ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl08f11 |
|---|---|
| Clone Library Name | barley_pub |
>SSM4_YEAST (P40318) Protein SSM4| Length = 1319 Score = 79.3 bits (194), Expect = 3e-15 Identities = 31/82 (37%), Positives = 49/82 (59%), Gaps = 8/82 (9%) Frame = +3 Query: 171 GDVCRICRNRGDDEHPLRYPCACSGSIKFVHQDCLLQWLDHSN--------SRQCEVCKH 326 G CRICR +++PL +PC C GSIK++H+ CLL+W+ N +C++C + Sbjct: 36 GATCRICRGEATEDNPLFHPCKCRGSIKYMHESCLLEWVASKNIDISKPGADVKCDICHY 95 Query: 327 AFSFSPVYAQNAPSRLPFQELV 392 F +YA+N P ++PF L+ Sbjct: 96 PIQFKTIYAENMPEKIPFSLLL 117
>STATB_CAEEL (Q20977) Signal transducer and activator of transcription b (Zinc| finger protein STAT-B) Length = 966 Score = 53.9 bits (128), Expect = 1e-07 Identities = 23/68 (33%), Positives = 40/68 (58%), Gaps = 5/68 (7%) Frame = +3 Query: 177 VCRICRNRGDDEHPLRYPCACSGSIKFVHQDCLLQWLDHSNSRQCEVCKHAFS-----FS 341 +CRIC+ D + PC C+G++ VH++CL +W++ SN + CE+CK ++ F Sbjct: 51 ICRICQMHEGD---MVRPCDCAGTMGDVHEECLTKWVNMSNKKTCEICKSEYTNSGAQFK 107 Query: 342 PVYAQNAP 365 P+ + P Sbjct: 108 PIKQWSKP 115
>MARH3_RAT (Q5XIE5) Membrane-associated RING finger protein 3| (Membrane-associated RING-CH protein III) (MARCH-III) Length = 253 Score = 53.5 bits (127), Expect = 2e-07 Identities = 21/53 (39%), Positives = 32/53 (60%) Frame = +3 Query: 177 VCRICRNRGDDEHPLRYPCACSGSIKFVHQDCLLQWLDHSNSRQCEVCKHAFS 335 +CRIC + G + L PC C+G++ +H+ CL WL SN+ CE+C F+ Sbjct: 70 MCRIC-HEGSSQEDLLSPCECTGTLGTIHRSCLEHWLSSSNTSYCELCHFRFA 121
>MARH3_HUMAN (Q86UD3) Membrane-associated RING finger protein 3| (Membrane-associated RING-CH protein III) (MARCH-III) (RING finger protein 173) Length = 253 Score = 53.5 bits (127), Expect = 2e-07 Identities = 21/53 (39%), Positives = 32/53 (60%) Frame = +3 Query: 177 VCRICRNRGDDEHPLRYPCACSGSIKFVHQDCLLQWLDHSNSRQCEVCKHAFS 335 +CRIC + G + L PC C+G++ +H+ CL WL SN+ CE+C F+ Sbjct: 70 MCRIC-HEGSSQEDLLSPCECTGTLGTIHRSCLEHWLSSSNTSYCELCHFRFA 121
>MARH3_MOUSE (Q8BRX9) Membrane-associated RING finger protein 3| (Membrane-associated RING-CH protein III) (MARCH-III) Length = 218 Score = 53.5 bits (127), Expect = 2e-07 Identities = 21/53 (39%), Positives = 32/53 (60%) Frame = +3 Query: 177 VCRICRNRGDDEHPLRYPCACSGSIKFVHQDCLLQWLDHSNSRQCEVCKHAFS 335 +CRIC + G + L PC C+G++ +H+ CL WL SN+ CE+C F+ Sbjct: 70 MCRIC-HEGSSQEDLLSPCECTGTLGTIHRSCLEHWLSSSNTSYCELCHFRFA 121
>MARH2_HUMAN (Q9P0N8) Membrane-associated RING finger protein 2| (Membrane-associated RING-CH protein II) (MARCH-II) (RING finger protein 172) Length = 246 Score = 52.8 bits (125), Expect = 3e-07 Identities = 23/55 (41%), Positives = 33/55 (60%) Frame = +3 Query: 171 GDVCRICRNRGDDEHPLRYPCACSGSIKFVHQDCLLQWLDHSNSRQCEVCKHAFS 335 G CRIC + G + L PC C+G++ VH+ CL +WL SN+ CE+C F+ Sbjct: 61 GPFCRIC-HEGANGECLLSPCGCTGTLGAVHKSCLEKWLSSSNTSYCELCHTEFA 114
>MARH4_HUMAN (Q9P2E8) Membrane-associated RING finger protein 4| (Membrane-associated RING-CH protein IV) (MARCH-IV) (RING finger protein 174) Length = 410 Score = 52.8 bits (125), Expect = 3e-07 Identities = 21/61 (34%), Positives = 34/61 (55%) Frame = +3 Query: 177 VCRICRNRGDDEHPLRYPCACSGSIKFVHQDCLLQWLDHSNSRQCEVCKHAFSFSPVYAQ 356 +CRIC +G ++ L PC C GS+K HQ CL++W+ CE+C + + + + Sbjct: 162 LCRICF-QGPEQGELLSPCRCDGSVKCTHQPCLIKWISERGCWSCELCYYKYHVIAISTK 220 Query: 357 N 359 N Sbjct: 221 N 221
>MARH4_MOUSE (Q80TE3) Membrane-associated RING finger protein 4| (Membrane-associated RING-CH protein IV) (MARCH-IV) Length = 408 Score = 52.8 bits (125), Expect = 3e-07 Identities = 21/61 (34%), Positives = 34/61 (55%) Frame = +3 Query: 177 VCRICRNRGDDEHPLRYPCACSGSIKFVHQDCLLQWLDHSNSRQCEVCKHAFSFSPVYAQ 356 +CRIC +G ++ L PC C GS+K HQ CL++W+ CE+C + + + + Sbjct: 161 LCRICF-QGPEQGELLSPCRCDGSVKCTHQPCLIKWISERGCWSCELCYYKYHVIAISTK 219 Query: 357 N 359 N Sbjct: 220 N 220
>MARH2_MOUSE (Q99M02) Membrane-associated RING finger protein 2| (Membrane-associated RING-CH protein II) (MARCH-II) Length = 246 Score = 52.4 bits (124), Expect = 4e-07 Identities = 22/52 (42%), Positives = 32/52 (61%) Frame = +3 Query: 180 CRICRNRGDDEHPLRYPCACSGSIKFVHQDCLLQWLDHSNSRQCEVCKHAFS 335 CRIC + E+ L PC C+G++ VH+ CL +WL SN+ CE+C F+ Sbjct: 64 CRICHEGANGENLLS-PCGCTGTLGAVHKSCLEKWLSSSNTSYCELCHTEFA 114
>VC07_SWPVK (P32225) Hypothetical protein C7| Length = 155 Score = 48.1 bits (113), Expect = 8e-06 Identities = 23/75 (30%), Positives = 37/75 (49%) Frame = +3 Query: 177 VCRICRNRGDDEHPLRYPCACSGSIKFVHQDCLLQWLDHSNSRQCEVCKHAFSFSPVYAQ 356 VC IC+ DD + C C K VH +C+ +W+ +S R C++C ++ V Sbjct: 4 VCWICK---DDYSIEKNYCNCKNEYKVVHDECMKKWIQYSRERSCKLCNKEYNIISV--- 57 Query: 357 NAPSRLPFQELVFAV 401 R PF + VF++ Sbjct: 58 ----RKPFSQWVFSI 68
>MIR2_HHV8 (P90489) Modulator of immune recognition 2 (EC 6.3.2.-) (MIR2)| (IE1A protein) (ORF K5) Length = 256 Score = 47.8 bits (112), Expect = 1e-05 Identities = 20/51 (39%), Positives = 29/51 (56%) Frame = +3 Query: 171 GDVCRICRNRGDDEHPLRYPCACSGSIKFVHQDCLLQWLDHSNSRQCEVCK 323 G +C ICR +E +PCAC+G + VH CL WL S + C++C+ Sbjct: 12 GPICWICREEVGNEGI--HPCACTGELDVVHPQCLSTWLTVSRNTACQMCR 60
>MIR1_MHV68 (O41933) Modulator of immune recognition 1 homolog (EC 6.3.2.-)| (MK3) (ORF K3) Length = 201 Score = 47.0 bits (110), Expect = 2e-05 Identities = 22/55 (40%), Positives = 28/55 (50%) Frame = +3 Query: 171 GDVCRICRNRGDDEHPLRYPCACSGSIKFVHQDCLLQWLDHSNSRQCEVCKHAFS 335 G+ C IC E PL+ C C GS HQDCL WL+ S + C +C +S Sbjct: 5 GEFCWICHQ---PEGPLKRFCGCKGSCAVSHQDCLRGWLETSRRQTCALCGTPYS 56
>VIE1_BHV4D (P27426) 32.7 kDa immediate early protein IE1| Length = 285 Score = 43.5 bits (101), Expect = 2e-04 Identities = 18/51 (35%), Positives = 30/51 (58%) Frame = +3 Query: 171 GDVCRICRNRGDDEHPLRYPCACSGSIKFVHQDCLLQWLDHSNSRQCEVCK 323 G C ICR+ G+ RY C C G +++ H++CL W+ S ++C+ C+ Sbjct: 129 GKQCWICRD-GESLPEARY-CNCYGDLQYCHEECLKTWISMSGEKKCKFCQ 177
>MIR1_HHV8 (P90495) Modulator of immune recognition 1 (EC 6.3.2.-) (MIR1)| (IE1B protein) (ORF K3) Length = 333 Score = 41.2 bits (95), Expect = 0.001 Identities = 22/74 (29%), Positives = 35/74 (47%), Gaps = 4/74 (5%) Frame = +3 Query: 177 VCRICRNRGDDEHPLRYPCACSGSIKFVHQDCLLQWLDHSNSRQCEVCKHAFS----FSP 344 VC IC +E C C+G ++ VH+ CL WL S + C++C ++ + P Sbjct: 8 VCWICNEELGNER--FRACGCTGELENVHRSCLSTWLTISRNTACQICGVVYNTRVVWRP 65 Query: 345 VYAQNAPSRLPFQE 386 + RL +QE Sbjct: 66 LREMTLLPRLTYQE 79
>ATL4D_ARATH (Q9M0R4) Putative RING-H2 finger protein ATL4D precursor| Length = 357 Score = 35.8 bits (81), Expect = 0.042 Identities = 19/51 (37%), Positives = 27/51 (52%) Frame = +3 Query: 171 GDVCRICRNRGDDEHPLRYPCACSGSIKFVHQDCLLQWLDHSNSRQCEVCK 323 G C IC +DE PLR+ CS + H +C+ +WL S+ C VC+ Sbjct: 117 GVECAICLCEFEDEEPLRWMPPCSHTF---HANCIDEWL--SSRSTCPVCR 162
>ATL1H_ARATH (Q9C7I1) Putative RING-H2 finger protein ATL1H precursor| Length = 327 Score = 35.4 bits (80), Expect = 0.055 Identities = 22/64 (34%), Positives = 29/64 (45%) Frame = +3 Query: 171 GDVCRICRNRGDDEHPLRYPCACSGSIKFVHQDCLLQWLDHSNSRQCEVCKHAFSFSPVY 350 G C IC N +DE LR CS + H C+ WL S+ C VC+ + P Sbjct: 125 GVECAICLNEFEDEETLRLMPPCSHAF---HASCIDVWL--SSRSTCPVCRASLPPKPGS 179 Query: 351 AQNA 362 QN+ Sbjct: 180 DQNS 183
>RHA1A_ARATH (Q9SUS4) RING-H2 zinc finger protein RHA1a| Length = 159 Score = 35.0 bits (79), Expect = 0.072 Identities = 17/62 (27%), Positives = 27/62 (43%) Frame = +3 Query: 174 DVCRICRNRGDDEHPLRYPCACSGSIKFVHQDCLLQWLDHSNSRQCEVCKHAFSFSPVYA 353 D C +C + + + +R C H CL +W+ N +C VC+H F Y Sbjct: 84 DCCTVCLSDFESDDKVRQLPKCG---HVFHHYCLDRWIVDYNKMKCPVCRHRFLPKEKYT 140 Query: 354 QN 359 Q+ Sbjct: 141 QS 142
>ATL4A_ARATH (Q9M0R7) Putative RING-H2 finger protein ATL4A| Length = 132 Score = 33.9 bits (76), Expect = 0.16 Identities = 16/48 (33%), Positives = 24/48 (50%) Frame = +3 Query: 180 CRICRNRGDDEHPLRYPCACSGSIKFVHQDCLLQWLDHSNSRQCEVCK 323 C +C N D+ LR C + H DC+ WL HS++ C +C+ Sbjct: 85 CVVCLNEFKDDETLRLVPPC---VHVFHADCVDIWLSHSST--CPICR 127
>ATL4C_ARATH (Q9M0R5) Putative RING-H2 finger protein ATL4C precursor| Length = 345 Score = 33.5 bits (75), Expect = 0.21 Identities = 19/58 (32%), Positives = 28/58 (48%) Frame = +3 Query: 171 GDVCRICRNRGDDEHPLRYPCACSGSIKFVHQDCLLQWLDHSNSRQCEVCKHAFSFSP 344 G C IC + +D+ LR+ CS + H +C+ WL S+ C VC+ S P Sbjct: 120 GVECAICLSEFEDQETLRWMPPCSHTF---HANCIDVWL--SSWSTCPVCRANLSLKP 172
>ATL5L_ARATH (Q9FIR0) Putative RING-H2 finger protein ATL5L| Length = 289 Score = 32.3 bits (72), Expect = 0.47 Identities = 24/81 (29%), Positives = 37/81 (45%), Gaps = 1/81 (1%) Frame = +3 Query: 180 CRICRNRGDDEHPL-RYPCACSGSIKFVHQDCLLQWLDHSNSRQCEVCKHAFSFSPVYAQ 356 C IC ++EH L R C HQ+C+ QWL+ +++ C VC+ Sbjct: 114 CAICLLEFEEEHILLRLLTTC---YHVFHQECIDQWLE--SNKTCPVCRRNLD------P 162 Query: 357 NAPSRLPFQELVFAVGMKACH 419 NAP + +EL+ V + H Sbjct: 163 NAPENI--KELIIEVIQENAH 181
>ZN294_MOUSE (Q6A009) Zinc finger protein 294 (Zfp-294)| Length = 1767 Score = 31.2 bits (69), Expect = 1.0 Identities = 12/33 (36%), Positives = 15/33 (45%) Frame = +3 Query: 234 ACSGSIKFVHQDCLLQWLDHSNSRQCEVCKHAF 332 AC K H CL +W SN C +C+ F Sbjct: 1734 ACRTCKKKFHSACLYKWFTSSNKSTCPLCRETF 1766
>ZN294_HUMAN (O94822) Zinc finger protein 294| Length = 1766 Score = 31.2 bits (69), Expect = 1.0 Identities = 12/33 (36%), Positives = 15/33 (45%) Frame = +3 Query: 234 ACSGSIKFVHQDCLLQWLDHSNSRQCEVCKHAF 332 AC K H CL +W SN C +C+ F Sbjct: 1733 ACRTCKKKFHSACLYKWFTSSNKSTCPLCRETF 1765
>ZN337_HUMAN (Q9Y3M9) Zinc finger protein 337| Length = 751 Score = 30.0 bits (66), Expect = 2.3 Identities = 17/43 (39%), Positives = 21/43 (48%), Gaps = 3/43 (6%) Frame = -3 Query: 385 SWKGSLLGAF*A*TGEKE---NACLQTSHWRELLWSSHWRRQS 266 +WKG+LL +GEK N C Q W+ L HWR S Sbjct: 638 NWKGNLLTHQRTHSGEKPFVCNVCGQGFSWKRSLTRHHWRIHS 680
>ATL5F_ARATH (Q9LX93) RING-H2 finger protein ATL5F| Length = 301 Score = 29.3 bits (64), Expect = 3.9 Identities = 16/52 (30%), Positives = 25/52 (48%), Gaps = 1/52 (1%) Frame = +3 Query: 171 GDVCRICRNRGDDEHPLRYPCACSGSIKFVHQDCLLQW-LDHSNSRQCEVCK 323 G C +C N +++ LR CS + H +C+ W L H N C +C+ Sbjct: 132 GTECSVCLNEFEEDESLRLLPKCSHAF---HLNCIDTWLLSHKN---CPLCR 177
>UL49_HHV6U (P52441) Protein U33| Length = 470 Score = 28.9 bits (63), Expect = 5.2 Identities = 13/40 (32%), Positives = 20/40 (50%), Gaps = 5/40 (12%) Frame = +3 Query: 228 PCACSGSIKFVHQ-----DCLLQWLDHSNSRQCEVCKHAF 332 PC+C VH LL+ + H + QC+ C+H+F Sbjct: 405 PCSCRSCYSTVHLYNVTVKKLLRLVSHGSDFQCQRCQHSF 444
>ASR1_YEAST (Q06834) Alcohol-sensitive RING finger protein 1| Length = 288 Score = 28.5 bits (62), Expect = 6.7 Identities = 14/48 (29%), Positives = 25/48 (52%) Frame = +3 Query: 180 CRICRNRGDDEHPLRYPCACSGSIKFVHQDCLLQWLDHSNSRQCEVCK 323 C IC DD+ ++ C KF H +C+ +W +S + +C +C+ Sbjct: 4 CPICL--ADDQEGEQFGCLNVCGHKF-HLNCIREWHKYSINLKCPICR 48
>REC10_SCHPO (Q09823) Meiotic recombination protein rec10| Length = 791 Score = 28.1 bits (61), Expect = 8.8 Identities = 10/22 (45%), Positives = 16/22 (72%) Frame = -3 Query: 331 NACLQTSHWRELLWSSHWRRQS 266 N L++S W+ELL HW+++S Sbjct: 595 NNSLKSSVWKELLKEKHWKQES 616
>ZN192_HUMAN (Q15776) Zinc finger protein 192 (LD5-1)| Length = 578 Score = 28.1 bits (61), Expect = 8.8 Identities = 16/54 (29%), Positives = 23/54 (42%), Gaps = 2/54 (3%) Frame = +3 Query: 183 RICRNRGDDEHPLRYPCACSGSIKFVHQDCLLQWLDHSNSR--QCEVCKHAFSF 338 R+ R RG+ R+ C G + W H+ + QC VC AFS+ Sbjct: 308 RLERQRGNPTQERRHKCDECGKSFAQSSGLVRHWRIHTGEKPYQCNVCGKAFSY 361
>TRAIP_MOUSE (Q8VIG6) TRAF-interacting protein| Length = 470 Score = 28.1 bits (61), Expect = 8.8 Identities = 9/21 (42%), Positives = 13/21 (61%) Frame = +3 Query: 261 HQDCLLQWLDHSNSRQCEVCK 323 H CL+QW + + SR C C+ Sbjct: 30 HLQCLIQWFETAPSRTCPQCR 50
>RHA1B_ARATH (Q9SUS5) RING-H2 zinc finger protein RHA1b| Length = 157 Score = 28.1 bits (61), Expect = 8.8 Identities = 13/53 (24%), Positives = 22/53 (41%) Frame = +3 Query: 174 DVCRICRNRGDDEHPLRYPCACSGSIKFVHQDCLLQWLDHSNSRQCEVCKHAF 332 D C +C + + +R C H CL +W+ N C +C++ F Sbjct: 83 DCCTVCLSDFVSDDKIRQLPKCG---HVFHHRCLDRWIVDCNKITCPICRNRF 132
>LAMB2_HUMAN (P55268) Laminin beta-2 chain precursor (S-laminin) (Laminin B1s| chain) Length = 1798 Score = 28.1 bits (61), Expect = 8.8 Identities = 18/57 (31%), Positives = 21/57 (36%), Gaps = 2/57 (3%) Frame = +3 Query: 180 CRICRNRGDDEHPLRYPCACSGSIKF--VHQDCLLQWLDHSNSRQCEVCKHAFSFSP 344 C C+ RG P PC C+G H L DH+ CE C F P Sbjct: 861 CDRCQ-RGQWGFPSCRPCVCNGHADECNTHTGACLGCRDHTGGEHCERCIAGFHRDP 916
>YQDA_CAEEL (Q09268) Hypothetical RING finger protein C32D5.10 in chromosome II| Length = 610 Score = 28.1 bits (61), Expect = 8.8 Identities = 16/53 (30%), Positives = 24/53 (45%) Frame = +3 Query: 180 CRICRNRGDDEHPLRYPCACSGSIKFVHQDCLLQWLDHSNSRQCEVCKHAFSF 338 C +C+N D L C +F + DC++ WL + C +CK SF Sbjct: 41 CSVCKNEIIDTTSLSDCCH-----EFCY-DCIVGWLTKGSGPFCPMCKTPVSF 87
>TRAIP_HUMAN (Q9BWF2) TRAF-interacting protein| Length = 469 Score = 28.1 bits (61), Expect = 8.8 Identities = 9/21 (42%), Positives = 13/21 (61%) Frame = +3 Query: 261 HQDCLLQWLDHSNSRQCEVCK 323 H CL+QW + + SR C C+ Sbjct: 30 HLQCLIQWFETAPSRTCPQCR 50 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 27,643,238 Number of Sequences: 219361 Number of extensions: 450648 Number of successful extensions: 1496 Number of sequences better than 10.0: 33 Number of HSP's better than 10.0 without gapping: 1463 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1493 length of database: 80,573,946 effective HSP length: 100 effective length of database: 58,637,846 effective search space used: 2286875994 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
