ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl08g08 |
|---|---|
| Clone Library Name | barley_pub |
>IMB1_SCHPO (O13864) Importin beta-1 subunit (Karyopherin beta-1 subunit)| (Importin 95) Length = 863 Score = 40.4 bits (93), Expect = 0.002 Identities = 22/72 (30%), Positives = 36/72 (50%) Frame = +1 Query: 247 LDVTQILLSAQSADGSIRKHAEESLKQFQEQNLPGFXXXXXXELANNEKPEESRRLAGLI 426 ++ + L S D ++R +AE+ L+ + + ELAN+ R AGL Sbjct: 1 MNAGEFLAQTLSPDANVRLNAEKQLENAARTDFAQYMVLLAQELANDNSMPYIRMAAGLA 60 Query: 427 LKNALDAKEQHR 462 LKNA+ A+E+ R Sbjct: 61 LKNAITAREEAR 72
>IPO11_HUMAN (Q9UI26) Importin-11 (Imp11) (Ran-binding protein 11) (RanBP11)| Length = 975 Score = 38.1 bits (87), Expect = 0.011 Identities = 26/69 (37%), Positives = 34/69 (49%) Frame = +1 Query: 238 SMSLDVTQILLSAQSADGSIRKHAEESLKQFQEQNLPGFXXXXXXELANNEKPEESRRLA 417 S S V Q+L A S D ++ K AEE LKQ++ Q PGF N+ R LA Sbjct: 5 SASTVVLQVLTQATSQDTAVLKPAEEQLKQWETQ--PGFYSVLLNIFTNHTLDINVRWLA 62 Query: 418 GLILKNALD 444 L K+ +D Sbjct: 63 VLYFKHGID 71
>IPO11_MOUSE (Q8K2V6) Importin-11 (Imp11) (Ran-binding protein 11) (RanBP11)| Length = 975 Score = 37.7 bits (86), Expect = 0.015 Identities = 26/69 (37%), Positives = 34/69 (49%) Frame = +1 Query: 238 SMSLDVTQILLSAQSADGSIRKHAEESLKQFQEQNLPGFXXXXXXELANNEKPEESRRLA 417 S S V Q+L A S D ++ K AEE LKQ++ Q PGF N+ R LA Sbjct: 5 SASSVVLQVLTQATSQDTAVLKPAEEQLKQWETQ--PGFYSVLLNIFTNHTLDINVRWLA 62 Query: 418 GLILKNALD 444 L K+ +D Sbjct: 63 VLYFKHGID 71
>TNPO1_MOUSE (Q8BFY9) Transportin-1 (Importin beta-2) (Karyopherin beta-2)| Length = 890 Score = 33.9 bits (76), Expect = 0.21 Identities = 21/70 (30%), Positives = 40/70 (57%), Gaps = 1/70 (1%) Frame = +1 Query: 253 VTQILLSAQSADGSIRKHAEESLKQF-QEQNLPGFXXXXXXELANNEKPEESRRLAGLIL 429 + Q+L +QS D +I++ ++ L+Q Q + + +L + ++P +R L+GLIL Sbjct: 15 ILQLLKESQSPDTTIQRTVQQKLEQLNQYPDFNNYLIFVLTKLKSEDEP--TRSLSGLIL 72 Query: 430 KNALDAKEQH 459 KN + A Q+ Sbjct: 73 KNNVKAHFQN 82
>TNPO1_HUMAN (Q92973) Transportin-1 (Importin beta-2) (Karyopherin beta-2) (M9| region interaction protein) (MIP) Length = 890 Score = 33.9 bits (76), Expect = 0.21 Identities = 21/70 (30%), Positives = 40/70 (57%), Gaps = 1/70 (1%) Frame = +1 Query: 253 VTQILLSAQSADGSIRKHAEESLKQF-QEQNLPGFXXXXXXELANNEKPEESRRLAGLIL 429 + Q+L +QS D +I++ ++ L+Q Q + + +L + ++P +R L+GLIL Sbjct: 15 ILQLLKESQSPDTTIQRTVQQKLEQLNQYPDFNNYLIFVLTKLKSEDEP--TRSLSGLIL 72 Query: 430 KNALDAKEQH 459 KN + A Q+ Sbjct: 73 KNNVKAHFQN 82
>IMB_DROME (O18388) Importin beta subunit (Karyopherin beta-4 subunit)| (Protein ketel) Length = 884 Score = 33.5 bits (75), Expect = 0.28 Identities = 22/72 (30%), Positives = 33/72 (45%) Frame = +1 Query: 241 MSLDVTQILLSAQSADGSIRKHAEESLKQFQEQNLPGFXXXXXXELANNEKPEESRRLAG 420 +++ + IL S D + A+ L+Q NLP F L N +R AG Sbjct: 5 IAMQLIAILEKTVSPDKNELLSAKNFLEQAAASNLPEFLKALSEILVNTANSAVARMAAG 64 Query: 421 LILKNALDAKEQ 456 L LKN L +K++ Sbjct: 65 LQLKNHLTSKDE 76
>IMB1_MOUSE (P70168) Importin beta-1 subunit (Karyopherin beta-1 subunit)| (Nuclear factor P97) (Pore targeting complex 97 kDa subunit) (PTAC97) (SCG) Length = 876 Score = 33.1 bits (74), Expect = 0.36 Identities = 21/69 (30%), Positives = 36/69 (52%) Frame = +1 Query: 247 LDVTQILLSAQSADGSIRKHAEESLKQFQEQNLPGFXXXXXXELANNEKPEESRRLAGLI 426 +++ IL S D + A++ L++ +NLP F LAN + +R AGL Sbjct: 1 MELITILEKTVSPDRLELEAAQKFLERAAVENLPTFLVELSRVLANPGNSQVARVAAGLQ 60 Query: 427 LKNALDAKE 453 +KN+L +K+ Sbjct: 61 IKNSLTSKD 69
>IMB1_HUMAN (Q14974) Importin beta-1 subunit (Karyopherin beta-1 subunit)| (Nuclear factor P97) (Importin 90) Length = 876 Score = 33.1 bits (74), Expect = 0.36 Identities = 21/69 (30%), Positives = 36/69 (52%) Frame = +1 Query: 247 LDVTQILLSAQSADGSIRKHAEESLKQFQEQNLPGFXXXXXXELANNEKPEESRRLAGLI 426 +++ IL S D + A++ L++ +NLP F LAN + +R AGL Sbjct: 1 MELITILEKTVSPDRLELEAAQKFLERAAVENLPTFLVELSRVLANPGNSQVARVAAGLQ 60 Query: 427 LKNALDAKE 453 +KN+L +K+ Sbjct: 61 IKNSLTSKD 69
>TNPO2_MOUSE (Q99LG2) Transportin-2 (Karyopherin beta-2b)| Length = 887 Score = 31.6 bits (70), Expect = 1.1 Identities = 22/69 (31%), Positives = 36/69 (52%), Gaps = 1/69 (1%) Frame = +1 Query: 253 VTQILLSAQSADGSIRKHAEESLKQFQEQNLPGFXXXXXXELANNEKPEE-SRRLAGLIL 429 V Q+L +QS + + ++ ++ LKQ + P F L + +E +R L+GLIL Sbjct: 13 VLQLLKDSQSPNTATQRIVQDKLKQLNQ--FPDFNNYLIFVLTRLKSEDEPTRSLSGLIL 70 Query: 430 KNALDAKEQ 456 KN + A Q Sbjct: 71 KNNVKAHYQ 79
>TNPO2_HUMAN (O14787) Transportin-2 (Karyopherin beta-2b)| Length = 897 Score = 31.6 bits (70), Expect = 1.1 Identities = 22/69 (31%), Positives = 36/69 (52%), Gaps = 1/69 (1%) Frame = +1 Query: 253 VTQILLSAQSADGSIRKHAEESLKQFQEQNLPGFXXXXXXELANNEKPEE-SRRLAGLIL 429 V Q+L +QS + + ++ ++ LKQ + P F L + +E +R L+GLIL Sbjct: 13 VLQLLKDSQSPNTATQRIVQDKLKQLNQ--FPDFNNYLIFVLTRLKSEDEPTRSLSGLIL 70 Query: 430 KNALDAKEQ 456 KN + A Q Sbjct: 71 KNNVKAHYQ 79
>PARD3_RAT (Q9Z340) Partitioning-defective 3 homolog (PARD-3) (PAR-3)| (Atypical PKC isotype-specific-interacting protein) (ASIP) (Atypical PKC-specific-binding protein) (ASBP) Length = 1337 Score = 30.4 bits (67), Expect = 2.3 Identities = 20/58 (34%), Positives = 25/58 (43%), Gaps = 8/58 (13%) Frame = +2 Query: 92 GLAPSPNRRATASAPSRDLGRLKLRRAVQLRHT--------RRRQLPPHLSSQQEESA 241 GL SP R A S + G+ +L V + H R LPPHLS Q S+ Sbjct: 724 GLDESPTRNAALSRIMGESGKCQLSPTVNMPHDDTVMIEDDRLPVLPPHLSDQSSSSS 781
>PARD3_MOUSE (Q99NH2) Partitioning-defective 3 homolog (PARD-3) (PAR-3)| (Atypical PKC isotype-specific-interacting protein) (ASIP) (Ephrin-interacting protein) (PHIP) Length = 1333 Score = 30.0 bits (66), Expect = 3.1 Identities = 22/58 (37%), Positives = 27/58 (46%), Gaps = 8/58 (13%) Frame = +2 Query: 92 GLAPSPNRRATASAPSRDLGRLKLRRAVQLRHT--------RRRQLPPHLSSQQEESA 241 GL SP R A A SR +G+ +L V + H R LPPHLS Q S+ Sbjct: 724 GLDESPTRNA---ALSRIMGKCQLSPTVNMPHDDTVMIEDDRLPVLPPHLSDQSSSSS 778
>MDHP_MESCR (Q05145) Malate dehydrogenase [NADP], chloroplast precursor (EC| 1.1.1.82) (NADP-MDH) Length = 441 Score = 28.9 bits (63), Expect = 6.8 Identities = 16/55 (29%), Positives = 26/55 (47%) Frame = -3 Query: 429 EDQTSQPAALLRFLVVGQLT*EGEQKTWEVLLLKLLEAFFSMLSNRAISRLRTQE 265 E QT +P F + L E E KTW+ ++ + M+SN + +L + E Sbjct: 67 EGQTGKPECYGIFCLTYDLKAEEETKTWKKMITIAVSGAAGMISNHLLFKLASGE 121
>NMD5_YEAST (P46970) Nonsense-mediated mRNA decay protein 5| Length = 1048 Score = 28.5 bits (62), Expect = 8.9 Identities = 19/68 (27%), Positives = 33/68 (48%), Gaps = 3/68 (4%) Frame = +1 Query: 247 LDVTQIL---LSAQSADGSIRKHAEESLKQFQEQNLPGFXXXXXXELANNEKPEESRRLA 417 +D+T++L + ++R +AE LK + +PGF +A +E PE + A Sbjct: 1 MDITELLQCFACTLDHNAAVRTNAETHLKNASK--VPGFLGACLDIIAADEVPENIKLSA 58 Query: 418 GLILKNAL 441 L KN + Sbjct: 59 SLYFKNKI 66
>DP2L_THEVO (Q97CR6) DNA polymerase II large subunit (EC 2.7.7.7) (Pol II)| Length = 1088 Score = 28.5 bits (62), Expect = 8.9 Identities = 16/53 (30%), Positives = 28/53 (52%), Gaps = 8/53 (15%) Frame = +1 Query: 289 GSIRKHAEESLKQFQEQNLPGFXXXXXXELA--------NNEKPEESRRLAGL 423 GS+ K+ +E+LK +E N+P + LA + EKP+ + ++ GL Sbjct: 1033 GSVIKYLDETLKIEKEYNIPKYLKERIDNLARTIKETFPDEEKPDAAIKITGL 1085 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.312 0.128 0.345 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 45,358,271 Number of Sequences: 219361 Number of extensions: 717284 Number of successful extensions: 1479 Number of sequences better than 10.0: 15 Number of HSP's better than 10.0 without gapping: 1466 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1479 length of database: 80,573,946 effective HSP length: 102 effective length of database: 58,199,124 effective search space used: 3026354448 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.9 bits)
