>ATIN_BHV1P (P30020) Alpha trans-inducing protein (Alpha-TIF)|
          Length = 504

 Score = 31.6 bits (70), Expect = 0.87
 Identities = 19/39 (48%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
 Frame = +2

Query: 311 PDPPPVRLGQPGAHGLAR-RGCPPPRHACQGPGQELAGR 424
           P P PVR G     GL+R RG P P  AC GP +   GR
Sbjct: 443 PGPSPVRSGL----GLSRARGSPGPGPACGGPSRARGGR 477

>NOTC4_MOUSE (P31695) Neurogenic locus notch homolog protein 4 precursor (Notch 4)|
            [Contains: Transforming protein Int-3; Notch 4
            extracellular truncation; Notch 4 intracellular domain]
          Length = 1964

 Score = 30.8 bits (68), Expect = 1.5
 Identities = 18/42 (42%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
 Frame = +2

Query: 311  PDPPPVRLGQPGAHGLARRGCPPPRHA-CQGPGQELAGRGCS 433
            PD P  R  +PGA G   RG      A C GPG +  G  CS
Sbjct: 1159 PDSPGPRCQRPGASGCEGRGGDGTCDAGCSGPGGDWDGGDCS 1200

>YP85_CAEEL (Q09442) Putative RNA-binding protein C08B11.5|
          Length = 388

 Score = 30.0 bits (66), Expect = 2.5
 Identities = 16/44 (36%), Positives = 18/44 (40%), Gaps = 12/44 (27%)
 Frame = +2

Query: 311 PDPPPVRLGQPGAHGL------------ARRGCPPPRHACQGPG 406
           P PPP R G PG  G+                 PPPR+   GPG
Sbjct: 318 PPPPPSRFGPPGMGGMPPPPPPGMRYPGGMPPPPPPRYPSAGPG 361

>TAF4_HUMAN (O00268) Transcription initiation factor TFIID subunit 4|
           (Transcription initiation factor TFIID 135 kDa subunit)
           (TAF(II)135) (TAFII-135) (TAFII135) (TAFII-130)
           (TAFII130)
          Length = 1085

 Score = 29.3 bits (64), Expect = 4.3
 Identities = 12/25 (48%), Positives = 14/25 (56%)
 Frame = +2

Query: 311 PDPPPVRLGQPGAHGLARRGCPPPR 385
           P+PPP    +PG  G  R G P PR
Sbjct: 87  PEPPPAGRARPGGGGPQRPGPPSPR 111

>SAM68_CHICK (Q8UUW7) KH domain-containing, RNA-binding, signal|
           transduction-associated protein 1 (Src-associated in
           mitosis 68 kDa protein) (Sam68)
          Length = 433

 Score = 28.9 bits (63), Expect = 5.7
 Identities = 16/37 (43%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
 Frame = +2

Query: 314 DPPPVRLGQ-PGAHGLARRGCPPPRHACQGPGQELAG 421
           D    R+G+ PG  G AR+G P PR + +G G   AG
Sbjct: 5   DDSSARMGRGPGGPGSARQGGPNPRRSPRGGGGRGAG 41

>GFRA4_HUMAN (Q9GZZ7) GDNF family receptor alpha-4 precursor (GFR-alpha-4)|
           (Persephin receptor)
          Length = 299

 Score = 28.5 bits (62), Expect = 7.4
 Identities = 13/36 (36%), Positives = 15/36 (41%)
 Frame = +2

Query: 317 PPPVRLGQPGAHGLARRGCPPPRHACQGPGQELAGR 424
           PP  +   PG  GL       PR    GPG+ L  R
Sbjct: 153 PPAAQASPPGLSGLVHPSAQRPRRLPAGPGRPLPAR 188

>SSXT_HUMAN (Q15532) SSXT protein (Synovial sarcoma, translocated to X|
           chromosome) (SYT protein)
          Length = 418

 Score = 28.1 bits (61), Expect = 9.7
 Identities = 15/38 (39%), Positives = 21/38 (55%), Gaps = 2/38 (5%)
 Frame = +2

Query: 317 PPPVRLGQ--PGAHGLARRGCPPPRHACQGPGQELAGR 424
           PP   +GQ   G H + +R  PP R   QGP Q+ +G+
Sbjct: 230 PPMGMMGQVNQGNHMMGQRQIPPYRPPQQGPPQQYSGQ 267

>ZNHI4_HUMAN (Q9C086) Zinc finger HIT domain-containing protein 4|
           (PAP-1-associated protein 1) (PAPA-1) (High mobility
           group AT-hook 1-like 4)
          Length = 343

 Score = 28.1 bits (61), Expect = 9.7
 Identities = 17/43 (39%), Positives = 18/43 (41%), Gaps = 1/43 (2%)
 Frame = +2

Query: 311 PDPPPVRLGQPGAHGLARRGCPPPR-HACQGPGQELAGRGCSR 436
           P  PP R   PG        CP PR +AC   GQ L    C R
Sbjct: 289 PSGPPPRCSVPG--------CPHPRRYACSRTGQALCSLQCYR 323

>PYGO_DROME (Q9V9W8) Protein pygopus (Protein gammy legs)|
          Length = 815

 Score = 28.1 bits (61), Expect = 9.7
 Identities = 15/35 (42%), Positives = 17/35 (48%)
 Frame = +2

Query: 317 PPPVRLGQPGAHGLARRGCPPPRHACQGPGQELAG 421
           PPP  +G PG HG    G PP  H   GP   + G
Sbjct: 596 PPPHMMGGPGMHG-GPAGMPP--HMGGGPNPHMMG 627

>RARB_MOUSE (P22605) Retinoic acid receptor beta (RAR-beta)|
          Length = 482

 Score = 28.1 bits (61), Expect = 9.7
 Identities = 17/41 (41%), Positives = 19/41 (46%), Gaps = 1/41 (2%)
 Frame = +2

Query: 317 PPPVR-LGQPGAHGLARRGCPPPRHACQGPGQELAGRGCSR 436
           PP +R L  P  HGL   G PPP   C  P     G+ C R
Sbjct: 30  PPVIRGLSLPPLHGL--HGHPPPS-GCSTPSPASVGQACQR 67


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.315    0.142    0.512 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 27,537,003
Number of Sequences: 219361
Number of extensions: 408284
Number of successful extensions: 1243
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1025
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1226
length of database: 80,573,946
effective HSP length: 101
effective length of database: 58,418,485
effective search space used: 2511994855
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)