ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl08g06 |
|---|---|
| Clone Library Name | barley_pub |
>IF2_SHIFL (Q83JF9) Translation initiation factor IF-2| Length = 882 Score = 35.0 bits (79), Expect = 0.081 Identities = 16/40 (40%), Positives = 25/40 (62%) Frame = -3 Query: 279 ERGRGRGRVAPSLRPRRGDERRASGEEQQEERASRASSHG 160 E GRGRGR A + RP++G++ S +++E RA+ G Sbjct: 240 EGGRGRGRNAKAARPKKGNKHAESKADREEARAAVRGGKG 279
>IF2_SHIBS (Q31W47) Translation initiation factor IF-2| Length = 882 Score = 35.0 bits (79), Expect = 0.081 Identities = 16/40 (40%), Positives = 25/40 (62%) Frame = -3 Query: 279 ERGRGRGRVAPSLRPRRGDERRASGEEQQEERASRASSHG 160 E GRGRGR A + RP++G++ S +++E RA+ G Sbjct: 240 EGGRGRGRNAKAARPKKGNKHAESKADREEARAAVRGGKG 279
>IF2_SHISS (Q3YX73) Translation initiation factor IF-2| Length = 890 Score = 35.0 bits (79), Expect = 0.081 Identities = 16/40 (40%), Positives = 25/40 (62%) Frame = -3 Query: 279 ERGRGRGRVAPSLRPRRGDERRASGEEQQEERASRASSHG 160 E GRGRGR A + RP++G++ S +++E RA+ G Sbjct: 248 EGGRGRGRNAKAARPKKGNKHAESKADREEARAAVRGGKG 287
>IF2_SHIDS (Q32BG5) Translation initiation factor IF-2| Length = 890 Score = 35.0 bits (79), Expect = 0.081 Identities = 16/40 (40%), Positives = 25/40 (62%) Frame = -3 Query: 279 ERGRGRGRVAPSLRPRRGDERRASGEEQQEERASRASSHG 160 E GRGRGR A + RP++G++ S +++E RA+ G Sbjct: 248 EGGRGRGRNAKAARPKKGNKHAESKADREEARAAVRGGKG 287
>IF2_ECOLI (P0A705) Translation initiation factor IF-2| Length = 890 Score = 35.0 bits (79), Expect = 0.081 Identities = 16/40 (40%), Positives = 25/40 (62%) Frame = -3 Query: 279 ERGRGRGRVAPSLRPRRGDERRASGEEQQEERASRASSHG 160 E GRGRGR A + RP++G++ S +++E RA+ G Sbjct: 248 EGGRGRGRNAKAARPKKGNKHAESKADREEARAAVRGGKG 287
>IF2_ECOL6 (P59587) Translation initiation factor IF-2| Length = 890 Score = 35.0 bits (79), Expect = 0.081 Identities = 16/40 (40%), Positives = 25/40 (62%) Frame = -3 Query: 279 ERGRGRGRVAPSLRPRRGDERRASGEEQQEERASRASSHG 160 E GRGRGR A + RP++G++ S +++E RA+ G Sbjct: 248 EGGRGRGRNAKAARPKKGNKHAESKADREEARAAVRGGKG 287
>IF2_ECO57 (P0A706) Translation initiation factor IF-2| Length = 890 Score = 35.0 bits (79), Expect = 0.081 Identities = 16/40 (40%), Positives = 25/40 (62%) Frame = -3 Query: 279 ERGRGRGRVAPSLRPRRGDERRASGEEQQEERASRASSHG 160 E GRGRGR A + RP++G++ S +++E RA+ G Sbjct: 248 EGGRGRGRNAKAARPKKGNKHAESKADREEARAAVRGGKG 287
>IF2_KLEOX (Q9ZF28) Translation initiation factor IF-2| Length = 896 Score = 30.4 bits (67), Expect = 2.0 Identities = 16/41 (39%), Positives = 25/41 (60%), Gaps = 1/41 (2%) Frame = -3 Query: 279 ERGRGRGRVAPSLRP-RRGDERRASGEEQQEERASRASSHG 160 E GRGRGR A + RP ++G++ S +++E RA+ G Sbjct: 252 EGGRGRGRNAKAARPAKKGNKHAESKADREEARAAVRGGKG 292
>ARTE_ARATH (Q9FYL3) Protein ARTEMIS, chloroplast precursor (Arabidopsis| thaliana envelope membrane integrase) (Ath4) (ALBINO3-like protein 1) Length = 1013 Score = 30.4 bits (67), Expect = 2.0 Identities = 11/23 (47%), Positives = 14/23 (60%) Frame = +1 Query: 292 DILLDCGATGKGDDTDGRQWAGD 360 DI +DCG++ D D R W GD Sbjct: 28 DISIDCGSSSSHIDADNRTWVGD 50
>IF2_SALTY (Q9ZF31) Translation initiation factor IF-2| Length = 892 Score = 30.0 bits (66), Expect = 2.6 Identities = 15/40 (37%), Positives = 22/40 (55%) Frame = -3 Query: 279 ERGRGRGRVAPSLRPRRGDERRASGEEQQEERASRASSHG 160 E GRGRGR A + RP + + S +++E RA+ G Sbjct: 250 EGGRGRGRNAKAARPAKKGKHAESKADREEARAAVRGGKG 289
>IF2_SALTI (Q8Z3H7) Translation initiation factor IF-2| Length = 892 Score = 30.0 bits (66), Expect = 2.6 Identities = 15/40 (37%), Positives = 22/40 (55%) Frame = -3 Query: 279 ERGRGRGRVAPSLRPRRGDERRASGEEQQEERASRASSHG 160 E GRGRGR A + RP + + S +++E RA+ G Sbjct: 250 EGGRGRGRNAKAARPAKKGKHAESKADREEARAAVRGGKG 289
>IF2_SALPA (Q5PLB0) Translation initiation factor IF-2| Length = 892 Score = 30.0 bits (66), Expect = 2.6 Identities = 15/40 (37%), Positives = 22/40 (55%) Frame = -3 Query: 279 ERGRGRGRVAPSLRPRRGDERRASGEEQQEERASRASSHG 160 E GRGRGR A + RP + + S +++E RA+ G Sbjct: 250 EGGRGRGRNAKAARPAKKGKHAESKADREEARAAVRGGKG 289
>DNAK3_SYNP7 (P50022) Chaperone protein dnaK3 (Heat shock protein 70-3) (Heat| shock 70 kDa protein 3) (HSP70-3) Length = 749 Score = 29.6 bits (65), Expect = 3.4 Identities = 17/40 (42%), Positives = 20/40 (50%) Frame = -3 Query: 288 PRHERGRGRGRVAPSLRPRRGDERRASGEEQQEERASRAS 169 P +R G G V P PRRG R + EE Q R R+S Sbjct: 689 PVRDRNGGNGSVRPEPAPRRG---RPTWEEDQPPRRDRSS 725
>DNAK1_SYNP6 (Q5N1V0) Chaperone protein dnaK 1 (Heat shock protein 70 1) (Heat| shock 70 kDa protein 1) (HSP70 1) Length = 749 Score = 29.6 bits (65), Expect = 3.4 Identities = 17/40 (42%), Positives = 20/40 (50%) Frame = -3 Query: 288 PRHERGRGRGRVAPSLRPRRGDERRASGEEQQEERASRAS 169 P +R G G V P PRRG R + EE Q R R+S Sbjct: 689 PVRDRNGGNGSVRPEPAPRRG---RPTWEEDQPPRRDRSS 725
>LEGA_PEA (P02857) Legumin A precursor [Contains: Legumin A alpha chain| (Legumin A acidic chain); Legumin A beta chain (Legumin A basic chain)] Length = 517 Score = 29.6 bits (65), Expect = 3.4 Identities = 13/46 (28%), Positives = 24/46 (52%) Frame = -3 Query: 303 EQDVVPRHERGRGRGRVAPSLRPRRGDERRASGEEQQEERASRASS 166 +++ PRH+RG + R+ +R GEE++E++ R S Sbjct: 276 DEEKQPRHQRGSRQEEEEDEDEERQPRHQRRRGEEEEEDKKERGGS 321
>IF2_SALCH (Q57JH9) Translation initiation factor IF-2| Length = 892 Score = 29.6 bits (65), Expect = 3.4 Identities = 14/34 (41%), Positives = 21/34 (61%) Frame = -3 Query: 279 ERGRGRGRVAPSLRPRRGDERRASGEEQQEERAS 178 E GRGRGR A + RP + + S +++E RA+ Sbjct: 250 EGGRGRGRNAKAARPAKKGKHAESKADREEARAA 283
>CAC1B_HUMAN (Q00975) Voltage-dependent N-type calcium channel alpha-1B subunit| (Voltage-gated calcium channel alpha subunit Cav2.2) (Calcium channel, L type, alpha-1 polypeptide isoform 5) (Brain calcium channel III) (BIII) Length = 2339 Score = 29.3 bits (64), Expect = 4.4 Identities = 16/45 (35%), Positives = 18/45 (40%) Frame = -3 Query: 285 RHERGRGRGRVAPSLRPRRGDERRASGEEQQEERASRASSHGASC 151 R ERGRG G RRG A+ E + RA R C Sbjct: 903 RSERGRGPGPEGGRRHHRRGSPEEAAEREPRRHRAHRHQDPSKEC 947
>RS3_CORGL (Q8NT01) 30S ribosomal protein S3| Length = 248 Score = 29.3 bits (64), Expect = 4.4 Identities = 13/25 (52%), Positives = 17/25 (68%) Frame = -3 Query: 264 RGRVAPSLRPRRGDERRASGEEQQE 190 RGR + RPRRG +RR E++QE Sbjct: 223 RGRGDRNARPRRGGQRRQRAEQKQE 247
>RS3_COREF (P59181) 30S ribosomal protein S3| Length = 248 Score = 29.3 bits (64), Expect = 4.4 Identities = 13/25 (52%), Positives = 17/25 (68%) Frame = -3 Query: 264 RGRVAPSLRPRRGDERRASGEEQQE 190 RGR + RPRRG +RR E++QE Sbjct: 223 RGRGDRNARPRRGGQRRQRAEQKQE 247
>MLL4_HUMAN (Q9UMN6) Myeloid/lymphoid or mixed-lineage leukemia protein 4| (Trithorax homolog 2) Length = 2715 Score = 29.3 bits (64), Expect = 4.4 Identities = 17/37 (45%), Positives = 21/37 (56%), Gaps = 3/37 (8%) Frame = -3 Query: 288 PRHERGRGRGRVAPSLRPRRG---DERRASGEEQQEE 187 PR +RGRGRGR P RG +E + GE +EE Sbjct: 87 PRVQRGRGRGR-GRGWGPSRGCVPEEESSDGESDEEE 122
>EBNA1_EBV (P03211) Epstein-Barr nuclear antigen 1 (EBV nuclear antigen 1)| (EBNA-1) Length = 641 Score = 28.9 bits (63), Expect = 5.8 Identities = 15/40 (37%), Positives = 21/40 (52%) Frame = -3 Query: 276 RGRGRGRVAPSLRPRRGDERRASGEEQQEERASRASSHGA 157 RGRGR R R R R GE++ +S++SS G+ Sbjct: 354 RGRGRERARGGSRERARGRGRGRGEKRPRSPSSQSSSSGS 393
>LEGA2_PEA (P15838) Legumin A2 precursor [Contains: Legumin A2 alpha chain| (Legumin A2 acidic chain); Legumin A2 beta chain (Legumin A2 basic chain)] Length = 520 Score = 28.9 bits (63), Expect = 5.8 Identities = 13/46 (28%), Positives = 24/46 (52%) Frame = -3 Query: 303 EQDVVPRHERGRGRGRVAPSLRPRRGDERRASGEEQQEERASRASS 166 +++ PRH+RG + R+ +R GEE++E++ R S Sbjct: 279 DEERQPRHQRGSRQEEEEDEDEERQPRHQRRRGEEEEEDKKERRGS 324
>PRGR_CANFA (Q9GLW0) Progesterone receptor (PR)| Length = 939 Score = 28.5 bits (62), Expect = 7.6 Identities = 20/60 (33%), Positives = 26/60 (43%), Gaps = 14/60 (23%) Frame = -3 Query: 288 PRHERG--------------RGRGRVAPSLRPRRGDERRASGEEQQEERASRASSHGASC 151 PR +RG G+GR +P+ PR R SG E E+ SS GA+C Sbjct: 115 PRQDRGPLHGAPSTALRPAGPGQGRSSPAWEPR--SPRCPSGPEPPEDPRGARSSQGAAC 172
>JHD1A_HUMAN (Q9Y2K7) JmjC domain-containing histone demethylation protein 1A| (EC 1.14.11.-) (F-box/LRR-repeat protein 11) (F-box and leucine-rich repeat protein 11) (F-box protein FBL7) (F-box protein Lilina) Length = 1162 Score = 28.5 bits (62), Expect = 7.6 Identities = 11/21 (52%), Positives = 15/21 (71%) Frame = -3 Query: 249 PSLRPRRGDERRASGEEQQEE 187 P+ P+RGDE GEE++EE Sbjct: 841 PARTPQRGDEEGLGGEEEEEE 861
>TRHY_HUMAN (Q07283) Trichohyalin| Length = 1898 Score = 28.5 bits (62), Expect = 7.6 Identities = 14/34 (41%), Positives = 20/34 (58%) Frame = -3 Query: 285 RHERGRGRGRVAPSLRPRRGDERRASGEEQQEER 184 + ERGR R P LR +R + RA +Q+E+R Sbjct: 794 KSERGRQRLSARPPLREQRERQLRAEERQQREQR 827
>RS3_CORDI (Q6NJC9) 30S ribosomal protein S3| Length = 248 Score = 28.1 bits (61), Expect = 9.9 Identities = 13/25 (52%), Positives = 17/25 (68%) Frame = -3 Query: 264 RGRVAPSLRPRRGDERRASGEEQQE 190 RGR + RPRRG +RR E++QE Sbjct: 223 RGRGDRNGRPRRGGQRRQRSEQKQE 247
>IL16_MACMU (O62675) Interleukin-16 precursor (IL-16) (Lymphocyte| chemoattractant factor) (LCF) Length = 630 Score = 28.1 bits (61), Expect = 9.9 Identities = 18/58 (31%), Positives = 29/58 (50%) Frame = -3 Query: 252 APSLRPRRGDERRASGEEQQEERASRASSHGASCV*LCVSSRLTDRPSNGSPGADLGQ 79 AP+ R G RAS ++R S + G+S + + RL+ +PS+G LG+ Sbjct: 118 APASREHLGPHIRASSSSSIKQRISSFETFGSSQLPDKGAQRLSLQPSSGEAAKPLGK 175
>IL16_MACFA (O62676) Interleukin-16 precursor (IL-16) (Lymphocyte| chemoattractant factor) (LCF) Length = 630 Score = 28.1 bits (61), Expect = 9.9 Identities = 18/58 (31%), Positives = 29/58 (50%) Frame = -3 Query: 252 APSLRPRRGDERRASGEEQQEERASRASSHGASCV*LCVSSRLTDRPSNGSPGADLGQ 79 AP+ R G RAS ++R S + G+S + + RL+ +PS+G LG+ Sbjct: 118 APASREHLGPHIRASSSSSIKQRISSFETFGSSQLPDKGAQRLSLQPSSGEAAKPLGK 175
>RLUB_PSEAE (Q9HZ55) Ribosomal large subunit pseudouridine synthase B (EC| 5.4.99.-) (rRNA-uridine isomerase B) (rRNA pseudouridylate synthase B) Length = 386 Score = 28.1 bits (61), Expect = 9.9 Identities = 17/40 (42%), Positives = 19/40 (47%), Gaps = 2/40 (5%) Frame = -3 Query: 288 PRHERGRGRGRVAPSLRPRRGDERRA--SGEEQQEERASR 175 PR E G R AP+ RP RG + A G EQ A R Sbjct: 297 PRREDGENAARRAPASRPARGPQPSAERKGREQGTPVAER 336 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 28,282,348 Number of Sequences: 219361 Number of extensions: 410635 Number of successful extensions: 1942 Number of sequences better than 10.0: 29 Number of HSP's better than 10.0 without gapping: 1843 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1934 length of database: 80,573,946 effective HSP length: 101 effective length of database: 58,418,485 effective search space used: 2570413340 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
