ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl08f10 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AK065502.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013027C12, full insert sequence Length = 3937 Score = 622 bits (314), Expect = e-175 Identities = 430/469 (91%) Strand = Plus / Plus Query: 1 aaaaatggttcttttcagcatgatatccattattggcttggtaaagataccagtcaggat 60 |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct: 686 aaaaatggttcttttcggcatgatatccattattggcttggtaaagataccagtcaggat 745 Query: 61 gaatctggtacagctgcaatcaagactgtggaattggatgttgctcttggcggacgtggt 120 ||| |||||||||||||||||||||||||||||||||||| ||||||||| ||||||| | Sbjct: 746 gaagctggtacagctgcaatcaagactgtggaattggatgctgctcttggtggacgtgct 805 Query: 121 gttcaataccgtgaagtacagggaaatgagactgagaaatttctttcctactttaaaccc 180 ||||||||||||||||||||||| |||||||| |||| ||||||||| || |||||||| Sbjct: 806 gttcaataccgtgaagtacaggggaatgagacagagagatttctttcatattttaaacct 865 Query: 181 tgtattattccagaggaaggtggagttgcatctggtttcaggcatgctgaaatcaatgag 240 |||||||| ||||||||||||||| |||||||||||||||||||| ||||||||||||| Sbjct: 866 tgtattataccagaggaaggtggaattgcatctggtttcaggcatactgaaatcaatgaa 925 Query: 241 agggagcatgtaacacgattatttgtttgcagaggaaagcatacagtccatgttaaagag 300 |||||||||| ||| | |||||||| |||||||||||||||||||||||||| |||||| Sbjct: 926 cgggagcatgtgacaaggttatttgtctgcagaggaaagcatacagtccatgtcaaagag 985 Query: 301 gtgccttttgcaagatcatcactcaaccatgatgacatatttattttagacacgaagtcc 360 || || |||||||||||||| || ||||||||||| |||||||||||||| || |||||| Sbjct: 986 gttccgtttgcaagatcatcgctgaaccatgatgatatatttattttagatacaaagtcc 1045 Query: 361 aagatattccaattcaatggatcgaattctagtattcaggagagggctaaagcccttgag 420 || |||||||| ||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct: 1046 aaaatattccagttcaatggatcgaattcaagtattcaggagagggctaaagcccttgag 1105 Query: 421 gttgtgcaatatctcanagacactaaccatgaaggaaaatgtgatgtag 469 |||||||||||| | | ||||| |||||||| || |||||||| |||| Sbjct: 1106 gttgtgcaatatttgaaagacagcaaccatgagggcaaatgtgacgtag 1154
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 335 bits (169), Expect = 8e-89 Identities = 229/249 (91%) Strand = Plus / Minus Query: 55 caggatgaatctggtacagctgcaatcaagactgtggaattggatgttgctcttggcgga 114 ||||||||| |||||||||||||||||||||||||||||||||||| ||||||||| ||| Sbjct: 26758575 caggatgaagctggtacagctgcaatcaagactgtggaattggatgctgctcttggtgga 26758516 Query: 115 cgtggtgttcaataccgtgaagtacagggaaatgagactgagaaatttctttcctacttt 174 |||| |||||||||||||||||||||||| |||||||| |||| ||||||||| || ||| Sbjct: 26758515 cgtgctgttcaataccgtgaagtacaggggaatgagacagagagatttctttcatatttt 26758456 Query: 175 aaaccctgtattattccagaggaaggtggagttgcatctggtttcaggcatgctgaaatc 234 ||||| |||||||| ||||||||||||||| |||||||||||||||||||| |||||||| Sbjct: 26758455 aaaccttgtattataccagaggaaggtggaattgcatctggtttcaggcatactgaaatc 26758396 Query: 235 aatgagagggagcatgtaacacgattatttgtttgcagaggaaagcatacagtccatgtt 294 ||||| |||||||||| ||| | |||||||| |||||||||||||||||||||||||| Sbjct: 26758395 aatgaacgggagcatgtgacaaggttatttgtctgcagaggaaagcatacagtccatgtc 26758336 Query: 295 aaagaggtg 303 ||||||||| Sbjct: 26758335 aaagaggtg 26758327 Score = 198 bits (100), Expect = 1e-47 Identities = 147/163 (90%) Strand = Plus / Minus Query: 307 tttgcaagatcatcactcaaccatgatgacatatttattttagacacgaagtccaagata 366 |||||||||||||| || ||||||||||| |||||||||||||| || |||||||| ||| Sbjct: 26758220 tttgcaagatcatcgctgaaccatgatgatatatttattttagatacaaagtccaaaata 26758161 Query: 367 ttccaattcaatggatcgaattctagtattcaggagagggctaaagcccttgaggttgtg 426 ||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct: 26758160 ttccagttcaatggatcgaattcaagtattcaggagagggctaaagcccttgaggttgtg 26758101 Query: 427 caatatctcanagacactaaccatgaaggaaaatgtgatgtag 469 |||||| | | ||||| |||||||| || |||||||| |||| Sbjct: 26758100 caatatttgaaagacagcaaccatgagggcaaatgtgacgtag 26758058 Score = 107 bits (54), Expect = 3e-20 Identities = 57/58 (98%) Strand = Plus / Minus Query: 1 aaaaatggttcttttcagcatgatatccattattggcttggtaaagataccagtcagg 58 |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct: 26758720 aaaaatggttcttttcggcatgatatccattattggcttggtaaagataccagtcagg 26758663
>dbj|AP005769.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:OSJNBa0051O02 Length = 169532 Score = 335 bits (169), Expect = 8e-89 Identities = 229/249 (91%) Strand = Plus / Minus Query: 55 caggatgaatctggtacagctgcaatcaagactgtggaattggatgttgctcttggcgga 114 ||||||||| |||||||||||||||||||||||||||||||||||| ||||||||| ||| Sbjct: 13201 caggatgaagctggtacagctgcaatcaagactgtggaattggatgctgctcttggtgga 13142 Query: 115 cgtggtgttcaataccgtgaagtacagggaaatgagactgagaaatttctttcctacttt 174 |||| |||||||||||||||||||||||| |||||||| |||| ||||||||| || ||| Sbjct: 13141 cgtgctgttcaataccgtgaagtacaggggaatgagacagagagatttctttcatatttt 13082 Query: 175 aaaccctgtattattccagaggaaggtggagttgcatctggtttcaggcatgctgaaatc 234 ||||| |||||||| ||||||||||||||| |||||||||||||||||||| |||||||| Sbjct: 13081 aaaccttgtattataccagaggaaggtggaattgcatctggtttcaggcatactgaaatc 13022 Query: 235 aatgagagggagcatgtaacacgattatttgtttgcagaggaaagcatacagtccatgtt 294 ||||| |||||||||| ||| | |||||||| |||||||||||||||||||||||||| Sbjct: 13021 aatgaacgggagcatgtgacaaggttatttgtctgcagaggaaagcatacagtccatgtc 12962 Query: 295 aaagaggtg 303 ||||||||| Sbjct: 12961 aaagaggtg 12953 Score = 198 bits (100), Expect = 1e-47 Identities = 147/163 (90%) Strand = Plus / Minus Query: 307 tttgcaagatcatcactcaaccatgatgacatatttattttagacacgaagtccaagata 366 |||||||||||||| || ||||||||||| |||||||||||||| || |||||||| ||| Sbjct: 12846 tttgcaagatcatcgctgaaccatgatgatatatttattttagatacaaagtccaaaata 12787 Query: 367 ttccaattcaatggatcgaattctagtattcaggagagggctaaagcccttgaggttgtg 426 ||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct: 12786 ttccagttcaatggatcgaattcaagtattcaggagagggctaaagcccttgaggttgtg 12727 Query: 427 caatatctcanagacactaaccatgaaggaaaatgtgatgtag 469 |||||| | | ||||| |||||||| || |||||||| |||| Sbjct: 12726 caatatttgaaagacagcaaccatgagggcaaatgtgacgtag 12684 Score = 107 bits (54), Expect = 3e-20 Identities = 57/58 (98%) Strand = Plus / Minus Query: 1 aaaaatggttcttttcagcatgatatccattattggcttggtaaagataccagtcagg 58 |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct: 13346 aaaaatggttcttttcggcatgatatccattattggcttggtaaagataccagtcagg 13289
>dbj|AP005760.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:B1047G05 Length = 145431 Score = 335 bits (169), Expect = 8e-89 Identities = 229/249 (91%) Strand = Plus / Minus Query: 55 caggatgaatctggtacagctgcaatcaagactgtggaattggatgttgctcttggcgga 114 ||||||||| |||||||||||||||||||||||||||||||||||| ||||||||| ||| Sbjct: 116038 caggatgaagctggtacagctgcaatcaagactgtggaattggatgctgctcttggtgga 115979 Query: 115 cgtggtgttcaataccgtgaagtacagggaaatgagactgagaaatttctttcctacttt 174 |||| |||||||||||||||||||||||| |||||||| |||| ||||||||| || ||| Sbjct: 115978 cgtgctgttcaataccgtgaagtacaggggaatgagacagagagatttctttcatatttt 115919 Query: 175 aaaccctgtattattccagaggaaggtggagttgcatctggtttcaggcatgctgaaatc 234 ||||| |||||||| ||||||||||||||| |||||||||||||||||||| |||||||| Sbjct: 115918 aaaccttgtattataccagaggaaggtggaattgcatctggtttcaggcatactgaaatc 115859 Query: 235 aatgagagggagcatgtaacacgattatttgtttgcagaggaaagcatacagtccatgtt 294 ||||| |||||||||| ||| | |||||||| |||||||||||||||||||||||||| Sbjct: 115858 aatgaacgggagcatgtgacaaggttatttgtctgcagaggaaagcatacagtccatgtc 115799 Query: 295 aaagaggtg 303 ||||||||| Sbjct: 115798 aaagaggtg 115790 Score = 198 bits (100), Expect = 1e-47 Identities = 147/163 (90%) Strand = Plus / Minus Query: 307 tttgcaagatcatcactcaaccatgatgacatatttattttagacacgaagtccaagata 366 |||||||||||||| || ||||||||||| |||||||||||||| || |||||||| ||| Sbjct: 115683 tttgcaagatcatcgctgaaccatgatgatatatttattttagatacaaagtccaaaata 115624 Query: 367 ttccaattcaatggatcgaattctagtattcaggagagggctaaagcccttgaggttgtg 426 ||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct: 115623 ttccagttcaatggatcgaattcaagtattcaggagagggctaaagcccttgaggttgtg 115564 Query: 427 caatatctcanagacactaaccatgaaggaaaatgtgatgtag 469 |||||| | | ||||| |||||||| || |||||||| |||| Sbjct: 115563 caatatttgaaagacagcaaccatgagggcaaatgtgacgtag 115521 Score = 107 bits (54), Expect = 3e-20 Identities = 57/58 (98%) Strand = Plus / Minus Query: 1 aaaaatggttcttttcagcatgatatccattattggcttggtaaagataccagtcagg 58 |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct: 116183 aaaaatggttcttttcggcatgatatccattattggcttggtaaagataccagtcagg 116126
>dbj|AB097407.1| Lilium longiflorum ABP115 mRNA for actin filament bundling protein P-115-ABP, complete cds Length = 3441 Score = 196 bits (99), Expect = 5e-47 Identities = 359/446 (80%) Strand = Plus / Plus Query: 19 catgatatccattattggcttggtaaagataccagtcaggatgaatctggtacagctgca 78 |||||||||||||||||||||||||| ||||| ||||||||||| |||| || ||||| Sbjct: 357 catgatatccattattggcttggtaaggatacaagtcaggatgaggctggaactgctgcc 416 Query: 79 atcaagactgtggaattggatgttgctcttggcggacgtggtgttcaataccgtgaagta 138 ||||| ||||| ||| | |||||| ||||||| ||||||| ||||| || ||||| ||| Sbjct: 417 atcaaaactgtagaacttgatgttactcttggtggacgtgcagttcagtatcgtgaggta 476 Query: 139 cagggaaatgagactgagaaatttctttcctactttaaaccctgtattattccagaggaa 198 ||||| ||||||| |||| ||| ||||| || |||||||| ||||| |||||| | ||| Sbjct: 477 cagggccatgagacagagatattcctttcatattttaaaccatgtatcattccacaagaa 536 Query: 199 ggtggagttgcatctggtttcaggcatgctgaaatcaatgagagggagcatgtaacacga 258 || || || |||||||| |||| |||| |||| |||||| || |||||| |||||| Sbjct: 537 ggcggggtagcatctggattcaagcattctgagatcaatcagcatgagcatcatacacga 596 Query: 259 ttatttgtttgcagaggaaagcatacagtccatgttaaagaggtgccttttgcaagatca 318 ||||||||||||| |||||| ||| |||||||| |||||||| || ||| | ||||| Sbjct: 597 ttatttgtttgcaaaggaaaacatgttgtccatgtaaaagaggttccctttactcgatca 656 Query: 319 tcactcaaccatgatgacatatttattttagacacgaagtccaagatattccaattcaat 378 || ||||| || |||||||| || || || || || | || ||||| || || || ||| Sbjct: 657 tccctcaatcacgatgacattttcatcttggataccgaatcaaagatttttcagtttaat 716 Query: 379 ggatcgaattctagtattcaggagagggctaaagcccttgaggttgtgcaatatctcana 438 ||||| || || |||||| ||||||| |||||| ||||||||||| ||| | ||| | Sbjct: 717 ggatctaactcgtctattcaagagaggggtaaagctcttgaggttgtccaacacatcaaa 776 Query: 439 gacactaaccatgaaggaaaatgtga 464 || ||| ||||| | ||||||||||| Sbjct: 777 gatacttaccataatggaaaatgtga 802
>ref|NM_119162.2| Arabidopsis thaliana VLN4 (ARABIDOPSIS THALIANA VILLIN 4); actin binding AT4G30160 (VLN4) mRNA, complete cds Length = 3779 Score = 87.7 bits (44), Expect = 3e-14 Identities = 167/208 (80%) Strand = Plus / Plus Query: 19 catgatatccattattggcttggtaaagataccagtcaggatgaatctggtacagctgca 78 |||||||||||||| |||||||||||||||||| |||||||||| | ||||| |||||| Sbjct: 465 catgatatccattactggcttggtaaagatacctctcaggatgaagccggtactgctgca 524 Query: 79 atcaagactgtggaattggatgttgctcttggcggacgtggtgttcaataccgtgaagta 138 | ||||| || ||||| |||| |||||| || || |||| || || || || ||||| Sbjct: 525 gttaagacagttgaattagatgctgctctaggaggtcgtgcagtgcagtatcgggaagtt 584 Query: 139 cagggaaatgagactgagaaatttctttcctactttaaaccctgtattattccagaggaa 198 || || | |||||||||||||| | || || ||||| || ||||| ||||| | ||| Sbjct: 585 caaggccacgagactgagaaattcttgtcttattttaagccatgtatcattcctcaagaa 644 Query: 199 ggtggagttgcatctggtttcaggcatg 226 |||||||| ||||| || |||| ||||| Sbjct: 645 ggtggagtagcatcaggattcaagcatg 672 Score = 73.8 bits (37), Expect = 5e-10 Identities = 58/65 (89%) Strand = Plus / Plus Query: 349 gacacgaagtccaagatattccaattcaatggatcgaattctagtattcaggagagggct 408 ||||| ||||||||||| ||||||||||||||||| ||||||||||| || ||||| || Sbjct: 789 gacacaaagtccaagattttccaattcaatggatccaattctagtatccaagagagagca 848 Query: 409 aaagc 413 ||||| Sbjct: 849 aaagc 853
>emb|Y12782.1|ATGELSOLI Arabidopsis thaliana mRNA for putative villin Length = 3749 Score = 87.7 bits (44), Expect = 3e-14 Identities = 167/208 (80%) Strand = Plus / Plus Query: 19 catgatatccattattggcttggtaaagataccagtcaggatgaatctggtacagctgca 78 |||||||||||||| |||||||||||||||||| |||||||||| | ||||| |||||| Sbjct: 430 catgatatccattactggcttggtaaagatacctctcaggatgaagccggtactgctgca 489 Query: 79 atcaagactgtggaattggatgttgctcttggcggacgtggtgttcaataccgtgaagta 138 | ||||| || ||||| |||| |||||| || || |||| || || || || ||||| Sbjct: 490 gttaagacagttgaattagatgctgctctaggaggtcgtgcagtgcagtatcgggaagtt 549 Query: 139 cagggaaatgagactgagaaatttctttcctactttaaaccctgtattattccagaggaa 198 || || | |||||||||||||| | || || ||||| || ||||| ||||| | ||| Sbjct: 550 caaggccacgagactgagaaattcttgtcttattttaagccatgtatcattcctcaagaa 609 Query: 199 ggtggagttgcatctggtttcaggcatg 226 |||||||| ||||| || |||| ||||| Sbjct: 610 ggtggagtagcatcaggattcaagcatg 637 Score = 73.8 bits (37), Expect = 5e-10 Identities = 58/65 (89%) Strand = Plus / Plus Query: 349 gacacgaagtccaagatattccaattcaatggatcgaattctagtattcaggagagggct 408 ||||| ||||||||||| ||||||||||||||||| ||||||||||| || ||||| || Sbjct: 754 gacacaaagtccaagattttccaattcaatggatccaattctagtatccaagagagagca 813 Query: 409 aaagc 413 ||||| Sbjct: 814 aaagc 818
>gb|BT005980.1| Arabidopsis thaliana At4g30160 gene, complete cds Length = 2925 Score = 87.7 bits (44), Expect = 3e-14 Identities = 167/208 (80%) Strand = Plus / Plus Query: 19 catgatatccattattggcttggtaaagataccagtcaggatgaatctggtacagctgca 78 |||||||||||||| |||||||||||||||||| |||||||||| | ||||| |||||| Sbjct: 187 catgatatccattactggcttggtaaagatacctctcaggatgaagccggtactgctgca 246 Query: 79 atcaagactgtggaattggatgttgctcttggcggacgtggtgttcaataccgtgaagta 138 | ||||| || ||||| |||| |||||| || || |||| || || || || ||||| Sbjct: 247 gttaagacagttgaattagatgctgctctaggaggtcgtgcagtgcagtatcgggaagtt 306 Query: 139 cagggaaatgagactgagaaatttctttcctactttaaaccctgtattattccagaggaa 198 || || | |||||||||||||| | || || ||||| || ||||| ||||| | ||| Sbjct: 307 caaggccacgagactgagaaattcttgtcttattttaagccatgtatcattcctcaagaa 366 Query: 199 ggtggagttgcatctggtttcaggcatg 226 |||||||| ||||| || |||| ||||| Sbjct: 367 ggtggagtagcatcaggattcaagcatg 394 Score = 73.8 bits (37), Expect = 5e-10 Identities = 58/65 (89%) Strand = Plus / Plus Query: 349 gacacgaagtccaagatattccaattcaatggatcgaattctagtattcaggagagggct 408 ||||| ||||||||||| ||||||||||||||||| ||||||||||| || ||||| || Sbjct: 511 gacacaaagtccaagattttccaattcaatggatccaattctagtatccaagagagagca 570 Query: 409 aaagc 413 ||||| Sbjct: 571 aaagc 575
>dbj|AK117296.1| Arabidopsis thaliana At4g30160 mRNA for putative villin, complete cds, clone: RAFL16-85-M14 Length = 3604 Score = 87.7 bits (44), Expect = 3e-14 Identities = 167/208 (80%) Strand = Plus / Plus Query: 19 catgatatccattattggcttggtaaagataccagtcaggatgaatctggtacagctgca 78 |||||||||||||| |||||||||||||||||| |||||||||| | ||||| |||||| Sbjct: 397 catgatatccattactggcttggtaaagatacctctcaggatgaagccggtactgctgca 456 Query: 79 atcaagactgtggaattggatgttgctcttggcggacgtggtgttcaataccgtgaagta 138 | ||||| || ||||| |||| |||||| || || |||| || || || || ||||| Sbjct: 457 gttaagacagttgaattagatgctgctctaggaggtcgtgcagtgcagtatcgggaagtt 516 Query: 139 cagggaaatgagactgagaaatttctttcctactttaaaccctgtattattccagaggaa 198 || || | |||||||||||||| | || || ||||| || ||||| ||||| | ||| Sbjct: 517 caaggccacgagactgagaaattcttgtcttattttaagccatgtatcattcctcaagaa 576 Query: 199 ggtggagttgcatctggtttcaggcatg 226 |||||||| ||||| || |||| ||||| Sbjct: 577 ggtggagtagcatcaggattcaagcatg 604 Score = 73.8 bits (37), Expect = 5e-10 Identities = 58/65 (89%) Strand = Plus / Plus Query: 349 gacacgaagtccaagatattccaattcaatggatcgaattctagtattcaggagagggct 408 ||||| ||||||||||| ||||||||||||||||| ||||||||||| || ||||| || Sbjct: 721 gacacaaagtccaagattttccaattcaatggatccaattctagtatccaagagagagca 780 Query: 409 aaagc 413 ||||| Sbjct: 781 aaagc 785
>dbj|AK122013.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033111J02, full insert sequence Length = 3537 Score = 81.8 bits (41), Expect = 2e-12 Identities = 86/101 (85%) Strand = Plus / Plus Query: 289 catgttaaagaggtgccttttgcaagatcatcactcaaccatgatgacatatttatttta 348 ||||| |||||||| |||||||| |||| || || || |||||||||||||||||| | Sbjct: 682 catgtcaaagaggttccttttgctcgatcgtccctgaatcatgatgacatatttattctg 741 Query: 349 gacacgaagtccaagatattccaattcaatggatcgaattc 389 |||||||||||||| || ||||| |||||||| || ||||| Sbjct: 742 gacacgaagtccaaaattttccagttcaatggctccaattc 782 Score = 63.9 bits (32), Expect = 4e-07 Identities = 59/68 (86%) Strand = Plus / Plus Query: 1 aaaaatggttcttttcagcatgatatccattattggcttggtaaagataccagtcaggat 60 |||||||||||| ||| ||||| || ||||| ||| |||| |||||||| ||||||||| Sbjct: 394 aaaaatggttctcttcgacatgacattcattactggattggcaaagatactagtcaggat 453 Query: 61 gaatctgg 68 |||||||| Sbjct: 454 gaatctgg 461
>dbj|AK073518.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033042I08, full insert sequence Length = 2666 Score = 81.8 bits (41), Expect = 2e-12 Identities = 86/101 (85%) Strand = Plus / Plus Query: 289 catgttaaagaggtgccttttgcaagatcatcactcaaccatgatgacatatttatttta 348 ||||| |||||||| |||||||| |||| || || || |||||||||||||||||| | Sbjct: 656 catgtcaaagaggttccttttgctcgatcgtccctgaatcatgatgacatatttattctg 715 Query: 349 gacacgaagtccaagatattccaattcaatggatcgaattc 389 |||||||||||||| || ||||| |||||||| || ||||| Sbjct: 716 gacacgaagtccaaaattttccagttcaatggctccaattc 756 Score = 63.9 bits (32), Expect = 4e-07 Identities = 59/68 (86%) Strand = Plus / Plus Query: 1 aaaaatggttcttttcagcatgatatccattattggcttggtaaagataccagtcaggat 60 |||||||||||| ||| ||||| || ||||| ||| |||| |||||||| ||||||||| Sbjct: 368 aaaaatggttctcttcgacatgacattcattactggattggcaaagatactagtcaggat 427 Query: 61 gaatctgg 68 |||||||| Sbjct: 428 gaatctgg 435
>emb|AL109796.1|ATF9N11 Arabidopsis thaliana DNA chromosome 4, BAC clone F9N11 Length = 87635 Score = 73.8 bits (37), Expect = 5e-10 Identities = 58/65 (89%) Strand = Plus / Plus Query: 349 gacacgaagtccaagatattccaattcaatggatcgaattctagtattcaggagagggct 408 ||||| ||||||||||| ||||||||||||||||| ||||||||||| || ||||| || Sbjct: 22023 gacacaaagtccaagattttccaattcaatggatccaattctagtatccaagagagagca 22082 Query: 409 aaagc 413 ||||| Sbjct: 22083 aaagc 22087 Score = 58.0 bits (29), Expect = 3e-05 Identities = 32/33 (96%) Strand = Plus / Plus Query: 19 catgatatccattattggcttggtaaagatacc 51 |||||||||||||| |||||||||||||||||| Sbjct: 21530 catgatatccattactggcttggtaaagatacc 21562
>emb|AL161576.2|ATCHRIV72 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 72 Length = 198924 Score = 73.8 bits (37), Expect = 5e-10 Identities = 58/65 (89%) Strand = Plus / Plus Query: 349 gacacgaagtccaagatattccaattcaatggatcgaattctagtattcaggagagggct 408 ||||| ||||||||||| ||||||||||||||||| ||||||||||| || ||||| || Sbjct: 95044 gacacaaagtccaagattttccaattcaatggatccaattctagtatccaagagagagca 95103 Query: 409 aaagc 413 ||||| Sbjct: 95104 aaagc 95108 Score = 58.0 bits (29), Expect = 3e-05 Identities = 32/33 (96%) Strand = Plus / Plus Query: 19 catgatatccattattggcttggtaaagatacc 51 |||||||||||||| |||||||||||||||||| Sbjct: 94551 catgatatccattactggcttggtaaagatacc 94583
>emb|AL078464.1|ATF6G3 Arabidopsis thaliana DNA chromosome 4, BAC clone F6G3 (ESSA project) Length = 93953 Score = 73.8 bits (37), Expect = 5e-10 Identities = 58/65 (89%) Strand = Plus / Plus Query: 349 gacacgaagtccaagatattccaattcaatggatcgaattctagtattcaggagagggct 408 ||||| ||||||||||| ||||||||||||||||| ||||||||||| || ||||| || Sbjct: 92214 gacacaaagtccaagattttccaattcaatggatccaattctagtatccaagagagagca 92273 Query: 409 aaagc 413 ||||| Sbjct: 92274 aaagc 92278 Score = 58.0 bits (29), Expect = 3e-05 Identities = 32/33 (96%) Strand = Plus / Plus Query: 19 catgatatccattattggcttggtaaagatacc 51 |||||||||||||| |||||||||||||||||| Sbjct: 91721 catgatatccattactggcttggtaaagatacc 91753
>gb|AC155282.1| Medicago truncatula chromosome 2 BAC clone mth2-63e12, complete sequence Length = 251117 Score = 71.9 bits (36), Expect = 2e-09 Identities = 132/164 (80%) Strand = Plus / Plus Query: 55 caggatgaatctggtacagctgcaatcaagactgtggaattggatgttgctcttggcgga 114 ||||||||| ||||| | || || |||||||| || || |||||| ||||| || ||| Sbjct: 134176 caggatgaagctggtgctgcagccatcaagacagttgagctggatgcagctctcggagga 134235 Query: 115 cgtggtgttcaataccgtgaagtacagggaaatgagactgagaaatttctttcctacttt 174 |||| |||||| || || ||||||||||| |||| ||||| || || ||||| || || Sbjct: 134236 cgtgctgttcagtatcgggaagtacagggccatgaaactgaaaagttcctttcttatttc 134295 Query: 175 aaaccctgtattattccagaggaaggtggagttgcatctggttt 218 ||||| |||||||| || | |||||||||||||| |||||||| Sbjct: 134296 aaaccttgtattatacctcaagaaggtggagttgcttctggttt 134339
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 69.9 bits (35), Expect = 7e-09 Identities = 77/91 (84%) Strand = Plus / Plus Query: 299 aggtgccttttgcaagatcatcactcaaccatgatgacatatttattttagacacgaagt 358 |||| |||||||| |||| || || || |||||||||||||||||| | |||||||||| Sbjct: 8505194 aggttccttttgctcgatcgtccctgaatcatgatgacatatttattctggacacgaagt 8505253 Query: 359 ccaagatattccaattcaatggatcgaattc 389 |||| || ||||| |||||||| || ||||| Sbjct: 8505254 ccaaaattttccagttcaatggctccaattc 8505284 Score = 44.1 bits (22), Expect = 0.41 Identities = 49/58 (84%) Strand = Plus / Plus Query: 1 aaaaatggttcttttcagcatgatatccattattggcttggtaaagataccagtcagg 58 |||||||||||| ||| ||||| || ||||| ||| |||| |||||||| ||||||| Sbjct: 8504737 aaaaatggttctcttcgacatgacattcattactggattggcaaagatactagtcagg 8504794
>dbj|AP005249.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OSJNBa0087F21 Length = 187401 Score = 69.9 bits (35), Expect = 7e-09 Identities = 77/91 (84%) Strand = Plus / Plus Query: 299 aggtgccttttgcaagatcatcactcaaccatgatgacatatttattttagacacgaagt 358 |||| |||||||| |||| || || || |||||||||||||||||| | |||||||||| Sbjct: 17105 aggttccttttgctcgatcgtccctgaatcatgatgacatatttattctggacacgaagt 17164 Query: 359 ccaagatattccaattcaatggatcgaattc 389 |||| || ||||| |||||||| || ||||| Sbjct: 17165 ccaaaattttccagttcaatggctccaattc 17195 Score = 44.1 bits (22), Expect = 0.41 Identities = 49/58 (84%) Strand = Plus / Plus Query: 1 aaaaatggttcttttcagcatgatatccattattggcttggtaaagataccagtcagg 58 |||||||||||| ||| ||||| || ||||| ||| |||| |||||||| ||||||| Sbjct: 16648 aaaaatggttctcttcgacatgacattcattactggattggcaaagatactagtcagg 16705
>dbj|AP004657.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0031C02 Length = 138843 Score = 69.9 bits (35), Expect = 7e-09 Identities = 77/91 (84%) Strand = Plus / Plus Query: 299 aggtgccttttgcaagatcatcactcaaccatgatgacatatttattttagacacgaagt 358 |||| |||||||| |||| || || || |||||||||||||||||| | |||||||||| Sbjct: 34737 aggttccttttgctcgatcgtccctgaatcatgatgacatatttattctggacacgaagt 34796 Query: 359 ccaagatattccaattcaatggatcgaattc 389 |||| || ||||| |||||||| || ||||| Sbjct: 34797 ccaaaattttccagttcaatggctccaattc 34827 Score = 44.1 bits (22), Expect = 0.41 Identities = 49/58 (84%) Strand = Plus / Plus Query: 1 aaaaatggttcttttcagcatgatatccattattggcttggtaaagataccagtcagg 58 |||||||||||| ||| ||||| || ||||| ||| |||| |||||||| ||||||| Sbjct: 34280 aaaaatggttctcttcgacatgacattcattactggattggcaaagatactagtcagg 34337
>ref|XM_480904.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2736 Score = 67.9 bits (34), Expect = 3e-08 Identities = 55/62 (88%) Strand = Plus / Plus Query: 328 catgatgacatatttattttagacacgaagtccaagatattccaattcaatggatcgaat 387 |||||||||||||||||| | |||||||||||||| || ||||| |||||||| || ||| Sbjct: 523 catgatgacatatttattctggacacgaagtccaaaattttccagttcaatggctccaat 582 Query: 388 tc 389 || Sbjct: 583 tc 584 Score = 63.9 bits (32), Expect = 4e-07 Identities = 59/68 (86%) Strand = Plus / Plus Query: 1 aaaaatggttcttttcagcatgatatccattattggcttggtaaagataccagtcaggat 60 |||||||||||| ||| ||||| || ||||| ||| |||| |||||||| ||||||||| Sbjct: 205 aaaaatggttctcttcgacatgacattcattactggattggcaaagatactagtcaggat 264 Query: 61 gaatctgg 68 |||||||| Sbjct: 265 gaatctgg 272
>gb|AC125477.13| Medicago truncatula clone mth2-12j8, complete sequence Length = 127843 Score = 63.9 bits (32), Expect = 4e-07 Identities = 38/40 (95%) Strand = Plus / Minus Query: 19 catgatatccattattggcttggtaaagataccagtcagg 58 |||||||| |||||||||||||||||||| |||||||||| Sbjct: 74371 catgatattcattattggcttggtaaagacaccagtcagg 74332 Score = 63.9 bits (32), Expect = 4e-07 Identities = 98/120 (81%) Strand = Plus / Minus Query: 112 ggacgtggtgttcaataccgtgaagtacagggaaatgagactgagaaatttctttcctac 171 ||||||| |||||| || |||||||||||||| |||| ||| |||| || || || || Sbjct: 74173 ggacgtgctgttcagtatcgtgaagtacagggtcatgaaactcagaagttcctgtcatat 74114 Query: 172 tttaaaccctgtattattccagaggaaggtggagttgcatctggtttcaggcatgctgaa 231 || ||||| |||||||| ||| | |||||||||| ||| |||||||| | ||||| |||| Sbjct: 74113 ttcaaaccatgtattataccacaagaaggtggagctgcctctggttttaagcatgttgaa 74054 Score = 54.0 bits (27), Expect = 4e-04 Identities = 93/115 (80%) Strand = Plus / Minus Query: 299 aggtgccttttgcaagatcatcactcaaccatgatgacatatttattttagacacgaagt 358 |||| |||||||| |||| ||||||||||||||||| || |||||| | || || ||| Sbjct: 73863 aggttccttttgctcgatcttcactcaaccatgatgatatttttattcttgatactgagt 73804 Query: 359 ccaagatattccaattcaatggatcgaattctagtattcaggagagggctaaagc 413 | || || |||||||| ||||| || ||||| |||||| || ||||||||||| Sbjct: 73803 caaaaatcttccaatttaatggttccaattcatctattcaagaaagggctaaagc 73749
>gb|AC125475.11| Medicago truncatula clone mth2-5j2, complete sequence Length = 165679 Score = 63.9 bits (32), Expect = 4e-07 Identities = 98/120 (81%) Strand = Plus / Plus Query: 112 ggacgtggtgttcaataccgtgaagtacagggaaatgagactgagaaatttctttcctac 171 ||||||| |||||| || |||||||||||||| |||| ||| |||| || || || || Sbjct: 13779 ggacgtgctgttcagtatcgtgaagtacagggtcatgaaactcagaagttcctgtcatat 13838 Query: 172 tttaaaccctgtattattccagaggaaggtggagttgcatctggtttcaggcatgctgaa 231 || ||||| |||||||| ||| | |||||||||| ||| |||||||| | ||||| |||| Sbjct: 13839 ttcaaaccatgtattataccacaagaaggtggagctgcctctggttttaagcatgttgaa 13898 Score = 63.9 bits (32), Expect = 4e-07 Identities = 38/40 (95%) Strand = Plus / Plus Query: 19 catgatatccattattggcttggtaaagataccagtcagg 58 |||||||| |||||||||||||||||||| |||||||||| Sbjct: 13581 catgatattcattattggcttggtaaagacaccagtcagg 13620 Score = 54.0 bits (27), Expect = 4e-04 Identities = 93/115 (80%) Strand = Plus / Plus Query: 299 aggtgccttttgcaagatcatcactcaaccatgatgacatatttattttagacacgaagt 358 |||| |||||||| |||| ||||||||||||||||| || |||||| | || || ||| Sbjct: 14089 aggttccttttgctcgatcttcactcaaccatgatgatatttttattcttgatactgagt 14148 Query: 359 ccaagatattccaattcaatggatcgaattctagtattcaggagagggctaaagc 413 | || || |||||||| ||||| || ||||| |||||| || ||||||||||| Sbjct: 14149 caaaaatcttccaatttaatggttccaattcatctattcaagaaagggctaaagc 14203
>ref|NM_125114.1| Arabidopsis thaliana actin binding AT5G57320 mRNA, complete cds Length = 2889 Score = 61.9 bits (31), Expect = 2e-06 Identities = 160/203 (78%) Strand = Plus / Plus Query: 7 ggttcttttcagcatgatatccattattggcttggtaaagataccagtcaggatgaatct 66 |||||||| || |||||||| || || ||||| ||||||||| |||| ||||||||| | Sbjct: 175 ggttctttgcatcatgatattcactactggctcggtaaagattccagccaggatgaagca 234 Query: 67 ggtacagctgcaatcaagactgtggaattggatgttgctcttggcggacgtggtgttcaa 126 ||| | | || ||| |||||| ||||| ||| || | || ||||||| |||||| Sbjct: 235 ggtgctgtagccgtcatgactgttgaattagattcagcattaggtggacgtgctgttcag 294 Query: 127 taccgtgaagtacagggaaatgagactgagaaatttctttcctactttaaaccctgtatt 186 ||||| ||||||||||| | || || ||||| |||||||||||||| ||||| || || Sbjct: 295 taccgagaagtacagggtcacgaaaccgagaagtttctttcctacttcaaaccttgcata 354 Query: 187 attccagaggaaggtggagttgc 209 || || | |||||||||||||| Sbjct: 355 atacctcaagaaggtggagttgc 377
>dbj|AB019233.1| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MJB24 Length = 58589 Score = 60.0 bits (30), Expect = 7e-06 Identities = 81/98 (82%) Strand = Plus / Plus Query: 112 ggacgtggtgttcaataccgtgaagtacagggaaatgagactgagaaatttctttcctac 171 ||||||| |||||| ||||| ||||||||||| | || || ||||| |||||||||||| Sbjct: 37293 ggacgtgctgttcagtaccgagaagtacagggtcacgaaaccgagaagtttctttcctac 37352 Query: 172 tttaaaccctgtattattccagaggaaggtggagttgc 209 || ||||| || || || || | |||||||||||||| Sbjct: 37353 ttcaaaccttgcataatacctcaagaaggtggagttgc 37390
>ref|XM_473786.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 2841 Score = 56.0 bits (28), Expect = 1e-04 Identities = 67/80 (83%) Strand = Plus / Plus Query: 1 aaaaatggttcttttcagcatgatatccattattggcttggtaaagataccagtcaggat 60 ||||||||||| |||| |||||| |||| || |||||||| || ||||| |||||||| Sbjct: 169 aaaaatggttcatttcgccatgatctccactactggcttggaaaggatactagtcaggac 228 Query: 61 gaatctggtacagctgcaat 80 ||| |||| || |||||||| Sbjct: 229 gaagctggaactgctgcaat 248 Score = 40.1 bits (20), Expect = 6.4 Identities = 40/47 (85%) Strand = Plus / Plus Query: 394 attcaggagagggctaaagcccttgaggttgtgcaatatctcanaga 440 ||||| ||||| || ||||| ||||| |||||||||||| ||| ||| Sbjct: 562 attcaagagagagcaaaagctcttgaagttgtgcaatatatcaaaga 608
>dbj|AK100738.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023118C24, full insert sequence Length = 3378 Score = 56.0 bits (28), Expect = 1e-04 Identities = 67/80 (83%) Strand = Plus / Plus Query: 1 aaaaatggttcttttcagcatgatatccattattggcttggtaaagataccagtcaggat 60 ||||||||||| |||| |||||| |||| || |||||||| || ||||| |||||||| Sbjct: 427 aaaaatggttcatttcgccatgatctccactactggcttggaaaggatactagtcaggac 486 Query: 61 gaatctggtacagctgcaat 80 ||| |||| || |||||||| Sbjct: 487 gaagctggaactgctgcaat 506 Score = 40.1 bits (20), Expect = 6.4 Identities = 40/47 (85%) Strand = Plus / Plus Query: 394 attcaggagagggctaaagcccttgaggttgtgcaatatctcanaga 440 ||||| ||||| || ||||| ||||| |||||||||||| ||| ||| Sbjct: 820 attcaagagagagcaaaagctcttgaagttgtgcaatatatcaaaga 866
>dbj|AK072888.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023149D17, full insert sequence Length = 3297 Score = 56.0 bits (28), Expect = 1e-04 Identities = 67/80 (83%) Strand = Plus / Plus Query: 1 aaaaatggttcttttcagcatgatatccattattggcttggtaaagataccagtcaggat 60 ||||||||||| |||| |||||| |||| || |||||||| || ||||| |||||||| Sbjct: 344 aaaaatggttcatttcgccatgatctccactactggcttggaaaggatactagtcaggac 403 Query: 61 gaatctggtacagctgcaat 80 ||| |||| || |||||||| Sbjct: 404 gaagctggaactgctgcaat 423 Score = 40.1 bits (20), Expect = 6.4 Identities = 40/47 (85%) Strand = Plus / Plus Query: 394 attcaggagagggctaaagcccttgaggttgtgcaatatctcanaga 440 ||||| ||||| || ||||| ||||| |||||||||||| ||| ||| Sbjct: 737 attcaagagagagcaaaagctcttgaagttgtgcaatatatcaaaga 783
>ref|NM_115601.2| Arabidopsis thaliana VLN3 (VILLIN 3); actin binding AT3G57410 (VLN3) mRNA, complete cds Length = 3479 Score = 54.0 bits (27), Expect = 4e-04 Identities = 93/115 (80%) Strand = Plus / Plus Query: 21 tgatatccattattggcttggtaaagataccagtcaggatgaatctggtacagctgcaat 80 |||||| |||| |||| ||||||||||||| || ||||||||| |||| ||||| || | Sbjct: 383 tgatatacatttttggattggtaaagatacaagccaggatgaagctggaacagcagctgt 442 Query: 81 caagactgtggaattggatgttgctcttggcggacgtggtgttcaataccgtgaa 135 |||||| || ||| | |||| |||||||| || || | ||| ||||| |||||| Sbjct: 443 caagacagttgaacttgatgcagctcttggaggccgagctgtccaatatcgtgaa 497
>gb|AY128932.1| Arabidopsis thaliana unknown protein (At3g57410) mRNA, complete cds Length = 2999 Score = 54.0 bits (27), Expect = 4e-04 Identities = 93/115 (80%) Strand = Plus / Plus Query: 21 tgatatccattattggcttggtaaagataccagtcaggatgaatctggtacagctgcaat 80 |||||| |||| |||| ||||||||||||| || ||||||||| |||| ||||| || | Sbjct: 189 tgatatacatttttggattggtaaagatacaagccaggatgaagctggaacagcagctgt 248 Query: 81 caagactgtggaattggatgttgctcttggcggacgtggtgttcaataccgtgaa 135 |||||| || ||| | |||| |||||||| || || | ||| ||||| |||||| Sbjct: 249 caagacagttgaacttgatgcagctcttggaggccgagctgtccaatatcgtgaa 303
>gb|AY093052.1| Arabidopsis thaliana unknown protein (At3g57410) mRNA, complete cds Length = 3548 Score = 54.0 bits (27), Expect = 4e-04 Identities = 93/115 (80%) Strand = Plus / Plus Query: 21 tgatatccattattggcttggtaaagataccagtcaggatgaatctggtacagctgcaat 80 |||||| |||| |||| ||||||||||||| || ||||||||| |||| ||||| || | Sbjct: 384 tgatatacatttttggattggtaaagatacaagccaggatgaagctggaacagcagctgt 443 Query: 81 caagactgtggaattggatgttgctcttggcggacgtggtgttcaataccgtgaa 135 |||||| || ||| | |||| |||||||| || || | ||| ||||| |||||| Sbjct: 444 caagacagttgaacttgatgcagctcttggaggccgagctgtccaatatcgtgaa 498
>gb|AF081203.1|AF081203 Arabidopsis thaliana villin 3 (VLN3) mRNA, complete cds Length = 3335 Score = 54.0 bits (27), Expect = 4e-04 Identities = 93/115 (80%) Strand = Plus / Plus Query: 21 tgatatccattattggcttggtaaagataccagtcaggatgaatctggtacagctgcaat 80 |||||| |||| |||| ||||||||||||| || ||||||||| |||| ||||| || | Sbjct: 263 tgatatacatttttggattggtaaagatacaagccaggatgaagctggaacagcagctgt 322 Query: 81 caagactgtggaattggatgttgctcttggcggacgtggtgttcaataccgtgaa 135 |||||| || ||| | |||| |||||||| || || | ||| ||||| |||||| Sbjct: 323 caagacagttgaacttgatgcagctcttggaggccgagctgtccaatatcgtgaa 377
>ref|NM_128543.2| Arabidopsis thaliana VLN1 (VILLIN 1); actin binding AT2G29890 (VLN1) transcript variant AT2G29890.1 mRNA, complete cds Length = 2828 Score = 50.1 bits (25), Expect = 0.007 Identities = 55/65 (84%) Strand = Plus / Plus Query: 124 caataccgtgaagtacagggaaatgagactgagaaatttctttcctactttaaaccctgt 183 |||||||||||||| || || | ||||||||||| ||||| || ||||| ||||| ||| Sbjct: 292 caataccgtgaagttcaaggtcaagagactgagaagtttctctcttacttcaaaccttgt 351 Query: 184 attat 188 ||||| Sbjct: 352 attat 356
>ref|NM_001036367.1| Arabidopsis thaliana VLN1 (VILLIN 1); actin binding AT2G29890 (VLN1) transcript variant AT2G29890.2 mRNA, complete cds Length = 3074 Score = 50.1 bits (25), Expect = 0.007 Identities = 55/65 (84%) Strand = Plus / Plus Query: 124 caataccgtgaagtacagggaaatgagactgagaaatttctttcctactttaaaccctgt 183 |||||||||||||| || || | ||||||||||| ||||| || ||||| ||||| ||| Sbjct: 442 caataccgtgaagttcaaggtcaagagactgagaagtttctctcttacttcaaaccttgt 501 Query: 184 attat 188 ||||| Sbjct: 502 attat 506
>gb|AC007113.7| Arabidopsis thaliana chromosome 2 clone F6K5 map m283, complete sequence Length = 18372 Score = 50.1 bits (25), Expect = 0.007 Identities = 55/65 (84%) Strand = Plus / Plus Query: 124 caataccgtgaagtacagggaaatgagactgagaaatttctttcctactttaaaccctgt 183 |||||||||||||| || || | ||||||||||| ||||| || ||||| ||||| ||| Sbjct: 2998 caataccgtgaagttcaaggtcaagagactgagaagtttctctcttacttcaaaccttgt 3057 Query: 184 attat 188 ||||| Sbjct: 3058 attat 3062
>gb|AC005496.3| Arabidopsis thaliana chromosome 2 clone T27A16 map mi54, complete sequence Length = 90665 Score = 50.1 bits (25), Expect = 0.007 Identities = 55/65 (84%) Strand = Plus / Minus Query: 124 caataccgtgaagtacagggaaatgagactgagaaatttctttcctactttaaaccctgt 183 |||||||||||||| || || | ||||||||||| ||||| || ||||| ||||| ||| Sbjct: 3463 caataccgtgaagttcaaggtcaagagactgagaagtttctctcttacttcaaaccttgt 3404 Query: 184 attat 188 ||||| Sbjct: 3403 attat 3399
>dbj|AK118185.1| Arabidopsis thaliana At2g29890 mRNA for putative villin 1 (VLN1), complete cds, clone: RAFL19-50-M09 Length = 2986 Score = 50.1 bits (25), Expect = 0.007 Identities = 55/65 (84%) Strand = Plus / Plus Query: 124 caataccgtgaagtacagggaaatgagactgagaaatttctttcctactttaaaccctgt 183 |||||||||||||| || || | ||||||||||| ||||| || ||||| ||||| ||| Sbjct: 441 caataccgtgaagttcaaggtcaagagactgagaagtttctctcttacttcaaaccttgt 500 Query: 184 attat 188 ||||| Sbjct: 501 attat 505
>gb|AF081201.1|AF081201 Arabidopsis thaliana villin 1 (VLN1) mRNA, complete cds Length = 2806 Score = 50.1 bits (25), Expect = 0.007 Identities = 55/65 (84%) Strand = Plus / Plus Query: 124 caataccgtgaagtacagggaaatgagactgagaaatttctttcctactttaaaccctgt 183 |||||||||||||| || || | ||||||||||| ||||| || ||||| ||||| ||| Sbjct: 292 caataccgtgaagttcaaggtcaagagactgagaagtttctctcttacttcaaaccttgt 351 Query: 184 attat 188 ||||| Sbjct: 352 attat 356
>ref|NM_129738.3| Arabidopsis thaliana VLN2 (VILLIN 2); actin binding AT2G41740 (VLN2) mRNA, complete cds Length = 3390 Score = 44.1 bits (22), Expect = 0.41 Identities = 46/54 (85%) Strand = Plus / Plus Query: 21 tgatatccattattggcttggtaaagataccagtcaggatgaatctggtacagc 74 |||||| |||| ||| ||||||||||||| || ||||||||| |||| ||||| Sbjct: 395 tgatatacatttctggattggtaaagatacaagccaggatgaagctggaacagc 448
>gb|AY731180.1| Danio rerio ubiquitous gelsolin mRNA, complete cds Length = 2547 Score = 44.1 bits (22), Expect = 0.41 Identities = 28/30 (93%) Strand = Plus / Plus Query: 197 aaggtggagttgcatctggtttcaggcatg 226 ||||||||||||||||||| |||| ||||| Sbjct: 472 aaggtggagttgcatctggattcaagcatg 501
>gb|AC015751.10| Homo sapiens chromosome 17, clone RP11-1J8, complete sequence Length = 104948 Score = 44.1 bits (22), Expect = 0.41 Identities = 28/30 (93%) Strand = Plus / Plus Query: 214 ggtttcaggcatgctgaaatcaatgagagg 243 ||||||||||||| ||||||||| |||||| Sbjct: 18469 ggtttcaggcatgttgaaatcaaggagagg 18498
>gb|BC115120.1| Danio rerio cDNA clone IMAGE:8128049, partial cds Length = 973 Score = 44.1 bits (22), Expect = 0.41 Identities = 28/30 (93%) Strand = Plus / Plus Query: 197 aaggtggagttgcatctggtttcaggcatg 226 ||||||||||||||||||| |||| ||||| Sbjct: 415 aaggtggagttgcatctggattcaagcatg 444
>gb|AY133782.1| Arabidopsis thaliana clone U11765 putative villin 2 protein (At2g41740) mRNA, complete cds Length = 2962 Score = 44.1 bits (22), Expect = 0.41 Identities = 46/54 (85%) Strand = Plus / Plus Query: 21 tgatatccattattggcttggtaaagataccagtcaggatgaatctggtacagc 74 |||||| |||| ||| ||||||||||||| || ||||||||| |||| ||||| Sbjct: 183 tgatatacatttctggattggtaaagatacaagccaggatgaagctggaacagc 236
>gb|AY080601.1| Arabidopsis thaliana putative villin 2 protein (At2g41740) mRNA, complete cds Length = 3383 Score = 44.1 bits (22), Expect = 0.41 Identities = 46/54 (85%) Strand = Plus / Plus Query: 21 tgatatccattattggcttggtaaagataccagtcaggatgaatctggtacagc 74 |||||| |||| ||| ||||||||||||| || ||||||||| |||| ||||| Sbjct: 386 tgatatacatttctggattggtaaagatacaagccaggatgaagctggaacagc 439
>emb|AL606638.2|OSJN00077 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0041A02, complete sequence Length = 166804 Score = 44.1 bits (22), Expect = 0.41 Identities = 49/58 (84%) Strand = Plus / Minus Query: 1 aaaaatggttcttttcagcatgatatccattattggcttggtaaagataccagtcagg 58 ||||||||||| |||| |||||| |||| || |||||||| || ||||| ||||||| Sbjct: 139045 aaaaatggttcatttcgccatgatctccactactggcttggaaaggatactagtcagg 138988 Score = 40.1 bits (20), Expect = 6.4 Identities = 40/47 (85%) Strand = Plus / Minus Query: 394 attcaggagagggctaaagcccttgaggttgtgcaatatctcanaga 440 ||||| ||||| || ||||| ||||| |||||||||||| ||| ||| Sbjct: 138479 attcaagagagagcaaaagctcttgaagttgtgcaatatatcaaaga 138433
>emb|CR762400.8| Zebrafish DNA sequence from clone DKEYP-46G10 in linkage group 21, complete sequence Length = 153630 Score = 44.1 bits (22), Expect = 0.41 Identities = 28/30 (93%) Strand = Plus / Minus Query: 197 aaggtggagttgcatctggtttcaggcatg 226 ||||||||||||||||||| |||| ||||| Sbjct: 82599 aaggtggagttgcatctggattcaagcatg 82570
>gb|AC021311.8| Homo sapiens chromosome 8, clone RP11-697L23, complete sequence Length = 151778 Score = 44.1 bits (22), Expect = 0.41 Identities = 25/26 (96%) Strand = Plus / Plus Query: 181 tgtattattccagaggaaggtggagt 206 |||||||| ||||||||||||||||| Sbjct: 64736 tgtattataccagaggaaggtggagt 64761
>gb|AC119741.3| Homo sapiens 3 BAC RP11-570O24 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 191857 Score = 44.1 bits (22), Expect = 0.41 Identities = 22/22 (100%) Strand = Plus / Plus Query: 144 aaatgagactgagaaatttctt 165 |||||||||||||||||||||| Sbjct: 86 aaatgagactgagaaatttctt 107
>gb|AC117464.4| Homo sapiens 3 BAC RP11-412N9 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 154728 Score = 44.1 bits (22), Expect = 0.41 Identities = 22/22 (100%) Strand = Plus / Plus Query: 144 aaatgagactgagaaatttctt 165 |||||||||||||||||||||| Sbjct: 128186 aaatgagactgagaaatttctt 128207
>gb|AC027233.7| Homo sapiens chromosome 17, clone RP11-205P19, complete sequence Length = 174937 Score = 44.1 bits (22), Expect = 0.41 Identities = 28/30 (93%) Strand = Plus / Minus Query: 214 ggtttcaggcatgctgaaatcaatgagagg 243 ||||||||||||| ||||||||| |||||| Sbjct: 49077 ggtttcaggcatgttgaaatcaaggagagg 49048
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 44.1 bits (22), Expect = 0.41 Identities = 49/58 (84%) Strand = Plus / Minus Query: 1 aaaaatggttcttttcagcatgatatccattattggcttggtaaagataccagtcagg 58 ||||||||||| |||| |||||| |||| || |||||||| || ||||| ||||||| Sbjct: 30505668 aaaaatggttcatttcgccatgatctccactactggcttggaaaggatactagtcagg 30505611 Score = 40.1 bits (20), Expect = 6.4 Identities = 40/47 (85%) Strand = Plus / Minus Query: 394 attcaggagagggctaaagcccttgaggttgtgcaatatctcanaga 440 ||||| ||||| || ||||| ||||| |||||||||||| ||| ||| Sbjct: 30505102 attcaagagagagcaaaagctcttgaagttgtgcaatatatcaaaga 30505056
>ref|NM_001012312.1| Danio rerio gelsolin (amyloidosis, Finnish type) (gsn), mRNA Length = 2547 Score = 44.1 bits (22), Expect = 0.41 Identities = 28/30 (93%) Strand = Plus / Plus Query: 197 aaggtggagttgcatctggtttcaggcatg 226 ||||||||||||||||||| |||| ||||| Sbjct: 472 aaggtggagttgcatctggattcaagcatg 501
>gb|AF088901.1|AF088901 Lilium longiflorum actin bundling protein ABP135 (Y5-7) mRNA, complete cds Length = 3295 Score = 44.1 bits (22), Expect = 0.41 Identities = 85/106 (80%) Strand = Plus / Plus Query: 20 atgatatccattattggcttggtaaagataccagtcaggatgaatctggtacagctgcaa 79 ||||||| || | |||| |||| || ||||| || || || ||| |||| || ||||||| Sbjct: 310 atgatattcacttttggattggcaaggatacaagccaagacgaagctggaactgctgcaa 369 Query: 80 tcaagactgtggaattggatgttgctcttggcggacgtggtgttca 125 |||||||||| ||| | |||| || ||||| ||||||| |||||| Sbjct: 370 tcaagactgttgaacttgatgctgtccttggaggacgtgctgttca 415
>gb|AC025622.3| Mus musculus chromosome 3, clone RP23-453M11, complete sequence Length = 182338 Score = 44.1 bits (22), Expect = 0.41 Identities = 25/26 (96%) Strand = Plus / Plus Query: 330 tgatgacatatttattttagacacga 355 ||||||||| |||||||||||||||| Sbjct: 116654 tgatgacatgtttattttagacacga 116679
>ref|XM_716993.1| Candida albicans SC5314 hypothetical protein (CaO19_11500), mRNA Length = 945 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 134 aagtacagggaaatgagactg 154 ||||||||||||||||||||| Sbjct: 538 aagtacagggaaatgagactg 518
>ref|XM_716832.1| Candida albicans SC5314 hypothetical protein (CaO19_4017), mRNA Length = 945 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 134 aagtacagggaaatgagactg 154 ||||||||||||||||||||| Sbjct: 538 aagtacagggaaatgagactg 518
>emb|AL929351.1|PFA929351 Plasmodium falciparum strain 3D7, chromosome 5, segment 1/4 Length = 347050 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 324 caaccatgatgacatatttat 344 ||||||||||||||||||||| Sbjct: 301300 caaccatgatgacatatttat 301320
>gb|AC110913.13| Mus musculus chromosome 19, clone RP24-399E19, complete sequence Length = 208309 Score = 40.1 bits (20), Expect = 6.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 9 ttcttttcagcatgatatccatta 32 ||||||||| |||||||||||||| Sbjct: 94619 ttcttttcatcatgatatccatta 94642
>gb|AC099695.15| Mus musculus chromosome 10, clone RP23-234P12, complete sequence Length = 169161 Score = 40.1 bits (20), Expect = 6.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 180 ctgtattattccagaggaaggtgg 203 ||||||||| |||||||||||||| Sbjct: 154703 ctgtattatgccagaggaaggtgg 154680
>gb|AC147061.3| Pan troglodytes BAC clone RP43-156P2 from 7, complete sequence Length = 148371 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 12 ttttcagcatgatatccatt 31 |||||||||||||||||||| Sbjct: 111430 ttttcagcatgatatccatt 111411
>gb|AC158616.8| Mus musculus 10 BAC RP23-227E23 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 248127 Score = 40.1 bits (20), Expect = 6.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 180 ctgtattattccagaggaaggtgg 203 ||||||||| |||||||||||||| Sbjct: 148209 ctgtattatgccagaggaaggtgg 148232
>emb|CR513783.5| Zebrafish DNA sequence from clone DKEY-246P3 in linkage group 25, complete sequence Length = 170681 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 321 actcaaccatgatgacatat 340 |||||||||||||||||||| Sbjct: 24081 actcaaccatgatgacatat 24062
>gb|AC151481.4| Medicago truncatula clone mth2-3m11, complete sequence Length = 99012 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 300 ggtgccttttgcaagatcat 319 |||||||||||||||||||| Sbjct: 94182 ggtgccttttgcaagatcat 94201
>emb|AL133349.7| Human DNA sequence from clone RP1-140L23 on chromosome 11p13-14.1 Contains GSSs, complete sequence Length = 65166 Score = 40.1 bits (20), Expect = 6.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 173 ttaaaccctgtattattccagagg 196 ||||||||||| |||||||||||| Sbjct: 1674 ttaaaccctgtcttattccagagg 1651
>gb|AC158786.8| Mus musculus chromosome 5, clone RP23-228M24, complete sequence Length = 210494 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 201 tggagttgcatctggtttca 220 |||||||||||||||||||| Sbjct: 81005 tggagttgcatctggtttca 80986
>gb|AC009659.5| Homo sapiens chromosome 11, clone RP11-362G8, complete sequence Length = 175372 Score = 40.1 bits (20), Expect = 6.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 173 ttaaaccctgtattattccagagg 196 ||||||||||| |||||||||||| Sbjct: 175046 ttaaaccctgtcttattccagagg 175023
>ref|NM_001017846.1| Danio rerio zgc:110164 (zgc:110164), mRNA Length = 1319 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 275 gaaagcatacagtccatgtt 294 |||||||||||||||||||| Sbjct: 273 gaaagcatacagtccatgtt 254
>gb|AC093323.3| Homo sapiens BAC clone RP11-539L10 from 4, complete sequence Length = 195576 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 137 tacagggaaatgagactgag 156 |||||||||||||||||||| Sbjct: 114843 tacagggaaatgagactgag 114862
>gb|AC016017.14| Mus Musculus Strain C57BL6/J Chromosome 6 BAC Clone RP23-274F23, complete sequence Length = 184892 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 62 aatctggtacagctgcaatc 81 |||||||||||||||||||| Sbjct: 63454 aatctggtacagctgcaatc 63435
>gb|AC113146.2| Homo sapiens chromosome 15, clone RP11-265N7, complete sequence Length = 178395 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 305 cttttgcaagatcatcactc 324 |||||||||||||||||||| Sbjct: 93572 cttttgcaagatcatcactc 93591
>gb|AC013799.6| Homo sapiens, clone RP11-20J1, complete sequence Length = 186076 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 78 aatcaagactgtggaattgg 97 |||||||||||||||||||| Sbjct: 28902 aatcaagactgtggaattgg 28921
>ref|XM_691908.1| PREDICTED: Danio rerio similar to Protein MICAL-3 (LOC568573), mRNA Length = 3707 Score = 40.1 bits (20), Expect = 6.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 176 aaccctgtattattccagaggaag 199 ||||||||| |||||||||||||| Sbjct: 2659 aaccctgtaatattccagaggaag 2682
>ref|XM_693238.1| PREDICTED: Danio rerio similar to Regulator of G-protein signaling 16 (RGS16) (Retinally abundant regulator of G-protein signaling) (RGS-R) (LOC569828), mRNA Length = 1292 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 275 gaaagcatacagtccatgtt 294 |||||||||||||||||||| Sbjct: 270 gaaagcatacagtccatgtt 251
>gb|AC078906.6| Homo sapiens, clone RP11-142A23, complete sequence Length = 156426 Score = 40.1 bits (20), Expect = 6.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 324 caaccatgatgacatatttatttt 347 |||||||| ||||||||||||||| Sbjct: 91070 caaccatgttgacatatttatttt 91093
>dbj|AK085160.1| Mus musculus 13 days embryo lung cDNA, RIKEN full-length enriched library, clone:D430047B13 product:unclassifiable, full insert sequence Length = 2750 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 95 tggatgttgctcttggcgga 114 |||||||||||||||||||| Sbjct: 1558 tggatgttgctcttggcgga 1577
>gb|AC026464.7| Homo sapiens chromosome 16 clone RP11-343C2, complete sequence Length = 190185 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 78 aatcaagactgtggaattgg 97 |||||||||||||||||||| Sbjct: 146677 aatcaagactgtggaattgg 146696
>gb|AC154588.2| Mus musculus BAC clone RP23-363L9 from chromosome 16, complete sequence Length = 200787 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 95 tggatgttgctcttggcgga 114 |||||||||||||||||||| Sbjct: 123675 tggatgttgctcttggcgga 123694
>gb|AC022841.4|AC022841 Homo sapiens chromosome 15, clone RP11-213C21, complete sequence Length = 157657 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 305 cttttgcaagatcatcactc 324 |||||||||||||||||||| Sbjct: 120077 cttttgcaagatcatcactc 120058
>gb|BC092767.1| Danio rerio zgc:110164, mRNA (cDNA clone MGC:110164 IMAGE:7290238), complete cds Length = 1319 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 275 gaaagcatacagtccatgtt 294 |||||||||||||||||||| Sbjct: 273 gaaagcatacagtccatgtt 254
>emb|BX548066.3| Zebrafish DNA sequence from clone CH211-226F1 in linkage group 20, complete sequence Length = 185926 Score = 40.1 bits (20), Expect = 6.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 176 aaccctgtattattccagaggaag 199 ||||||||| |||||||||||||| Sbjct: 105553 aaccctgtaatattccagaggaag 105530
>gb|AC154616.2| Mus musculus BAC clone RP23-319O9 from 14, complete sequence Length = 179927 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 131 gtgaagtacagggaaatgag 150 |||||||||||||||||||| Sbjct: 124329 gtgaagtacagggaaatgag 124348 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 131 gtgaagtacagggaaatgag 150 |||||||||||||||||||| Sbjct: 123840 gtgaagtacagggaaatgag 123821
>emb|CR384055.4| Zebrafish DNA sequence from clone CH211-236C15 in linkage group 25, complete sequence Length = 90680 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 321 actcaaccatgatgacatat 340 |||||||||||||||||||| Sbjct: 84108 actcaaccatgatgacatat 84127
>gb|AC079438.30| Mus musculus strain C57BL/6J chromosome 6 clone rp23-176m22, complete sequence Length = 209643 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 62 aatctggtacagctgcaatc 81 |||||||||||||||||||| Sbjct: 89642 aatctggtacagctgcaatc 89661 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 5,203,164 Number of Sequences: 3902068 Number of extensions: 5203164 Number of successful extensions: 96954 Number of sequences better than 10.0: 81 Number of HSP's better than 10.0 without gapping: 81 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 96690 Number of HSP's gapped (non-prelim): 261 length of query: 477 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 455 effective length of database: 17,147,199,772 effective search space: 7801975896260 effective search space used: 7801975896260 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
