ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl08g01
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ZN219_HUMAN (Q9P2Y4) Zinc finger protein 219 32 0.50
2GLT5_WHEAT (P10388) Glutenin, high molecular weight subunit DX5 ... 28 4.3
3GLT0_WHEAT (P10387) Glutenin, high molecular weight subunit DY10... 28 4.3
4GLT4_WHEAT (P08489) Glutenin, high molecular weight subunit PW21... 28 4.3
5GLT3_WHEAT (P08488) Glutenin, high molecular weight subunit 12 p... 28 5.6
6PME_BRACM (Q42608) Pectinesterase (EC 3.1.1.11) (Pectin methyles... 28 7.3
7PME_BRANA (P41510) Probable pectinesterase precursor (EC 3.1.1.1... 28 7.3
8GCP60_HUMAN (Q9H3P7) Golgi resident protein GCP60 (Acyl-CoA-bind... 28 7.3
9RAA3_CHLRE (Q9FEC4) Trans-splicing factor Raa3, chloroplast prec... 27 9.5

>ZN219_HUMAN (Q9P2Y4) Zinc finger protein 219|
          Length = 722

 Score = 31.6 bits (70), Expect = 0.50
 Identities = 14/31 (45%), Positives = 17/31 (54%)
 Frame = -3

Query: 176 PRPPCAGRQTGQEQQPADPGVGEENGGGERA 84
           PRPP +G   G  ++PA PG    NG G  A
Sbjct: 594 PRPPSSGAGPGSRRKPASPGRTLRNGRGGEA 624



to top

>GLT5_WHEAT (P10388) Glutenin, high molecular weight subunit DX5 precursor|
          Length = 839

 Score = 28.5 bits (62), Expect = 4.3
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = -3

Query: 167 PCAGRQTGQEQQPADPGVGEENGGGER 87
           P  G+Q GQ QQ   PG G++ G G++
Sbjct: 237 PGQGQQPGQGQQGQQPGQGQQPGQGQQ 263



 Score = 28.5 bits (62), Expect = 4.3
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = -3

Query: 185 LRWPRPPCAGRQTGQEQQPADPGVGEENGGGER 87
           L+ P     G+Q GQ QQ   PG G++ G G++
Sbjct: 216 LQQPAQGQQGQQPGQAQQGQQPGQGQQPGQGQQ 248



 Score = 28.1 bits (61), Expect = 5.6
 Identities = 13/38 (34%), Positives = 21/38 (55%)
 Frame = -3

Query: 203 AERRTPLRWPRPPCAGRQTGQEQQPADPGVGEENGGGE 90
           +++ T  + P     G+Q GQ QQ   PG G++ G G+
Sbjct: 381 SQQPTQSQQPGQGQQGQQVGQGQQAQQPGQGQQPGQGQ 418



to top

>GLT0_WHEAT (P10387) Glutenin, high molecular weight subunit DY10 precursor|
          Length = 648

 Score = 28.5 bits (62), Expect = 4.3
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = -3

Query: 158 GRQTGQEQQPADPGVGEENGGGER 87
           G+QTGQ  Q   PG G++ G G++
Sbjct: 380 GQQTGQPGQKQQPGQGQQTGQGQQ 403



 Score = 28.1 bits (61), Expect = 5.6
 Identities = 14/36 (38%), Positives = 20/36 (55%), Gaps = 6/36 (16%)
 Frame = -3

Query: 176 PRPPCAGRQTGQEQQ------PADPGVGEENGGGER 87
           P+ P  G+Q GQ QQ      P  PG G++ G G++
Sbjct: 496 PQQPGQGQQLGQGQQGYYPTSPQQPGQGQQPGQGQQ 531



to top

>GLT4_WHEAT (P08489) Glutenin, high molecular weight subunit PW212 precursor|
          Length = 838

 Score = 28.5 bits (62), Expect = 4.3
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = -3

Query: 167 PCAGRQTGQEQQPADPGVGEENGGGER 87
           P  G+Q GQ QQ   PG G++ G G++
Sbjct: 242 PGQGQQPGQGQQGQQPGQGQQPGQGQQ 268



 Score = 28.1 bits (61), Expect = 5.6
 Identities = 13/38 (34%), Positives = 21/38 (55%)
 Frame = -3

Query: 203 AERRTPLRWPRPPCAGRQTGQEQQPADPGVGEENGGGE 90
           +++ T  + P     G+Q GQ QQ   PG G++ G G+
Sbjct: 386 SQQPTQSQQPGQGQQGQQVGQGQQAQQPGQGQQPGQGQ 423



 Score = 28.1 bits (61), Expect = 5.6
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = -3

Query: 185 LRWPRPPCAGRQTGQEQQPADPGVGEENGGGER 87
           L+ P     G+Q GQ QQ   PG G++ G G++
Sbjct: 221 LQQPAQGQQGQQPGQGQQGQQPGQGQQPGQGQQ 253



to top

>GLT3_WHEAT (P08488) Glutenin, high molecular weight subunit 12 precursor|
          Length = 660

 Score = 28.1 bits (61), Expect = 5.6
 Identities = 14/36 (38%), Positives = 20/36 (55%), Gaps = 6/36 (16%)
 Frame = -3

Query: 176 PRPPCAGRQTGQEQQ------PADPGVGEENGGGER 87
           P+ P  G+Q GQ QQ      P  PG G++ G G++
Sbjct: 508 PQQPGQGQQLGQGQQGYYPTSPQQPGQGQQPGQGQQ 543



to top

>PME_BRACM (Q42608) Pectinesterase (EC 3.1.1.11) (Pectin methylesterase) (PE)|
           (Fragment)
          Length = 571

 Score = 27.7 bits (60), Expect = 7.3
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = -3

Query: 152 QTGQEQQPADPGVGEENGGG 93
           Q G+   PAD G+GE  GGG
Sbjct: 234 QAGRPGAPADEGIGEGGGGG 253



to top

>PME_BRANA (P41510) Probable pectinesterase precursor (EC 3.1.1.11) (Pectin|
           methylesterase) (PE)
          Length = 584

 Score = 27.7 bits (60), Expect = 7.3
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = -3

Query: 152 QTGQEQQPADPGVGEENGGG 93
           Q G+   PAD G+GE  GGG
Sbjct: 247 QAGRPGAPADEGIGEGGGGG 266



to top

>GCP60_HUMAN (Q9H3P7) Golgi resident protein GCP60 (Acyl-CoA-binding|
           domain-containing protein 3) (Golgi phosphoprotein 1)
           (GOLPH1) (Golgi complex-associated protein 1) (GOCAP1)
           (PBR- and PKA-associated protein 7) (Peripherial
           benzodiazepine receptor-asso
          Length = 527

 Score = 27.7 bits (60), Expect = 7.3
 Identities = 13/35 (37%), Positives = 16/35 (45%)
 Frame = -3

Query: 188 PLRWPRPPCAGRQTGQEQQPADPGVGEENGGGERA 84
           PL  P PP +GR  G   +  +PG     G  E A
Sbjct: 37  PLPPPSPPGSGRGPGASGEQPEPGEAAAGGAAEEA 71



to top

>RAA3_CHLRE (Q9FEC4) Trans-splicing factor Raa3, chloroplast precursor|
          Length = 1783

 Score = 27.3 bits (59), Expect = 9.5
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = -3

Query: 173 RPPCAGRQTGQEQQPADPGVGEENGGG 93
           R P AG+     + PA PGVG ++ GG
Sbjct: 220 REPQAGKPRASGRAPAAPGVGPQDVGG 246


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 20,226,589
Number of Sequences: 219361
Number of extensions: 218458
Number of successful extensions: 975
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 910
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 974
length of database: 80,573,946
effective HSP length: 93
effective length of database: 60,173,373
effective search space used: 1444160952
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
to top