ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl08h02 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 198 bits (100), Expect = 1e-47 Identities = 193/224 (86%) Strand = Plus / Plus Query: 43 ccgcagcccccggcggcgaccctgcgcggattcctggacgcgcacttcgcctccgccgag 102 |||| ||| ||| |||||| |||||| | |||||||||||||||||||||||| ||||| Sbjct: 29120483 ccgcggccgccgccggcgagcctgcggagcttcctggacgcgcacttcgcctcccccgag 29120542 Query: 103 gacctggccgccgcgccggccctcgccgagctcctccgccgcgaatgcgcggggctcgag 162 ||||| ||| |||| ||||| ||||| |||||||| |||||||| |||| ||| || || Sbjct: 29120543 gacctcgcctccgcaccggcgctcgctgagctcctgcgccgcgagtgcgtgggcctggat 29120602 Query: 163 gcgtccctccgccgcctcgaggcgcagctcgcgtccggctccgcctcctggctcgcccgc 222 || |||||||||||||||||||||||||||||||||| ||||||||||||||||| ||| Sbjct: 29120603 gcatccctccgccgcctcgaggcgcagctcgcgtccgtatccgcctcctggctcgcgcgc 29120662 Query: 223 tccgccgaggcccggtcaggcctccgccgcatccgctcccgagg 266 ||||||| || || || ||||||||||||||||||||||| Sbjct: 29120663 tccgccggcgctcgcgcatctctccgccgcatccgctcccgagg 29120706 Score = 71.9 bits (36), Expect = 2e-09 Identities = 45/48 (93%) Strand = Plus / Plus Query: 373 gaagctactctacagttggaagctctggttggtaacctagaagatgca 420 |||||| ||||||||||||||||| | ||||||||||||||||||||| Sbjct: 29121853 gaagctgctctacagttggaagcttttgttggtaacctagaagatgca 29121900 Score = 61.9 bits (31), Expect = 2e-06 Identities = 52/59 (88%) Strand = Plus / Plus Query: 315 ggagctgccggcgatcgtgcgggagatccagcggatcgacaccattcggctctacgcgg 373 ||||||||||||| | |||| ||||||||| ||||||||| ||||||| ||||| |||| Sbjct: 29120891 ggagctgccggcgcttgtgcaggagatccatcggatcgacgccattcgactctatgcgg 29120949
>dbj|AP003813.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1150_E04 Length = 130973 Score = 198 bits (100), Expect = 1e-47 Identities = 193/224 (86%) Strand = Plus / Plus Query: 43 ccgcagcccccggcggcgaccctgcgcggattcctggacgcgcacttcgcctccgccgag 102 |||| ||| ||| |||||| |||||| | |||||||||||||||||||||||| ||||| Sbjct: 55601 ccgcggccgccgccggcgagcctgcggagcttcctggacgcgcacttcgcctcccccgag 55660 Query: 103 gacctggccgccgcgccggccctcgccgagctcctccgccgcgaatgcgcggggctcgag 162 ||||| ||| |||| ||||| ||||| |||||||| |||||||| |||| ||| || || Sbjct: 55661 gacctcgcctccgcaccggcgctcgctgagctcctgcgccgcgagtgcgtgggcctggat 55720 Query: 163 gcgtccctccgccgcctcgaggcgcagctcgcgtccggctccgcctcctggctcgcccgc 222 || |||||||||||||||||||||||||||||||||| ||||||||||||||||| ||| Sbjct: 55721 gcatccctccgccgcctcgaggcgcagctcgcgtccgtatccgcctcctggctcgcgcgc 55780 Query: 223 tccgccgaggcccggtcaggcctccgccgcatccgctcccgagg 266 ||||||| || || || ||||||||||||||||||||||| Sbjct: 55781 tccgccggcgctcgcgcatctctccgccgcatccgctcccgagg 55824 Score = 71.9 bits (36), Expect = 2e-09 Identities = 45/48 (93%) Strand = Plus / Plus Query: 373 gaagctactctacagttggaagctctggttggtaacctagaagatgca 420 |||||| ||||||||||||||||| | ||||||||||||||||||||| Sbjct: 56971 gaagctgctctacagttggaagcttttgttggtaacctagaagatgca 57018 Score = 61.9 bits (31), Expect = 2e-06 Identities = 52/59 (88%) Strand = Plus / Plus Query: 315 ggagctgccggcgatcgtgcgggagatccagcggatcgacaccattcggctctacgcgg 373 ||||||||||||| | |||| ||||||||| ||||||||| ||||||| ||||| |||| Sbjct: 56009 ggagctgccggcgcttgtgcaggagatccatcggatcgacgccattcgactctatgcgg 56067
>dbj|AP003818.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1200_C08 Length = 106214 Score = 198 bits (100), Expect = 1e-47 Identities = 193/224 (86%) Strand = Plus / Plus Query: 43 ccgcagcccccggcggcgaccctgcgcggattcctggacgcgcacttcgcctccgccgag 102 |||| ||| ||| |||||| |||||| | |||||||||||||||||||||||| ||||| Sbjct: 68440 ccgcggccgccgccggcgagcctgcggagcttcctggacgcgcacttcgcctcccccgag 68499 Query: 103 gacctggccgccgcgccggccctcgccgagctcctccgccgcgaatgcgcggggctcgag 162 ||||| ||| |||| ||||| ||||| |||||||| |||||||| |||| ||| || || Sbjct: 68500 gacctcgcctccgcaccggcgctcgctgagctcctgcgccgcgagtgcgtgggcctggat 68559 Query: 163 gcgtccctccgccgcctcgaggcgcagctcgcgtccggctccgcctcctggctcgcccgc 222 || |||||||||||||||||||||||||||||||||| ||||||||||||||||| ||| Sbjct: 68560 gcatccctccgccgcctcgaggcgcagctcgcgtccgtatccgcctcctggctcgcgcgc 68619 Query: 223 tccgccgaggcccggtcaggcctccgccgcatccgctcccgagg 266 ||||||| || || || ||||||||||||||||||||||| Sbjct: 68620 tccgccggcgctcgcgcatctctccgccgcatccgctcccgagg 68663 Score = 71.9 bits (36), Expect = 2e-09 Identities = 45/48 (93%) Strand = Plus / Plus Query: 373 gaagctactctacagttggaagctctggttggtaacctagaagatgca 420 |||||| ||||||||||||||||| | ||||||||||||||||||||| Sbjct: 69810 gaagctgctctacagttggaagcttttgttggtaacctagaagatgca 69857 Score = 61.9 bits (31), Expect = 2e-06 Identities = 52/59 (88%) Strand = Plus / Plus Query: 315 ggagctgccggcgatcgtgcgggagatccagcggatcgacaccattcggctctacgcgg 373 ||||||||||||| | |||| ||||||||| ||||||||| ||||||| ||||| |||| Sbjct: 68848 ggagctgccggcgcttgtgcaggagatccatcggatcgacgccattcgactctatgcgg 68906
>dbj|AK067620.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013109M11, full insert sequence Length = 3200 Score = 196 bits (99), Expect = 4e-47 Identities = 192/223 (86%) Strand = Plus / Plus Query: 43 ccgcagcccccggcggcgaccctgcgcggattcctggacgcgcacttcgcctccgccgag 102 |||| ||| ||| |||||| |||||| | |||||||||||||||||||||||| ||||| Sbjct: 71 ccgcggccgccgccggcgagcctgcggagcttcctggacgcgcacttcgcctcccccgag 130 Query: 103 gacctggccgccgcgccggccctcgccgagctcctccgccgcgaatgcgcggggctcgag 162 ||||| ||| |||| ||||| ||||| |||||||| |||||||| |||| ||| || || Sbjct: 131 gacctcgcctccgcaccggcgctcgctgagctcctgcgccgcgagtgcgtgggcctggat 190 Query: 163 gcgtccctccgccgcctcgaggcgcagctcgcgtccggctccgcctcctggctcgcccgc 222 || |||||||||||||||||||||||||||||||||| ||||||||||||||||| ||| Sbjct: 191 gcatccctccgccgcctcgaggcgcagctcgcgtccgtatccgcctcctggctcgcgcgc 250 Query: 223 tccgccgaggcccggtcaggcctccgccgcatccgctcccgag 265 ||||||| || || || |||||||||||||||||||||| Sbjct: 251 tccgccggagctcgcgcatctctccgccgcatccgctcccgag 293 Score = 131 bits (66), Expect = 2e-27 Identities = 96/106 (90%) Strand = Plus / Plus Query: 315 ggagctgccggcgatcgtgcgggagatccagcggatcgacaccattcggctctacgcgga 374 ||||||||||||| | |||| ||||||||| ||||||||| ||||||| ||||| ||||| Sbjct: 399 ggagctgccggcgcttgtgcaggagatccatcggatcgacgccattcgactctatgcgga 458 Query: 375 agctactctacagttggaagctctggttggtaacctagaagatgca 420 |||| ||||||||||||||||| | ||||||||||||||||||||| Sbjct: 459 agctgctctacagttggaagcttttgttggtaacctagaagatgca 504
>gb|CP000148.1| Geobacter metallireducens GS-15, complete genome Length = 3997420 Score = 44.1 bits (22), Expect = 0.38 Identities = 22/22 (100%) Strand = Plus / Plus Query: 107 tggccgccgcgccggccctcgc 128 |||||||||||||||||||||| Sbjct: 1641497 tggccgccgcgccggccctcgc 1641518
>gb|AY162971.1| Micromonospora chersina dynemicin enediyne iterative type I polyketide synthase gene locus, partial sequence Length = 6653 Score = 44.1 bits (22), Expect = 0.38 Identities = 22/22 (100%) Strand = Plus / Plus Query: 102 ggacctggccgccgcgccggcc 123 |||||||||||||||||||||| Sbjct: 5950 ggacctggccgccgcgccggcc 5971
>gb|CP000271.1| Burkholderia xenovorans LB400 chromosome 2, complete sequence Length = 3363523 Score = 44.1 bits (22), Expect = 0.38 Identities = 34/38 (89%) Strand = Plus / Minus Query: 116 cgccggccctcgccgagctcctccgccgcgaatgcgcg 153 |||||||| ||||||| |||||||||||| || ||||| Sbjct: 1187955 cgccggccgtcgccgaactcctccgccgcaaacgcgcg 1187918
>emb|BX640443.1| Bordetella bronchiseptica strain RB50, complete genome; segment 7/16 Length = 346274 Score = 44.1 bits (22), Expect = 0.38 Identities = 28/30 (93%) Strand = Plus / Plus Query: 105 cctggccgccgcgccggccctcgccgagct 134 ||||||||||||||||||||| ||| |||| Sbjct: 184461 cctggccgccgcgccggccctggccaagct 184490
>emb|BX640442.1| Bordetella bronchiseptica strain RB50, complete genome; segment 6/16 Length = 349876 Score = 44.1 bits (22), Expect = 0.38 Identities = 22/22 (100%) Strand = Plus / Plus Query: 93 ctccgccgaggacctggccgcc 114 |||||||||||||||||||||| Sbjct: 100343 ctccgccgaggacctggccgcc 100364
>emb|BX640430.1| Bordetella parapertussis strain 12822, complete genome; segment 8/14 Length = 348014 Score = 44.1 bits (22), Expect = 0.38 Identities = 22/22 (100%) Strand = Plus / Plus Query: 93 ctccgccgaggacctggccgcc 114 |||||||||||||||||||||| Sbjct: 11244 ctccgccgaggacctggccgcc 11265
>emb|BX640428.1| Bordetella parapertussis strain 12822, complete genome; segment 6/14 Length = 348525 Score = 44.1 bits (22), Expect = 0.38 Identities = 28/30 (93%) Strand = Plus / Plus Query: 105 cctggccgccgcgccggccctcgccgagct 134 ||||||||||||||||||||| ||| |||| Sbjct: 331841 cctggccgccgcgccggccctggccaagct 331870
>emb|BX640416.1| Bordetella pertussis strain Tohama I, complete genome; segment 6/12 Length = 349354 Score = 44.1 bits (22), Expect = 0.38 Identities = 22/22 (100%) Strand = Plus / Plus Query: 93 ctccgccgaggacctggccgcc 114 |||||||||||||||||||||| Sbjct: 296163 ctccgccgaggacctggccgcc 296184
>emb|BX640415.1| Bordetella pertussis strain Tohama I, complete genome; segment 5/12 Length = 347071 Score = 44.1 bits (22), Expect = 0.38 Identities = 28/30 (93%) Strand = Plus / Plus Query: 105 cctggccgccgcgccggccctcgccgagct 134 ||||||||||||||||||||| ||| |||| Sbjct: 166947 cctggccgccgcgccggccctggccaagct 166976
>emb|AL939119.1|SCO939119 Streptomyces coelicolor A3(2) complete genome; segment 16/29 Length = 299050 Score = 44.1 bits (22), Expect = 0.38 Identities = 22/22 (100%) Strand = Plus / Plus Query: 95 ccgccgaggacctggccgccgc 116 |||||||||||||||||||||| Sbjct: 260027 ccgccgaggacctggccgccgc 260048
>gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome Length = 5331656 Score = 44.1 bits (22), Expect = 0.38 Identities = 28/30 (93%) Strand = Plus / Minus Query: 170 tccgccgcctcgaggcgcagctcgcgtccg 199 ||||||||| ||||||||||||||||||| Sbjct: 3309585 tccgccgccaggaggcgcagctcgcgtccg 3309556
>gb|AF546156.1| Micromonospora chersinia UnbL (unbL), UnbV (unbV), UnbU (unbU), PksE (pksE), and TebC (tebC) genes, complete cds Length = 10136 Score = 44.1 bits (22), Expect = 0.38 Identities = 22/22 (100%) Strand = Plus / Plus Query: 102 ggacctggccgccgcgccggcc 123 |||||||||||||||||||||| Sbjct: 9181 ggacctggccgccgcgccggcc 9202
>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome Length = 5013479 Score = 44.1 bits (22), Expect = 0.38 Identities = 22/22 (100%) Strand = Plus / Minus Query: 109 gccgccgcgccggccctcgccg 130 |||||||||||||||||||||| Sbjct: 4721575 gccgccgcgccggccctcgccg 4721554 Score = 42.1 bits (21), Expect = 1.5 Identities = 27/29 (93%) Strand = Plus / Plus Query: 132 gctcctccgccgcgaatgcgcggggctcg 160 ||||||||||| |||| |||||||||||| Sbjct: 3433462 gctcctccgcctcgaaggcgcggggctcg 3433490
>gb|AC008039.1|AC008039 Homo sapiens clone SCb-391H5 from 7q31, complete sequence Length = 197346 Score = 44.1 bits (22), Expect = 0.38 Identities = 22/22 (100%) Strand = Plus / Plus Query: 39 gcggccgcagcccccggcggcg 60 |||||||||||||||||||||| Sbjct: 70024 gcggccgcagcccccggcggcg 70045
>ref|XM_473900.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 759 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 125 tcgccgagctcctccgccgcg 145 ||||||||||||||||||||| Sbjct: 596 tcgccgagctcctccgccgcg 616
>gb|AC138195.2| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0005P21, complete sequence Length = 147381 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 124 ctcgccgagctcctccgccgc 144 ||||||||||||||||||||| Sbjct: 76835 ctcgccgagctcctccgccgc 76855
>gb|AC135914.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBa0074P11, complete sequence Length = 148753 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Plus Query: 109 gccgccgcgccggccctcgccgagc 133 ||||||||||||||| ||||||||| Sbjct: 97939 gccgccgcgccggccgtcgccgagc 97963
>gb|CP000125.1| Burkholderia pseudomallei 1710b chromosome II, complete sequence Length = 3181762 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Plus Query: 318 gctgccggcgatcgtgcgggagatc 342 |||||||||||||||||||| |||| Sbjct: 2505710 gctgccggcgatcgtgcgggcgatc 2505734
>gb|AC175711.3| Pan troglodytes BAC clone CH251-100H6 from chromosome unknown, complete sequence Length = 169508 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Minus Query: 35 ccccgcggccgcagcccccggcggc 59 |||||||||||||||||||| |||| Sbjct: 15076 ccccgcggccgcagcccccgccggc 15052
>emb|AL139384.17| Human DNA sequence from clone RP11-88E10 on chromosome 13q33.1-34 Contains the 5' end of the ATP11A gene for Class VI ATPase type IIA, a novel gene, the 5' end of the TUBGCP3 gene for tubulin gamma complex associated protein 3 and two CpG islands, complete sequence Length = 187157 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Plus Query: 35 ccccgcggccgcagcccccggcggc 59 |||||||||||||||||||| |||| Sbjct: 3035 ccccgcggccgcagcccccgccggc 3059
>emb|BX571966.1| Burkholderia pseudomallei strain K96243, chromosome 2, complete sequence Length = 3173005 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Plus Query: 318 gctgccggcgatcgtgcgggagatc 342 |||||||||||||||||||| |||| Sbjct: 685734 gctgccggcgatcgtgcgggcgatc 685758
>gb|DQ157761.1| Sus scrofa chemokine C-C motif receptor 10 (CCR10) mRNA, complete cds Length = 1092 Score = 42.1 bits (21), Expect = 1.5 Identities = 27/29 (93%) Strand = Plus / Plus Query: 31 tcacccccgcggccgcagcccccggcggc 59 |||||||||||||||| ||||||| |||| Sbjct: 1002 tcacccccgcggccgctgcccccgccggc 1030
>emb|AL606648.3|OSJN00093 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0093O08, complete sequence Length = 148860 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 125 tcgccgagctcctccgccgcg 145 ||||||||||||||||||||| Sbjct: 80857 tcgccgagctcctccgccgcg 80837
>gb|AY131229.2| Streptomyces sp. 139 exopolysaccharide gene cluster, complete sequence Length = 31310 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 108 ggccgccgcgccggccctcgc 128 ||||||||||||||||||||| Sbjct: 12100 ggccgccgcgccggccctcgc 12120
>gb|AC161617.4| Pan troglodytes BAC clone CH251-548L6 from chromosome unknown, complete sequence Length = 218767 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Plus Query: 35 ccccgcggccgcagcccccggcggc 59 |||||||||||||||||||| |||| Sbjct: 181633 ccccgcggccgcagcccccgccggc 181657
>gb|CP000011.2| Burkholderia mallei ATCC 23344 chromosome 2, complete sequence Length = 2325379 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Minus Query: 318 gctgccggcgatcgtgcgggagatc 342 |||||||||||||||||||| |||| Sbjct: 1940175 gctgccggcgatcgtgcgggcgatc 1940151
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 125 tcgccgagctcctccgccgcg 145 ||||||||||||||||||||| Sbjct: 31384049 tcgccgagctcctccgccgcg 31384029
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 42.1 bits (21), Expect = 1.5 Identities = 27/29 (93%) Strand = Plus / Plus Query: 117 gccggccctcgccgagctcctccgccgcg 145 |||||| || ||||||||||||||||||| Sbjct: 26802084 gccggcgctggccgagctcctccgccgcg 26802112
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 124 ctcgccgagctcctccgccgc 144 ||||||||||||||||||||| Sbjct: 11536953 ctcgccgagctcctccgccgc 11536933 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 122 ccctcgccgagctcctccgc 141 |||||||||||||||||||| Sbjct: 19558168 ccctcgccgagctcctccgc 19558187
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Plus Query: 109 gccgccgcgccggccctcgccgagc 133 ||||||||||||||| ||||||||| Sbjct: 6866985 gccgccgcgccggccgtcgccgagc 6867009
>dbj|AB018710.2| Gallus gallus SF-1/Ad4BP gene for SF-1/Ad4BP, complete cds Length = 21875 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 40 cggccgcagcccccggcggcg 60 ||||||||||||||||||||| Sbjct: 5371 cggccgcagcccccggcggcg 5391
>gb|AF172851.1|AF172851 Chromobacterium violaceum violacein biosynthetic gene cluster, complete sequence Length = 10094 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Minus Query: 106 ctggccgccgcgccggccctcgccg 130 |||||||||||||||||| |||||| Sbjct: 9561 ctggccgccgcgccggccatcgccg 9537
>gb|AE004550.1| Pseudomonas aeruginosa PAO1, section 111 of 529 of the complete genome Length = 10840 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 95 ccgccgaggacctggccgccg 115 ||||||||||||||||||||| Sbjct: 4480 ccgccgaggacctggccgccg 4460
>dbj|AK107886.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-134-D12, full insert sequence Length = 674 Score = 42.1 bits (21), Expect = 1.5 Identities = 27/29 (93%) Strand = Plus / Plus Query: 117 gccggccctcgccgagctcctccgccgcg 145 |||||| || ||||||||||||||||||| Sbjct: 310 gccggcgctggccgagctcctccgccgcg 338
>emb|AL442111.3| Oryza sativa genomic DNA, chromosome 4, BAC clone: H0818E11, complete sequence Length = 88090 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 125 tcgccgagctcctccgccgcg 145 ||||||||||||||||||||| Sbjct: 50180 tcgccgagctcctccgccgcg 50160
>emb|AL117264.3| Oryza sativa genomic DNA, chromosome 4, BAC clone: H0313F03, complete sequence Length = 131195 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 125 tcgccgagctcctccgccgcg 145 ||||||||||||||||||||| Sbjct: 3923 tcgccgagctcctccgccgcg 3903
>gb|AE016825.1| Chromobacterium violaceum ATCC 12472, complete genome Length = 4751080 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 95 ccgccgaggacctggccgccg 115 ||||||||||||||||||||| Sbjct: 3650075 ccgccgaggacctggccgccg 3650095
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 124 ctcgccgagctcctccgccgc 144 ||||||||||||||||||||| Sbjct: 11616142 ctcgccgagctcctccgccgc 11616122 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 122 ccctcgccgagctcctccgc 141 |||||||||||||||||||| Sbjct: 19719883 ccctcgccgagctcctccgc 19719902
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 42.1 bits (21), Expect = 1.5 Identities = 27/29 (93%) Strand = Plus / Plus Query: 117 gccggccctcgccgagctcctccgccgcg 145 |||||| || ||||||||||||||||||| Sbjct: 26730254 gccggcgctggccgagctcctccgccgcg 26730282
>emb|AL831803.4|CNS08CAG Oryza sativa chromosome 12, . BAC OSJNBb0016P08 of library OSJNBb from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 142370 Score = 42.1 bits (21), Expect = 1.5 Identities = 27/29 (93%) Strand = Plus / Plus Query: 117 gccggccctcgccgagctcctccgccgcg 145 |||||| || ||||||||||||||||||| Sbjct: 6051 gccggcgctggccgagctcctccgccgcg 6079
>ref|NM_195016.1| Oryza sativa (japonica cultivar-group) hypothetical protein (OSJNBb0015J03.16), mRNA Length = 687 Score = 40.1 bits (20), Expect = 5.9 Identities = 33/36 (91%), Gaps = 1/36 (2%) Strand = Plus / Minus Query: 109 gccgccgcgccggccctcgccgagctcctccgccgc 144 |||||||||||| | ||||||||||||| ||||||| Sbjct: 570 gccgccgcgccg-cgctcgccgagctccgccgccgc 536
>gb|AC134053.4| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBb0005H02, complete sequence Length = 144882 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 122 ccctcgccgagctcctccgc 141 |||||||||||||||||||| Sbjct: 134984 ccctcgccgagctcctccgc 135003
>gb|AC146521.2| Oryza sativa chromosome 3 B1246D11 genomic sequence, complete sequence Length = 43277 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 243 cctccgccgcatccgctccc 262 |||||||||||||||||||| Sbjct: 32481 cctccgccgcatccgctccc 32500
>ref|XM_607812.2| PREDICTED: Bos taurus similar to XK-related protein 5a (LOC529365), mRNA Length = 2547 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 39 gcggccgcagcccccggcgg 58 |||||||||||||||||||| Sbjct: 2083 gcggccgcagcccccggcgg 2064
>gb|BC056837.1| Danio rerio zgc:63840, mRNA (cDNA clone MGC:63840 IMAGE:3817221), complete cds Length = 3686 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 85 cacttcgcctccgccgaggacctg 108 |||||| ||||||||||||||||| Sbjct: 128 cacttcacctccgccgaggacctg 151
>gb|AC119678.4| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0005H23, complete sequence Length = 32949 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 122 ccctcgccgagctcctccgc 141 |||||||||||||||||||| Sbjct: 1450 ccctcgccgagctcctccgc 1469
>gb|CP000360.1| Acidobacteria bacterium Ellin345, complete genome Length = 5650368 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 120 ggccctcgccgagctcctcc 139 |||||||||||||||||||| Sbjct: 3680255 ggccctcgccgagctcctcc 3680236
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 243 cctccgccgcatccgctccc 262 |||||||||||||||||||| Sbjct: 15154586 cctccgccgcatccgctccc 15154567
>ref|XM_844228.1| PREDICTED: Canis familiaris similar to CC chemokine receptor 10 (LOC607528), mRNA Length = 1093 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 31 tcacccccgcggccgcagcccccg 54 |||||||||||||||| ||||||| Sbjct: 1002 tcacccccgcggccgctgcccccg 1025
>emb|CR706242.2|CNS0G7VY Tetraodon nigroviridis full-length cDNA Length = 1141 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 194 cgtccggctccgcctcctgg 213 |||||||||||||||||||| Sbjct: 120 cgtccggctccgcctcctgg 139
>ref|NM_200626.1| Danio rerio zgc:63840 (zgc:63840), mRNA Length = 3686 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 85 cacttcgcctccgccgaggacctg 108 |||||| ||||||||||||||||| Sbjct: 128 cacttcacctccgccgaggacctg 151
>gb|AC116603.1| Oryza sativa (japonica cultivar-group) chromosome 10 clone OSJNBb0015J03, complete sequence Length = 135940 Score = 40.1 bits (20), Expect = 5.9 Identities = 33/36 (91%), Gaps = 1/36 (2%) Strand = Plus / Minus Query: 109 gccgccgcgccggccctcgccgagctcctccgccgc 144 |||||||||||| | ||||||||||||| ||||||| Sbjct: 91370 gccgccgcgccg-cgctcgccgagctccgccgccgc 91336
>gb|AC091733.3| Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNBa0048F08, from chromosome 3, complete sequence Length = 155790 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 243 cctccgccgcatccgctccc 262 |||||||||||||||||||| Sbjct: 187 cctccgccgcatccgctccc 206
>gb|AE017285.1| Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough, complete genome Length = 3570858 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 216 cgcccgctccgccgaggccc 235 |||||||||||||||||||| Sbjct: 757921 cgcccgctccgccgaggccc 757902
>gb|AC023190.4|AC023190 Homo sapiens chromosome 15, clone RP11-231A23, complete sequence Length = 66008 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 403 ggtaacctagaagatgcagc 422 |||||||||||||||||||| Sbjct: 51514 ggtaacctagaagatgcagc 51533
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 40.1 bits (20), Expect = 5.9 Identities = 33/36 (91%), Gaps = 1/36 (2%) Strand = Plus / Plus Query: 109 gccgccgcgccggccctcgccgagctcctccgccgc 144 |||||||||||| | ||||||||||||| ||||||| Sbjct: 4201090 gccgccgcgccg-cgctcgccgagctccgccgccgc 4201124
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 243 cctccgccgcatccgctccc 262 |||||||||||||||||||| Sbjct: 15149120 cctccgccgcatccgctccc 15149101
>dbj|AP005645.1| Streptomyces avermitilis MA-4680 plasmid SAP1 DNA, complete sequence Length = 94287 Score = 40.1 bits (20), Expect = 5.9 Identities = 26/28 (92%) Strand = Plus / Minus Query: 90 cgcctccgccgaggacctggccgccgcg 117 |||||||| |||||||||||| |||||| Sbjct: 92250 cgcctccgacgaggacctggcggccgcg 92223
>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome Length = 9025608 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 89 tcgcctccgccgaggacctg 108 |||||||||||||||||||| Sbjct: 3598751 tcgcctccgccgaggacctg 3598732 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 97 gccgaggacctggccgccgc 116 |||||||||||||||||||| Sbjct: 2358567 gccgaggacctggccgccgc 2358586
>dbj|AP008226.1| Thermus thermophilus HB8 genomic DNA, complete genome Length = 1849742 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 153 ggggctcgaggcgtccctcc 172 |||||||||||||||||||| Sbjct: 380546 ggggctcgaggcgtccctcc 380565
>emb|AJ005576.1|SGR005576 Streptomyces griseus minD gene Length = 2180 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 38 cgcggccgcagcccccggcggcga 61 ||||||||| |||||||||||||| Sbjct: 152 cgcggccgccgcccccggcggcga 129
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 40.1 bits (20), Expect = 5.9 Identities = 33/36 (91%), Gaps = 1/36 (2%) Strand = Plus / Plus Query: 109 gccgccgcgccggccctcgccgagctcctccgccgc 144 |||||||||||| | ||||||||||||| ||||||| Sbjct: 4201911 gccgccgcgccg-cgctcgccgagctccgccgccgc 4201945
>emb|AL939130.1|SCO939130 Streptomyces coelicolor A3(2) complete genome; segment 27/29 Length = 303450 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 108 ggccgccgcgccggccctcgccga 131 ||||||||||| |||||||||||| Sbjct: 274344 ggccgccgcgcaggccctcgccga 274367 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 105 cctggccgccgcgccggccc 124 |||||||||||||||||||| Sbjct: 99672 cctggccgccgcgccggccc 99653
>gb|AE017221.1| Thermus thermophilus HB27, complete genome Length = 1894877 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 153 ggggctcgaggcgtccctcc 172 |||||||||||||||||||| Sbjct: 30197 ggggctcgaggcgtccctcc 30216
>dbj|AB070940.1| Streptomyces avermitilis oligomycin biosynthetic gene cluster Length = 104326 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 89 tcgcctccgccgaggacctg 108 |||||||||||||||||||| Sbjct: 39054 tcgcctccgccgaggacctg 39073 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,685,523 Number of Sequences: 3902068 Number of extensions: 2685523 Number of successful extensions: 77779 Number of sequences better than 10.0: 69 Number of HSP's better than 10.0 without gapping: 67 Number of HSP's successfully gapped in prelim test: 4 Number of HSP's that attempted gapping in prelim test: 74939 Number of HSP's gapped (non-prelim): 2848 length of query: 442 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 420 effective length of database: 17,147,199,772 effective search space: 7201823904240 effective search space used: 7201823904240 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
