Clone Name | bastl08h03 |
---|---|
Clone Library Name | barley_pub |
>IF2_CORGL (Q8NP40) Translation initiation factor IF-2| Length = 1004 Score = 29.6 bits (65), Expect = 3.4 Identities = 14/40 (35%), Positives = 19/40 (47%) Frame = +1 Query: 7 AFPSSSRDETTNSPALVASPAAFSPLPTTPDASAEPRTRP 126 A PS+++ + PA A PA P P AEP +P Sbjct: 137 AAPSAAKSGSAPKPAAAAKPAFSGPTPGDAAKKAEPAAKP 176
>PIN6_ORYSA (Q5JLM1) Probable auxin efflux carrier component 6 (OsPIN6)| Length = 363 Score = 29.3 bits (64), Expect = 4.4 Identities = 14/36 (38%), Positives = 22/36 (61%) Frame = -2 Query: 134 ATLGLVRGSAEASGVVGRGEKAAGDATRAGELVVSS 27 A +G+ AEA+ G+ +AAG A AG +VV++ Sbjct: 159 AAIGMYVDGAEAAAAAGKDVEAAGAAAAAGTVVVAA 194
>GGA3_HUMAN (Q9NZ52) ADP-ribosylation factor-binding protein GGA3| (Golgi-localized, gamma ear-containing, ARF-binding protein 3) Length = 723 Score = 28.9 bits (63), Expect = 5.8 Identities = 17/39 (43%), Positives = 21/39 (53%), Gaps = 6/39 (15%) Frame = +1 Query: 31 ETTNSPALVASPAAFSP------LPTTPDASAEPRTRPS 129 +TTNS + V +PA P LP P AS PR+R S Sbjct: 333 DTTNSLSSVLAPAPTPPSSGIPILPPPPQASGPPRSRSS 371
>MUA1_XENLA (P10667) Integumentary mucin A.1 precursor (FIM-A.1)| (Preprospasmolysin) Length = 400 Score = 28.9 bits (63), Expect = 5.8 Identities = 12/39 (30%), Positives = 21/39 (53%) Frame = +1 Query: 13 PSSSRDETTNSPALVASPAAFSPLPTTPDASAEPRTRPS 129 P ++ TT ++ A + +PTTP+ + EP T P+ Sbjct: 221 PETTTVPTTPETTTASTTAETTTVPTTPETTTEPTTTPT 259
>GP1BA_HUMAN (P07359) Platelet glycoprotein Ib alpha chain precursor| (Glycoprotein Ibalpha) (GP-Ib alpha) (GPIbA) (GPIb-alpha) (Antigen CD42b-alpha) (CD42b antigen) [Contains: Glycocalicin] Length = 626 Score = 28.9 bits (63), Expect = 5.8 Identities = 14/43 (32%), Positives = 22/43 (51%) Frame = +1 Query: 1 TKAFPSSSRDETTNSPALVASPAAFSPLPTTPDASAEPRTRPS 129 T+ PS + E PA + +P PTTP+ ++EP P+ Sbjct: 380 TEPTPSPTTSEPVPEPAPNMTTLEPTPSPTTPEPTSEPAPSPT 422
>PAG2_PIG (Q29079) Pregnancy-associated glycoprotein 2 precursor (EC| 3.4.23.-) (PAG 2) Length = 420 Score = 28.5 bits (62), Expect = 7.6 Identities = 15/42 (35%), Positives = 22/42 (52%) Frame = -2 Query: 131 TLGLVRGSAEASGVVGRGEKAAGDATRAGELVVSSREEEGKA 6 ++ L GS + SG +G+ G T G+ S+EE GKA Sbjct: 132 SIKLEYGSGKMSGFLGQDTVRIGQLTSTGQAFGLSKEETGKA 173
>SFR16_MOUSE (Q8CFC7) Splicing factor, arginine/serine-rich 16 (Suppressor of| white-apricot homolog 2) (Clk4-associating SR-related protein) Length = 653 Score = 28.5 bits (62), Expect = 7.6 Identities = 18/51 (35%), Positives = 27/51 (52%), Gaps = 5/51 (9%) Frame = +3 Query: 27 RRDDQFARPRRVAGRLLPPPHHARRLRGTANETQRSESR-----LGRARAP 164 RR + R +R+ GR + PP +ARR T + +RS S R+R+P Sbjct: 253 RRQRREFREKRLRGRKISPPSYARRDSPTYDPYKRSPSESSSESRSRSRSP 303
>NQRE_CHLTR (O84283) Probable Na(+)-translocating NADH-quinone reductase| subunit E (EC 1.6.5.-) (Na(+)-translocating NQR subunit E) (Na(+)-NQR subunit E) (NQR complex subunit E) (NQR-1 subunit E) Length = 244 Score = 28.5 bits (62), Expect = 7.6 Identities = 13/28 (46%), Positives = 17/28 (60%) Frame = +1 Query: 34 TTNSPALVASPAAFSPLPTTPDASAEPR 117 TT+ PA V + A SP P T +S EP+ Sbjct: 215 TTSKPAFVTNIATDSPQPNTHSSSEEPK 242
>SFR16_HUMAN (Q8N2M8) Splicing factor, arginine/serine-rich 16 (Suppressor of| white-apricot homolog 2) Length = 659 Score = 28.5 bits (62), Expect = 7.6 Identities = 18/51 (35%), Positives = 27/51 (52%), Gaps = 5/51 (9%) Frame = +3 Query: 27 RRDDQFARPRRVAGRLLPPPHHARRLRGTANETQRSESR-----LGRARAP 164 RR + R +R+ GR + PP +ARR T + +RS S R+R+P Sbjct: 253 RRQRREFREKRLRGRKISPPSYARRDSPTYDPYKRSPSESSSESRSRSRSP 303
>CYTSA_CANFA (Q2KNA0) Cytospin-A| Length = 1117 Score = 28.1 bits (61), Expect = 9.9 Identities = 14/42 (33%), Positives = 23/42 (54%) Frame = +1 Query: 4 KAFPSSSRDETTNSPALVASPAAFSPLPTTPDASAEPRTRPS 129 K+F S+S+ + A+ +P + SP+ T P A+ P R S Sbjct: 846 KSFDSASQVPNPTAAAIPRTPLSPSPMKTPPAAAVSPMQRHS 887 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.309 0.124 0.375 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 36,816,401 Number of Sequences: 219361 Number of extensions: 504733 Number of successful extensions: 2198 Number of sequences better than 10.0: 10 Number of HSP's better than 10.0 without gapping: 2059 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2196 length of database: 80,573,946 effective HSP length: 101 effective length of database: 58,418,485 effective search space used: 2570413340 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.7 bits)