/49 (42%) Frame = +3 Query: 132 PMDSTAVPPSRDLVQRLLKKNAELKSHLEKSAQSKVPSDPNIWLQMREN 278 P DST P + RL E + S K P + WL+MREN Sbjct: 1848 PFDSTLQPQIMKINSRLKAAKTEEERETVFSDLKKTPHLFHAWLRMREN 1896
>EPL1_NEUCR (Q7S747) Enhancer of polycomb-like protein 1| Length = 589 Score = 28.1 bits (61), Expect = 9.2 Identities = 17/45 (37%), Positives = 24/45 (53%), Gaps = 3/45 (6%) Frame = +3 Query: 129 VPMDSTAVPPSRDLVQ---RLLKKNAELKSHLEKSAQSKVPSDPN 254 +P+ P DLVQ RL +KNAEL +EK Q+ + + N Sbjct: 329 MPVRPDGRPAESDLVQLSDRLAEKNAELIIEIEKKIQNHIDWNKN 373
>QIN_AVIS3 (P56260) Transforming protein Qin (Oncogene Qin)| Length = 387 Score = 28.1 bits (61), Expect = 9.2 Identities = 15/43 (34%), Positives = 21/43 (48%) Frame = -3 Query: 221 LLKMTFELGILLKEALHEVPRWRNSSTIHRNSHH*SIEHQYHH 93 L K +F + L+ EA+ +S H NSHH H +HH Sbjct: 13 LPKSSFSINNLVPEAVQSD---NHSGHSHHNSHHPHHHHHHHH 52 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 51,488,407 Number of Sequences: 219361 Number of extensions: 931351 Number of successful extensions: 2751 Number of sequences better than 10.0: 17 Number of HSP's better than 10.0 without gapping: 2634 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2724 length of database: 80,573,946 effective HSP length: 101 effective length of database: 58,418,485 effective search space used: 2395157885 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
