ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl08g09 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AB028870.1| Hordeum vulgare Hv-MMT1 mRNA for S-adenosyl-L-methionine: L-methionine S-methyltransferase, complete cds Length = 3543 Score = 454 bits (229), Expect = e-125 Identities = 232/233 (99%) Strand = Plus / Plus Query: 7 ccaacccatcacctcctgctcctgctcttcccactcgaacccactcgaaggtaccgaacc 66 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1 ccaacccatcacctcctgctcctgctcttcccactcgaacccactcgaaggtaccgaacc 60 Query: 67 gagcgtccagagccgtccgggaatggctgcggcggcgggggacgtggaggcgttcctggc 126 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 61 gagcgtccagagccgtccgggaatggctgcggcggcgggggacgtggaggcgttcctggc 120 Query: 127 ggcgtgccaggcgttgggcgacgcggcgtacggcgccgccaaggccgtgctggagcggct 186 |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 121 ggcgtgccaggcgtcgggcgacgcggcgtacggcgccgccaaggccgtgctggagcggct 180 Query: 187 cgaggcgccggccacgcgcgccgaggccaggcggctcctcggcgccgtgcgac 239 ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 181 cgaggcgccggccacgcgcgccgaggccaggcggctcctcggcgccgtgcgac 233
>ref|XM_475069.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 3255 Score = 73.8 bits (37), Expect = 2e-10 Identities = 103/125 (82%) Strand = Plus / Plus Query: 110 gtggaggcgttcctggcggcgtgccaggcgttgggcgacgcggcgtacggcgccgccaag 169 |||||| | ||||||||| ||||| ||| | |||||||||||||||||||| |||||| Sbjct: 19 gtggagtccttcctggcgacgtgcgcggcctccggcgacgcggcgtacggcgcagccaag 78 Query: 170 gccgtgctggagcggctcgaggcgccggccacgcgcgccgaggccaggcggctcctcggc 229 |||||||| ||||| ||| ||| || ||| | ||| |||| ||| | || ||||||||| Sbjct: 79 gccgtgctcgagcgcctccaggaccccgcctcccgccccgacgcccgccgcctcctcggc 138 Query: 230 gccgt 234 ||||| Sbjct: 139 gccgt 143
>gb|AC104285.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBb0035J08, complete sequence Length = 117555 Score = 73.8 bits (37), Expect = 2e-10 Identities = 103/125 (82%) Strand = Plus / Minus Query: 110 gtggaggcgttcctggcggcgtgccaggcgttgggcgacgcggcgtacggcgccgccaag 169 |||||| | ||||||||| ||||| ||| | |||||||||||||||||||| |||||| Sbjct: 18718 gtggagtccttcctggcgacgtgcgcggcctccggcgacgcggcgtacggcgcagccaag 18659 Query: 170 gccgtgctggagcggctcgaggcgccggccacgcgcgccgaggccaggcggctcctcggc 229 |||||||| ||||| ||| ||| || ||| | ||| |||| ||| | || ||||||||| Sbjct: 18658 gccgtgctcgagcgcctccaggaccccgcctcccgccccgacgcccgccgcctcctcggc 18599 Query: 230 gccgt 234 ||||| Sbjct: 18598 gccgt 18594
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 73.8 bits (37), Expect = 2e-10 Identities = 103/125 (82%) Strand = Plus / Minus Query: 110 gtggaggcgttcctggcggcgtgccaggcgttgggcgacgcggcgtacggcgccgccaag 169 |||||| | ||||||||| ||||| ||| | |||||||||||||||||||| |||||| Sbjct: 243198 gtggagtccttcctggcgacgtgcgcggcctccggcgacgcggcgtacggcgcagccaag 243139 Query: 170 gccgtgctggagcggctcgaggcgccggccacgcgcgccgaggccaggcggctcctcggc 229 |||||||| ||||| ||| ||| || ||| | ||| |||| ||| | || ||||||||| Sbjct: 243138 gccgtgctcgagcgcctccaggaccccgcctcccgccccgacgcccgccgcctcctcggc 243079 Query: 230 gccgt 234 ||||| Sbjct: 243078 gccgt 243074
>dbj|AK121285.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023108O11, full insert sequence Length = 3542 Score = 73.8 bits (37), Expect = 2e-10 Identities = 103/125 (82%) Strand = Plus / Plus Query: 110 gtggaggcgttcctggcggcgtgccaggcgttgggcgacgcggcgtacggcgccgccaag 169 |||||| | ||||||||| ||||| ||| | |||||||||||||||||||| |||||| Sbjct: 97 gtggagtccttcctggcgacgtgcgcggcctccggcgacgcggcgtacggcgcagccaag 156 Query: 170 gccgtgctggagcggctcgaggcgccggccacgcgcgccgaggccaggcggctcctcggc 229 |||||||| ||||| ||| ||| || ||| | ||| |||| ||| | || ||||||||| Sbjct: 157 gccgtgctcgagcgcctccaggaccccgcctcccgccccgacgcccgccgcctcctcggc 216 Query: 230 gccgt 234 ||||| Sbjct: 217 gccgt 221
>gb|AC084818.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0668H12, complete sequence Length = 160603 Score = 73.8 bits (37), Expect = 2e-10 Identities = 103/125 (82%) Strand = Plus / Minus Query: 110 gtggaggcgttcctggcggcgtgccaggcgttgggcgacgcggcgtacggcgccgccaag 169 |||||| | ||||||||| ||||| ||| | |||||||||||||||||||| |||||| Sbjct: 125382 gtggagtccttcctggcgacgtgcgcggcctccggcgacgcggcgtacggcgcagccaag 125323 Query: 170 gccgtgctggagcggctcgaggcgccggccacgcgcgccgaggccaggcggctcctcggc 229 |||||||| ||||| ||| ||| || ||| | ||| |||| ||| | || ||||||||| Sbjct: 125322 gccgtgctcgagcgcctccaggaccccgcctcccgccccgacgcccgccgcctcctcggc 125263 Query: 230 gccgt 234 ||||| Sbjct: 125262 gccgt 125258
>gb|AF144079.1|AF144079 Zea mays S-adenosyl-L-methionine:L-methionine S-methyltransferase mRNA, complete cds Length = 3527 Score = 60.0 bits (30), Expect = 3e-06 Identities = 60/70 (85%) Strand = Plus / Plus Query: 136 ggcgttgggcgacgcggcgtacggcgccgccaaggccgtgctggagcggctcgaggcgcc 195 ||||| ||| ||||| ||||| |||||||||||||||||||| ||||| ||| | || || Sbjct: 60 ggcgtcgggagacgccgcgtatggcgccgccaaggccgtgctcgagcgcctccacgcccc 119 Query: 196 ggccacgcgc 205 ||||||||| Sbjct: 120 cgccacgcgc 129
>gb|AY109558.1| Zea mays CL1511_1 mRNA sequence Length = 3458 Score = 52.0 bits (26), Expect = 8e-04 Identities = 38/42 (90%) Strand = Plus / Plus Query: 136 ggcgttgggcgacgcggcgtacggcgccgccaaggccgtgct 177 ||||| ||| ||||| ||||| |||||||||||||||||||| Sbjct: 60 ggcgtcgggagacgccgcgtatggcgccgccaaggccgtgct 101
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 50.1 bits (25), Expect = 0.003 Identities = 25/25 (100%) Strand = Plus / Plus Query: 91 ggctgcggcggcgggggacgtggag 115 ||||||||||||||||||||||||| Sbjct: 27634434 ggctgcggcggcgggggacgtggag 27634458 Score = 40.1 bits (20), Expect = 3.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 91 ggctgcggcggcgggggacg 110 |||||||||||||||||||| Sbjct: 9470423 ggctgcggcggcgggggacg 9470442
>dbj|AP006060.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0135D07 Length = 170587 Score = 50.1 bits (25), Expect = 0.003 Identities = 25/25 (100%) Strand = Plus / Plus Query: 91 ggctgcggcggcgggggacgtggag 115 ||||||||||||||||||||||||| Sbjct: 114103 ggctgcggcggcgggggacgtggag 114127
>dbj|AP005775.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OSJNBb0005A04 Length = 140723 Score = 50.1 bits (25), Expect = 0.003 Identities = 25/25 (100%) Strand = Plus / Plus Query: 91 ggctgcggcggcgggggacgtggag 115 ||||||||||||||||||||||||| Sbjct: 20300 ggctgcggcggcgggggacgtggag 20324
>ref|XM_470527.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1152 Score = 44.1 bits (22), Expect = 0.20 Identities = 25/26 (96%) Strand = Plus / Plus Query: 205 cgccgaggccaggcggctcctcggcg 230 ||||||||||| |||||||||||||| Sbjct: 411 cgccgaggccatgcggctcctcggcg 436
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 44.1 bits (22), Expect = 0.20 Identities = 25/26 (96%) Strand = Plus / Minus Query: 205 cgccgaggccaggcggctcctcggcg 230 ||||||||||| |||||||||||||| Sbjct: 4123950 cgccgaggccatgcggctcctcggcg 4123925
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 44.1 bits (22), Expect = 0.20 Identities = 25/26 (96%) Strand = Plus / Minus Query: 205 cgccgaggccaggcggctcctcggcg 230 ||||||||||| |||||||||||||| Sbjct: 4124059 cgccgaggccatgcggctcctcggcg 4124034
>gb|AC125472.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBa0050H14, complete sequence Length = 142245 Score = 44.1 bits (22), Expect = 0.20 Identities = 25/26 (96%) Strand = Plus / Minus Query: 205 cgccgaggccaggcggctcctcggcg 230 ||||||||||| |||||||||||||| Sbjct: 24587 cgccgaggccatgcggctcctcggcg 24562
>dbj|AK109678.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-145-C05, full insert sequence Length = 1347 Score = 44.1 bits (22), Expect = 0.20 Identities = 25/26 (96%) Strand = Plus / Plus Query: 205 cgccgaggccaggcggctcctcggcg 230 ||||||||||| |||||||||||||| Sbjct: 444 cgccgaggccatgcggctcctcggcg 469
>gb|AC133006.6| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0072N24 map C61883S, complete sequence Length = 163337 Score = 42.1 bits (21), Expect = 0.78 Identities = 24/25 (96%) Strand = Plus / Minus Query: 94 tgcggcggcgggggacgtggaggcg 118 |||||||||| |||||||||||||| Sbjct: 53987 tgcggcggcgcgggacgtggaggcg 53963
>gb|AC104847.2| Oryza sativa (japonica cultivar-group) chromosome 11 PAC clone P0480H08, complete sequence Length = 156301 Score = 42.1 bits (21), Expect = 0.78 Identities = 21/21 (100%) Strand = Plus / Minus Query: 95 gcggcggcgggggacgtggag 115 ||||||||||||||||||||| Sbjct: 82044 gcggcggcgggggacgtggag 82024
>emb|BX640444.1| Bordetella bronchiseptica strain RB50, complete genome; segment 8/16 Length = 349008 Score = 42.1 bits (21), Expect = 0.78 Identities = 24/25 (96%) Strand = Plus / Plus Query: 186 tcgaggcgccggccacgcgcgccga 210 |||| |||||||||||||||||||| Sbjct: 27944 tcgacgcgccggccacgcgcgccga 27968
>emb|BX640426.1| Bordetella parapertussis strain 12822, complete genome; segment 4/14 Length = 348866 Score = 42.1 bits (21), Expect = 0.78 Identities = 24/25 (96%) Strand = Plus / Plus Query: 186 tcgaggcgccggccacgcgcgccga 210 |||| |||||||||||||||||||| Sbjct: 294539 tcgacgcgccggccacgcgcgccga 294563
>gb|AC104148.5| Drosophila melanogaster X BAC RP98-34O3 (Roswell Park Cancer Institute Drosophila BAC Library) complete sequence Length = 181395 Score = 42.1 bits (21), Expect = 0.78 Identities = 21/21 (100%) Strand = Plus / Minus Query: 12 ccatcacctcctgctcctgct 32 ||||||||||||||||||||| Sbjct: 145470 ccatcacctcctgctcctgct 145450
>ref|NM_166957.1| Drosophila melanogaster CG32793-RA (CG32793), mRNA Length = 2603 Score = 42.1 bits (21), Expect = 0.78 Identities = 21/21 (100%) Strand = Plus / Minus Query: 12 ccatcacctcctgctcctgct 32 ||||||||||||||||||||| Sbjct: 2073 ccatcacctcctgctcctgct 2053
>gb|AC098575.6| Drosophila melanogaster X BAC RP98-3D13 (Roswell Park Cancer Institute Drosophila BAC Library) complete sequence Length = 155685 Score = 42.1 bits (21), Expect = 0.78 Identities = 21/21 (100%) Strand = Plus / Plus Query: 12 ccatcacctcctgctcctgct 32 ||||||||||||||||||||| Sbjct: 132090 ccatcacctcctgctcctgct 132110
>emb|CR407046.1| Gallus gallus finished cDNA, clone ChEST1004o7 Length = 1160 Score = 42.1 bits (21), Expect = 0.78 Identities = 21/21 (100%) Strand = Plus / Plus Query: 11 cccatcacctcctgctcctgc 31 ||||||||||||||||||||| Sbjct: 113 cccatcacctcctgctcctgc 133
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 42.1 bits (21), Expect = 0.78 Identities = 21/21 (100%) Strand = Plus / Minus Query: 95 gcggcggcgggggacgtggag 115 ||||||||||||||||||||| Sbjct: 21324572 gcggcggcgggggacgtggag 21324552 Score = 42.1 bits (21), Expect = 0.78 Identities = 24/25 (96%) Strand = Plus / Minus Query: 94 tgcggcggcgggggacgtggaggcg 118 |||||||||| |||||||||||||| Sbjct: 9960206 tgcggcggcgcgggacgtggaggcg 9960182 Score = 40.1 bits (20), Expect = 3.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 96 cggcggcgggggacgtggaggcgt 119 |||||||||||| ||||||||||| Sbjct: 6518499 cggcggcgggggccgtggaggcgt 6518522
>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome Length = 9025608 Score = 42.1 bits (21), Expect = 0.78 Identities = 30/33 (90%) Strand = Plus / Plus Query: 149 gcggcgtacggcgccgccaaggccgtgctggag 181 |||||||||||||| |||||||| | ||||||| Sbjct: 7453617 gcggcgtacggcgcggccaaggcggggctggag 7453649
>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome Length = 5013479 Score = 42.1 bits (21), Expect = 0.78 Identities = 21/21 (100%) Strand = Plus / Plus Query: 174 tgctggagcggctcgaggcgc 194 ||||||||||||||||||||| Sbjct: 300158 tgctggagcggctcgaggcgc 300178 Score = 40.1 bits (20), Expect = 3.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 112 ggaggcgttcctggcggcgt 131 |||||||||||||||||||| Sbjct: 3935081 ggaggcgttcctggcggcgt 3935062 Score = 40.1 bits (20), Expect = 3.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 154 gtacggcgccgccaaggccg 173 |||||||||||||||||||| Sbjct: 2511966 gtacggcgccgccaaggccg 2511947
>gb|AE003425.3| Drosophila melanogaster chromosome X, section 9 of 74 of the complete sequence Length = 309053 Score = 42.1 bits (21), Expect = 0.78 Identities = 21/21 (100%) Strand = Plus / Minus Query: 12 ccatcacctcctgctcctgct 32 ||||||||||||||||||||| Sbjct: 298163 ccatcacctcctgctcctgct 298143
>gb|AE016825.1| Chromobacterium violaceum ATCC 12472, complete genome Length = 4751080 Score = 42.1 bits (21), Expect = 0.78 Identities = 21/21 (100%) Strand = Plus / Minus Query: 159 gcgccgccaaggccgtgctgg 179 ||||||||||||||||||||| Sbjct: 1015475 gcgccgccaaggccgtgctgg 1015455
>gb|AE017125.1| Helicobacter hepaticus ATCC 51449, complete genome Length = 1799146 Score = 42.1 bits (21), Expect = 0.78 Identities = 21/21 (100%) Strand = Plus / Minus Query: 13 catcacctcctgctcctgctc 33 ||||||||||||||||||||| Sbjct: 1676643 catcacctcctgctcctgctc 1676623
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 42.1 bits (21), Expect = 0.78 Identities = 21/21 (100%) Strand = Plus / Minus Query: 95 gcggcggcgggggacgtggag 115 ||||||||||||||||||||| Sbjct: 21634771 gcggcggcgggggacgtggag 21634751 Score = 42.1 bits (21), Expect = 0.78 Identities = 24/25 (96%) Strand = Plus / Minus Query: 94 tgcggcggcgggggacgtggaggcg 118 |||||||||| |||||||||||||| Sbjct: 10031903 tgcggcggcgcgggacgtggaggcg 10031879 Score = 40.1 bits (20), Expect = 3.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 96 cggcggcgggggacgtggaggcgt 119 |||||||||||| ||||||||||| Sbjct: 6584966 cggcggcgggggccgtggaggcgt 6584989
>gb|U22295.1|DMU22295 Drosophila melanogaster unknown protein mRNA, partial cds Length = 2006 Score = 42.1 bits (21), Expect = 0.78 Identities = 21/21 (100%) Strand = Plus / Minus Query: 12 ccatcacctcctgctcctgct 32 ||||||||||||||||||||| Sbjct: 1326 ccatcacctcctgctcctgct 1306
>gb|U22182.1|DMU22182 Drosophila melanogaster ORF1 and ORF2 genes, complete cds Length = 4358 Score = 42.1 bits (21), Expect = 0.78 Identities = 21/21 (100%) Strand = Plus / Minus Query: 12 ccatcacctcctgctcctgct 32 ||||||||||||||||||||| Sbjct: 3834 ccatcacctcctgctcctgct 3814
>emb|AL031366.1|DMC100G7 Drosophila melanogaster cosmid clone 100G7 Length = 40752 Score = 42.1 bits (21), Expect = 0.78 Identities = 21/21 (100%) Strand = Plus / Minus Query: 12 ccatcacctcctgctcctgct 32 ||||||||||||||||||||| Sbjct: 34499 ccatcacctcctgctcctgct 34479
>ref|NM_187935.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 315 Score = 40.1 bits (20), Expect = 3.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 95 gcggcggcgggggacgtggaggcg 118 |||||||||||||||| ||||||| Sbjct: 56 gcggcggcgggggacgaggaggcg 79
>gb|CP000148.1| Geobacter metallireducens GS-15, complete genome Length = 3997420 Score = 40.1 bits (20), Expect = 3.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 18 cctcctgctcctgctcttcc 37 |||||||||||||||||||| Sbjct: 3834811 cctcctgctcctgctcttcc 3834792
>ref|NM_196979.1| Oryza sativa (japonica cultivar-group) putative alcohol oxidase (OSJNBa0001K12.13), mRNA Length = 2271 Score = 40.1 bits (20), Expect = 3.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 106 ggacgtggaggcgttcctgg 125 |||||||||||||||||||| Sbjct: 1920 ggacgtggaggcgttcctgg 1939
>gb|BC040370.1| Mus musculus SEC24 related gene family, member C (S. cerevisiae), mRNA (cDNA clone MGC:25454 IMAGE:4239204), complete cds Length = 4439 Score = 40.1 bits (20), Expect = 3.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 15 tcacctcctgctcctgctct 34 |||||||||||||||||||| Sbjct: 819 tcacctcctgctcctgctct 838
>ref|NM_010928.1| Mus musculus Notch gene homolog 2 (Drosophila) (Notch2), mRNA Length = 7579 Score = 40.1 bits (20), Expect = 3.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 14 atcacctcctgctcctgctc 33 |||||||||||||||||||| Sbjct: 5017 atcacctcctgctcctgctc 4998
>ref|NM_172596.1| Mus musculus SEC24 related gene family, member C (S. cerevisiae) (Sec24c), mRNA Length = 4439 Score = 40.1 bits (20), Expect = 3.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 15 tcacctcctgctcctgctct 34 |||||||||||||||||||| Sbjct: 819 tcacctcctgctcctgctct 838
>gb|AC127417.3| Mus musculus BAC clone RP23-459M2 from chromosome 10, complete sequence Length = 192814 Score = 40.1 bits (20), Expect = 3.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 18 cctcctgctcctgctcttcc 37 |||||||||||||||||||| Sbjct: 8106 cctcctgctcctgctcttcc 8087
>gb|AC158547.7| Mus musculus chromosome 3, clone RP23-477L20, complete sequence Length = 182793 Score = 40.1 bits (20), Expect = 3.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 18 cctcctgctcctgctcttcc 37 |||||||||||||||||||| Sbjct: 54361 cctcctgctcctgctcttcc 54342
>gb|AC132461.3| Mus musculus chromosome 5 clone RP23-33C9, complete sequence Length = 196803 Score = 40.1 bits (20), Expect = 3.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 18 cctcctgctcctgctcttcc 37 |||||||||||||||||||| Sbjct: 65997 cctcctgctcctgctcttcc 65978
>gb|AY280634.1| Uncultured bacterium cosmid pbiov sequence Length = 37440 Score = 40.1 bits (20), Expect = 3.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 157 cggcgccgccaaggccgtgctgga 180 ||||||||||| |||||||||||| Sbjct: 1071 cggcgccgccatggccgtgctgga 1048
>gb|AC129773.4| Mus musculus BAC clone RP24-73D4 from chromosome 19, complete sequence Length = 218771 Score = 40.1 bits (20), Expect = 3.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 3 ctcaccaacccatcacctcctgct 26 ||||||||||||||| |||||||| Sbjct: 111524 ctcaccaacccatcaactcctgct 111547
>gb|AC121771.3| Mus musculus BAC clone RP23-348H21 from chromosome 3, complete sequence Length = 190309 Score = 40.1 bits (20), Expect = 3.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 14 atcacctcctgctcctgctc 33 |||||||||||||||||||| Sbjct: 37878 atcacctcctgctcctgctc 37859
>gb|AC098712.3| Mus musculus BAC clone RP23-2A21 from 10, complete sequence Length = 205054 Score = 40.1 bits (20), Expect = 3.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 18 cctcctgctcctgctcttcc 37 |||||||||||||||||||| Sbjct: 171856 cctcctgctcctgctcttcc 171837
>gb|AC124194.3| Mus musculus BAC clone RP23-277L21 from 2, complete sequence Length = 181676 Score = 40.1 bits (20), Expect = 3.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 18 cctcctgctcctgctcttcc 37 |||||||||||||||||||| Sbjct: 44164 cctcctgctcctgctcttcc 44183 Score = 40.1 bits (20), Expect = 3.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 18 cctcctgctcctgctcttcc 37 |||||||||||||||||||| Sbjct: 44032 cctcctgctcctgctcttcc 44051
>gb|AC121599.3| Mus musculus BAC clone RP23-300H21 from 14, complete sequence Length = 218747 Score = 40.1 bits (20), Expect = 3.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 15 tcacctcctgctcctgctct 34 |||||||||||||||||||| Sbjct: 53936 tcacctcctgctcctgctct 53955
>gb|AC164702.2| Mus musculus BAC clone RP23-402H19 from chromosome 10, complete sequence Length = 208221 Score = 40.1 bits (20), Expect = 3.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 18 cctcctgctcctgctcttcc 37 |||||||||||||||||||| Sbjct: 206894 cctcctgctcctgctcttcc 206875
>gb|AC124108.15| Mus musculus chromosome 1, clone RP24-340N18, complete sequence Length = 178775 Score = 40.1 bits (20), Expect = 3.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 18 cctcctgctcctgctcttcc 37 |||||||||||||||||||| Sbjct: 98787 cctcctgctcctgctcttcc 98806
>gb|AY305378.1| Ralstonia eutropha H16 megaplasmid pHG1, complete sequence Length = 452156 Score = 40.1 bits (20), Expect = 3.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 169 ggccgtgctggagcggctcg 188 |||||||||||||||||||| Sbjct: 446987 ggccgtgctggagcggctcg 446968
>ref|XM_501233.1| Yarrowia lipolytica CLIB122, YALI0B22704g predicted mRNA Length = 4824 Score = 40.1 bits (20), Expect = 3.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 18 cctcctgctcctgctcttcc 37 |||||||||||||||||||| Sbjct: 4561 cctcctgctcctgctcttcc 4542
>gb|CP000283.1| Rhodopseudomonas palustris BisB5, complete genome Length = 4892717 Score = 40.1 bits (20), Expect = 3.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 154 gtacggcgccgccaaggccg 173 |||||||||||||||||||| Sbjct: 864934 gtacggcgccgccaaggccg 864953
>emb|CR555306.1| Azoarcus sp. EbN1 complete genome Length = 4296230 Score = 40.1 bits (20), Expect = 3.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 127 ggcgtgccaggcgttgggcg 146 |||||||||||||||||||| Sbjct: 1798849 ggcgtgccaggcgttgggcg 1798830
>emb|BX571965.1| Burkholderia pseudomallei strain K96243, chromosome 1, complete sequence Length = 4074542 Score = 40.1 bits (20), Expect = 3.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 190 ggcgccggccacgcgcgccg 209 |||||||||||||||||||| Sbjct: 1295611 ggcgccggccacgcgcgccg 1295630
>gb|AC098801.2| Drosophila melanogaster 3L BAC RP98-12G7 (Roswell Park Cancer Institute Drosophila BAC Library) complete sequence Length = 178563 Score = 40.1 bits (20), Expect = 3.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 97 ggcggcgggggacgtggaggcgtt 120 |||||||||||| ||||||||||| Sbjct: 151466 ggcggcgggggaggtggaggcgtt 151443
>gb|AC091207.3| Drosophila melanogaster 3L BAC RP98-12P14 (Roswell Park Cancer Institute Drosophila BAC Library) complete sequence Length = 160504 Score = 40.1 bits (20), Expect = 3.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 97 ggcggcgggggacgtggaggcgtt 120 |||||||||||| ||||||||||| Sbjct: 57568 ggcggcgggggaggtggaggcgtt 57545
>gb|DQ397596.1| Cenarchaeum symbiosum clone C05E01, complete sequence Length = 42625 Score = 40.1 bits (20), Expect = 3.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 167 aaggccgtgctggagcggct 186 |||||||||||||||||||| Sbjct: 39848 aaggccgtgctggagcggct 39867
>gb|DQ397592.1| Cenarchaeum symbiosum clone C03A04, complete sequence Length = 41463 Score = 40.1 bits (20), Expect = 3.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 167 aaggccgtgctggagcggct 186 |||||||||||||||||||| Sbjct: 7062 aaggccgtgctggagcggct 7043
>gb|CP000301.1| Rhodopseudomonas palustris BisB18, complete genome Length = 5513844 Score = 40.1 bits (20), Expect = 3.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 182 cggctcgaggcgccggccac 201 |||||||||||||||||||| Sbjct: 188482 cggctcgaggcgccggccac 188501
>gb|AC090495.5| Genomic sequence for Mus musculus, clone RP23-60B7, complete sequence Length = 82400 Score = 40.1 bits (20), Expect = 3.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 18 cctcctgctcctgctcttcc 37 |||||||||||||||||||| Sbjct: 22853 cctcctgctcctgctcttcc 22872 Score = 40.1 bits (20), Expect = 3.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 18 cctcctgctcctgctcttcc 37 |||||||||||||||||||| Sbjct: 22667 cctcctgctcctgctcttcc 22686 Score = 40.1 bits (20), Expect = 3.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 18 cctcctgctcctgctcttcc 37 |||||||||||||||||||| Sbjct: 22649 cctcctgctcctgctcttcc 22668 Score = 40.1 bits (20), Expect = 3.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 18 cctcctgctcctgctcttcc 37 |||||||||||||||||||| Sbjct: 22592 cctcctgctcctgctcttcc 22611
>gb|AY118564.1| Drosophila melanogaster LD40028 full insert cDNA Length = 2522 Score = 40.1 bits (20), Expect = 3.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 97 ggcggcgggggacgtggaggcgtt 120 |||||||||||| ||||||||||| Sbjct: 448 ggcggcgggggaggtggaggcgtt 471
>gb|AE012387.1| Xanthomonas campestris pv. campestris str. ATCC 33913, section 295 of 460 of the complete genome Length = 9939 Score = 40.1 bits (20), Expect = 3.1 Identities = 29/32 (90%) Strand = Plus / Plus Query: 146 gacgcggcgtacggcgccgccaaggccgtgct 177 |||||||| | |||||||||||| |||||||| Sbjct: 8645 gacgcggcctccggcgccgccaacgccgtgct 8676
>ref|NM_168111.3| Drosophila melanogaster CG32423-RA, transcript variant A (CG32423), mRNA Length = 3047 Score = 40.1 bits (20), Expect = 3.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 97 ggcggcgggggacgtggaggcgtt 120 |||||||||||| ||||||||||| Sbjct: 448 ggcggcgggggaggtggaggcgtt 471
>gb|AC119072.1| Oryza sativa ssp. japonica cv. Nipponbare OSJNBa0073N20 BAC genomic sequence, complete sequence Length = 147289 Score = 40.1 bits (20), Expect = 3.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 96 cggcggcgggggacgtggaggcgt 119 |||||||||||| ||||||||||| Sbjct: 25731 cggcggcgggggccgtggaggcgt 25708
>dbj|AK155666.1| Mus musculus B6-derived CD11 +ve dendritic cells cDNA, RIKEN full-length enriched library, clone:F730116C03 product:Notch gene homolog 2 (Drosophila), full insert sequence Length = 3463 Score = 40.1 bits (20), Expect = 3.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 14 atcacctcctgctcctgctc 33 |||||||||||||||||||| Sbjct: 1825 atcacctcctgctcctgctc 1806
>dbj|AK155137.1| Mus musculus NOD-derived CD11c +ve dendritic cells cDNA, RIKEN full-length enriched library, clone:F630203H03 product:Notch gene homolog 2 (Drosophila), full insert sequence Length = 3463 Score = 40.1 bits (20), Expect = 3.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 14 atcacctcctgctcctgctc 33 |||||||||||||||||||| Sbjct: 1825 atcacctcctgctcctgctc 1806
>gb|AC078948.11| Oryza sativa chromosome 10 BAC OSJNBa0001K12 genomic sequence, complete sequence Length = 144724 Score = 40.1 bits (20), Expect = 3.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 106 ggacgtggaggcgttcctgg 125 |||||||||||||||||||| Sbjct: 87762 ggacgtggaggcgttcctgg 87781
>gb|AC107828.16| Mus musculus chromosome 18, clone RP23-213N4, complete sequence Length = 212092 Score = 40.1 bits (20), Expect = 3.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 18 cctcctgctcctgctcttcc 37 |||||||||||||||||||| Sbjct: 105920 cctcctgctcctgctcttcc 105901
>dbj|AK036519.1| Mus musculus adult male bone cDNA, RIKEN full-length enriched library, clone:9830126B01 product:PROTEIN TRANSPORT PROTEIN SEC24C (SEC24-RELATED PROTEIN C) homolog [Homo sapiens], full insert sequence Length = 3658 Score = 40.1 bits (20), Expect = 3.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 15 tcacctcctgctcctgctct 34 |||||||||||||||||||| Sbjct: 841 tcacctcctgctcctgctct 860
>gb|AC153658.4| Mus musculus BAC clone RP23-272J19 from chromosome 12, complete sequence Length = 202978 Score = 40.1 bits (20), Expect = 3.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 18 cctcctgctcctgctcttcc 37 |||||||||||||||||||| Sbjct: 131216 cctcctgctcctgctcttcc 131197 Score = 40.1 bits (20), Expect = 3.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 18 cctcctgctcctgctcttcc 37 |||||||||||||||||||| Sbjct: 131162 cctcctgctcctgctcttcc 131143
>gb|CP000050.1| Xanthomonas campestris pv. campestris str. 8004, complete genome Length = 5148708 Score = 40.1 bits (20), Expect = 3.1 Identities = 29/32 (90%) Strand = Plus / Minus Query: 146 gacgcggcgtacggcgccgccaaggccgtgct 177 |||||||| | |||||||||||| |||||||| Sbjct: 1654732 gacgcggcctccggcgccgccaacgccgtgct 1654701
>gb|AC068305.30|AC068305 Homo sapiens 12 BAC RP11-557F20 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 131811 Score = 40.1 bits (20), Expect = 3.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 25 ctcctgctcttcccactcga 44 |||||||||||||||||||| Sbjct: 5700 ctcctgctcttcccactcga 5719
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 40.1 bits (20), Expect = 3.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 85 gggaatggctgcggcggcgg 104 |||||||||||||||||||| Sbjct: 3242515 gggaatggctgcggcggcgg 3242496
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 40.1 bits (20), Expect = 3.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 106 ggacgtggaggcgttcctgg 125 |||||||||||||||||||| Sbjct: 17104574 ggacgtggaggcgttcctgg 17104555
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 40.1 bits (20), Expect = 3.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 81 gtccgggaatggctgcggcggcgg 104 ||||||||||||| |||||||||| Sbjct: 16593820 gtccgggaatggcggcggcggcgg 16593797
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 40.1 bits (20), Expect = 3.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 95 gcggcggcgggggacgtggaggcg 118 |||||||||||||||| ||||||| Sbjct: 8668576 gcggcggcgggggacgaggaggcg 8668599
>gb|AE004443.1| Pseudomonas aeruginosa PAO1, section 4 of 529 of the complete genome Length = 19372 Score = 40.1 bits (20), Expect = 3.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 160 cgccgccaaggccgtgctgg 179 |||||||||||||||||||| Sbjct: 875 cgccgccaaggccgtgctgg 856
>dbj|AP002525.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0462H08 Length = 139152 Score = 40.1 bits (20), Expect = 3.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 95 gcggcggcgggggacgtggaggcg 118 |||||||||||||||| ||||||| Sbjct: 100771 gcggcggcgggggacgaggaggcg 100794
>dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete genome Length = 9105828 Score = 40.1 bits (20), Expect = 3.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 163 cgccaaggccgtgctggagcggct 186 ||||||||||| |||||||||||| Sbjct: 4610591 cgccaaggccgcgctggagcggct 4610614
>dbj|AP004683.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0006C08 Length = 151987 Score = 40.1 bits (20), Expect = 3.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 91 ggctgcggcggcgggggacg 110 |||||||||||||||||||| Sbjct: 83984 ggctgcggcggcgggggacg 84003
>dbj|AP005720.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:OJ1123_B08 Length = 134028 Score = 40.1 bits (20), Expect = 3.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 81 gtccgggaatggctgcggcggcgg 104 ||||||||||||| |||||||||| Sbjct: 126045 gtccgggaatggcggcggcggcgg 126022
>dbj|AP005575.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:OJ1596_C06 Length = 124721 Score = 40.1 bits (20), Expect = 3.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 81 gtccgggaatggctgcggcggcgg 104 ||||||||||||| |||||||||| Sbjct: 1959 gtccgggaatggcggcggcggcgg 1936
>emb|AL929153.11| Mouse DNA sequence from clone RP23-55C8 on chromosome 2, complete sequence Length = 116887 Score = 40.1 bits (20), Expect = 3.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 18 cctcctgctcctgctcttcc 37 |||||||||||||||||||| Sbjct: 19821 cctcctgctcctgctcttcc 19802 Score = 40.1 bits (20), Expect = 3.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 18 cctcctgctcctgctcttcc 37 |||||||||||||||||||| Sbjct: 19689 cctcctgctcctgctcttcc 19670
>gb|AC154173.3| Mus musculus BAC clone RP23-3C4 from 3, complete sequence Length = 214016 Score = 40.1 bits (20), Expect = 3.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 14 atcacctcctgctcctgctc 33 |||||||||||||||||||| Sbjct: 60704 atcacctcctgctcctgctc 60723
>gb|AF159692.1|AF159692 Myxococcus xanthus serine/threonine kinase PKN12 (pkn12) gene, complete cds Length = 2672 Score = 40.1 bits (20), Expect = 3.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 167 aaggccgtgctggagcggct 186 |||||||||||||||||||| Sbjct: 1035 aaggccgtgctggagcggct 1054
>gb|AE003567.4| Drosophila melanogaster chromosome 3L, section 18 of 83 of the complete sequence Length = 166593 Score = 40.1 bits (20), Expect = 3.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 97 ggcggcgggggacgtggaggcgtt 120 |||||||||||| ||||||||||| Sbjct: 164796 ggcggcgggggaggtggaggcgtt 164773
>dbj|AK122199.1| Mus musculus mRNA for mKIAA0079 protein Length = 4196 Score = 40.1 bits (20), Expect = 3.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 15 tcacctcctgctcctgctct 34 |||||||||||||||||||| Sbjct: 522 tcacctcctgctcctgctct 541
>gb|CP000085.1| Burkholderia thailandensis E264 chromosome II, complete sequence Length = 2914771 Score = 40.1 bits (20), Expect = 3.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 190 ggcgccggccacgcgcgccg 209 |||||||||||||||||||| Sbjct: 1425261 ggcgccggccacgcgcgccg 1425242
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 40.1 bits (20), Expect = 3.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 106 ggacgtggaggcgttcctgg 125 |||||||||||||||||||| Sbjct: 17113614 ggacgtggaggcgttcctgg 17113595
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 40.1 bits (20), Expect = 3.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 85 gggaatggctgcggcggcgg 104 |||||||||||||||||||| Sbjct: 3242460 gggaatggctgcggcggcgg 3242441
>emb|AL713936.4|CNS07YPH Oryza sativa chromosome 12, . BAC OJ1057_G11 of library Monsanto from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 109081 Score = 40.1 bits (20), Expect = 3.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 85 gggaatggctgcggcggcgg 104 |||||||||||||||||||| Sbjct: 32901 gggaatggctgcggcggcgg 32882
>gb|AC125341.4| Mus musculus BAC clone RP24-459O3 from 6, complete sequence Length = 167607 Score = 40.1 bits (20), Expect = 3.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 21 cctgctcctgctcttcccac 40 |||||||||||||||||||| Sbjct: 102110 cctgctcctgctcttcccac 102129
>gb|AC122293.3| Mus musculus BAC clone RP23-257O9 from 10, complete sequence Length = 209942 Score = 40.1 bits (20), Expect = 3.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 18 cctcctgctcctgctcttcc 37 |||||||||||||||||||| Sbjct: 203462 cctcctgctcctgctcttcc 203481
>gb|AC124587.5| Mus musculus BAC clone RP23-132G24 from 1, complete sequence Length = 220046 Score = 40.1 bits (20), Expect = 3.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 18 cctcctgctcctgctcttcc 37 |||||||||||||||||||| Sbjct: 27208 cctcctgctcctgctcttcc 27189 Score = 40.1 bits (20), Expect = 3.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 18 cctcctgctcctgctcttcc 37 |||||||||||||||||||| Sbjct: 27151 cctcctgctcctgctcttcc 27132 Score = 40.1 bits (20), Expect = 3.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 18 cctcctgctcctgctcttcc 37 |||||||||||||||||||| Sbjct: 27133 cctcctgctcctgctcttcc 27114 Score = 40.1 bits (20), Expect = 3.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 18 cctcctgctcctgctcttcc 37 |||||||||||||||||||| Sbjct: 26947 cctcctgctcctgctcttcc 26928
>emb|CR382128.1| Yarrowia lipolytica chromosome B of strain CLIB122 of Yarrowia lipolytica Length = 3066374 Score = 40.1 bits (20), Expect = 3.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 18 cctcctgctcctgctcttcc 37 |||||||||||||||||||| Sbjct: 2980633 cctcctgctcctgctcttcc 2980652
>emb|AL928735.9| Mouse DNA sequence from clone RP23-413M3 on chromosome 2, complete sequence Length = 187287 Score = 40.1 bits (20), Expect = 3.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 18 cctcctgctcctgctcttcc 37 |||||||||||||||||||| Sbjct: 74521 cctcctgctcctgctcttcc 74540
>gb|AC121505.14| Mus musculus chromosome 8, clone RP24-144M14, complete sequence Length = 163953 Score = 40.1 bits (20), Expect = 3.1 Identities = 26/28 (92%) Strand = Plus / Plus Query: 3 ctcaccaacccatcacctcctgctcctg 30 |||||||||||||| |||||||||||| Sbjct: 118582 ctcaccaacccatccactcctgctcctg 118609
>dbj|D32210.1| Mus musculus (Notch2) mRNA, complete cds Length = 7579 Score = 40.1 bits (20), Expect = 3.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 14 atcacctcctgctcctgctc 33 |||||||||||||||||||| Sbjct: 5017 atcacctcctgctcctgctc 4998 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 1,694,110 Number of Sequences: 3902068 Number of extensions: 1694110 Number of successful extensions: 59124 Number of sequences better than 10.0: 100 Number of HSP's better than 10.0 without gapping: 104 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 56708 Number of HSP's gapped (non-prelim): 2416 length of query: 239 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 217 effective length of database: 17,147,199,772 effective search space: 3720942350524 effective search space used: 3720942350524 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
