ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl08h03
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1IF2_CORGL (Q8NP40) Translation initiation factor IF-2 30 3.4
2PIN6_ORYSA (Q5JLM1) Probable auxin efflux carrier component 6 (O... 29 4.4
3GGA3_HUMAN (Q9NZ52) ADP-ribosylation factor-binding protein GGA3... 29 5.8
4MUA1_XENLA (P10667) Integumentary mucin A.1 precursor (FIM-A.1) ... 29 5.8
5GP1BA_HUMAN (P07359) Platelet glycoprotein Ib alpha chain precur... 29 5.8
6PAG2_PIG (Q29079) Pregnancy-associated glycoprotein 2 precursor ... 28 7.6
7SFR16_MOUSE (Q8CFC7) Splicing factor, arginine/serine-rich 16 (S... 28 7.6
8NQRE_CHLTR (O84283) Probable Na(+)-translocating NADH-quinone re... 28 7.6
9SFR16_HUMAN (Q8N2M8) Splicing factor, arginine/serine-rich 16 (S... 28 7.6
10CYTSA_CANFA (Q2KNA0) Cytospin-A 28 9.9

>IF2_CORGL (Q8NP40) Translation initiation factor IF-2|
          Length = 1004

 Score = 29.6 bits (65), Expect = 3.4
 Identities = 14/40 (35%), Positives = 19/40 (47%)
 Frame = +1

Query: 7   AFPSSSRDETTNSPALVASPAAFSPLPTTPDASAEPRTRP 126
           A PS+++  +   PA  A PA   P P      AEP  +P
Sbjct: 137 AAPSAAKSGSAPKPAAAAKPAFSGPTPGDAAKKAEPAAKP 176



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>PIN6_ORYSA (Q5JLM1) Probable auxin efflux carrier component 6 (OsPIN6)|
          Length = 363

 Score = 29.3 bits (64), Expect = 4.4
 Identities = 14/36 (38%), Positives = 22/36 (61%)
 Frame = -2

Query: 134 ATLGLVRGSAEASGVVGRGEKAAGDATRAGELVVSS 27
           A +G+    AEA+   G+  +AAG A  AG +VV++
Sbjct: 159 AAIGMYVDGAEAAAAAGKDVEAAGAAAAAGTVVVAA 194



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>GGA3_HUMAN (Q9NZ52) ADP-ribosylation factor-binding protein GGA3|
           (Golgi-localized, gamma ear-containing, ARF-binding
           protein 3)
          Length = 723

 Score = 28.9 bits (63), Expect = 5.8
 Identities = 17/39 (43%), Positives = 21/39 (53%), Gaps = 6/39 (15%)
 Frame = +1

Query: 31  ETTNSPALVASPAAFSP------LPTTPDASAEPRTRPS 129
           +TTNS + V +PA   P      LP  P AS  PR+R S
Sbjct: 333 DTTNSLSSVLAPAPTPPSSGIPILPPPPQASGPPRSRSS 371



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>MUA1_XENLA (P10667) Integumentary mucin A.1 precursor (FIM-A.1)|
           (Preprospasmolysin)
          Length = 400

 Score = 28.9 bits (63), Expect = 5.8
 Identities = 12/39 (30%), Positives = 21/39 (53%)
 Frame = +1

Query: 13  PSSSRDETTNSPALVASPAAFSPLPTTPDASAEPRTRPS 129
           P ++   TT      ++ A  + +PTTP+ + EP T P+
Sbjct: 221 PETTTVPTTPETTTASTTAETTTVPTTPETTTEPTTTPT 259



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>GP1BA_HUMAN (P07359) Platelet glycoprotein Ib alpha chain precursor|
           (Glycoprotein Ibalpha) (GP-Ib alpha) (GPIbA)
           (GPIb-alpha) (Antigen CD42b-alpha) (CD42b antigen)
           [Contains: Glycocalicin]
          Length = 626

 Score = 28.9 bits (63), Expect = 5.8
 Identities = 14/43 (32%), Positives = 22/43 (51%)
 Frame = +1

Query: 1   TKAFPSSSRDETTNSPALVASPAAFSPLPTTPDASAEPRTRPS 129
           T+  PS +  E    PA   +    +P PTTP+ ++EP   P+
Sbjct: 380 TEPTPSPTTSEPVPEPAPNMTTLEPTPSPTTPEPTSEPAPSPT 422



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>PAG2_PIG (Q29079) Pregnancy-associated glycoprotein 2 precursor (EC|
           3.4.23.-) (PAG 2)
          Length = 420

 Score = 28.5 bits (62), Expect = 7.6
 Identities = 15/42 (35%), Positives = 22/42 (52%)
 Frame = -2

Query: 131 TLGLVRGSAEASGVVGRGEKAAGDATRAGELVVSSREEEGKA 6
           ++ L  GS + SG +G+     G  T  G+    S+EE GKA
Sbjct: 132 SIKLEYGSGKMSGFLGQDTVRIGQLTSTGQAFGLSKEETGKA 173



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>SFR16_MOUSE (Q8CFC7) Splicing factor, arginine/serine-rich 16 (Suppressor of|
           white-apricot homolog 2) (Clk4-associating SR-related
           protein)
          Length = 653

 Score = 28.5 bits (62), Expect = 7.6
 Identities = 18/51 (35%), Positives = 27/51 (52%), Gaps = 5/51 (9%)
 Frame = +3

Query: 27  RRDDQFARPRRVAGRLLPPPHHARRLRGTANETQRSESR-----LGRARAP 164
           RR  +  R +R+ GR + PP +ARR   T +  +RS S        R+R+P
Sbjct: 253 RRQRREFREKRLRGRKISPPSYARRDSPTYDPYKRSPSESSSESRSRSRSP 303



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>NQRE_CHLTR (O84283) Probable Na(+)-translocating NADH-quinone reductase|
           subunit E (EC 1.6.5.-) (Na(+)-translocating NQR subunit
           E) (Na(+)-NQR subunit E) (NQR complex subunit E) (NQR-1
           subunit E)
          Length = 244

 Score = 28.5 bits (62), Expect = 7.6
 Identities = 13/28 (46%), Positives = 17/28 (60%)
 Frame = +1

Query: 34  TTNSPALVASPAAFSPLPTTPDASAEPR 117
           TT+ PA V + A  SP P T  +S EP+
Sbjct: 215 TTSKPAFVTNIATDSPQPNTHSSSEEPK 242



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>SFR16_HUMAN (Q8N2M8) Splicing factor, arginine/serine-rich 16 (Suppressor of|
           white-apricot homolog 2)
          Length = 659

 Score = 28.5 bits (62), Expect = 7.6
 Identities = 18/51 (35%), Positives = 27/51 (52%), Gaps = 5/51 (9%)
 Frame = +3

Query: 27  RRDDQFARPRRVAGRLLPPPHHARRLRGTANETQRSESR-----LGRARAP 164
           RR  +  R +R+ GR + PP +ARR   T +  +RS S        R+R+P
Sbjct: 253 RRQRREFREKRLRGRKISPPSYARRDSPTYDPYKRSPSESSSESRSRSRSP 303



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>CYTSA_CANFA (Q2KNA0) Cytospin-A|
          Length = 1117

 Score = 28.1 bits (61), Expect = 9.9
 Identities = 14/42 (33%), Positives = 23/42 (54%)
 Frame = +1

Query: 4   KAFPSSSRDETTNSPALVASPAAFSPLPTTPDASAEPRTRPS 129
           K+F S+S+     + A+  +P + SP+ T P A+  P  R S
Sbjct: 846 KSFDSASQVPNPTAAAIPRTPLSPSPMKTPPAAAVSPMQRHS 887


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.309    0.124    0.375 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 36,816,401
Number of Sequences: 219361
Number of extensions: 504733
Number of successful extensions: 2198
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2059
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2196
length of database: 80,573,946
effective HSP length: 101
effective length of database: 58,418,485
effective search space used: 2570413340
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
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