ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | bastl08f09 |
|---|---|
| Clone Library Name | barley_pub |
>TREF1_HUMAN (Q96PN7) Transcriptional-regulating factor 1| (Transcriptional-regulating protein 132) (Zinc finger transcription factor TReP-132) (Zinc finger protein rapa) Length = 1200 Score = 31.2 bits (69), Expect = 1.2 Identities = 16/38 (42%), Positives = 22/38 (57%), Gaps = 1/38 (2%) Frame = +1 Query: 79 NSAHKGGADKVFASPVPPH-PSRTQDPIGLDLGLQGEG 189 N+ GG D ASP+ PH P T+D +GL +G + G Sbjct: 38 NAVTGGGMDAPQASPISPHFPQDTRDGLGLPVGSKNLG 75
>RF1_SALTY (P0A287) Peptide chain release factor 1 (RF-1)| Length = 360 Score = 30.0 bits (66), Expect = 2.7 Identities = 19/55 (34%), Positives = 31/55 (56%), Gaps = 3/55 (5%) Frame = +3 Query: 279 QLRERMREKLREFKGSAEVADYVIVLLRNGKREDEARK---ELRIFLGVDDSALF 434 ++RE +E+LRE K +E + + +L K D+ R E+R G D++ALF Sbjct: 73 EMREMAQEELREAKEKSEQLEQQLQVLLLPKDPDDERNAFLEVRAGTGGDEAALF 127
>RF1_SALTI (P0A288) Peptide chain release factor 1 (RF-1)| Length = 360 Score = 30.0 bits (66), Expect = 2.7 Identities = 19/55 (34%), Positives = 31/55 (56%), Gaps = 3/55 (5%) Frame = +3 Query: 279 QLRERMREKLREFKGSAEVADYVIVLLRNGKREDEARK---ELRIFLGVDDSALF 434 ++RE +E+LRE K +E + + +L K D+ R E+R G D++ALF Sbjct: 73 EMREMAQEELREAKEKSEQLEQQLQVLLLPKDPDDERNAFLEVRAGTGGDEAALF 127
>GUNG_CLOTM (Q05332) Endoglucanase G precursor (EC 3.2.1.4) (Egg)| (Endo-1,4-beta-glucanase) (Cellulase G) Length = 566 Score = 30.0 bits (66), Expect = 2.7 Identities = 14/30 (46%), Positives = 19/30 (63%) Frame = +3 Query: 198 ASATMEAADLATDGRIFKADFTDSGAYQLR 287 ASA M+AAD+ DG++ D+T Y LR Sbjct: 528 ASANMDAADVNADGKVNSTDYTVLKRYLLR 557
>Y200_MYCPN (Q50288) Hypothetical lipoprotein MPN200 precursor (GT9_orf798)| Length = 798 Score = 30.0 bits (66), Expect = 2.7 Identities = 24/83 (28%), Positives = 37/83 (44%), Gaps = 1/83 (1%) Frame = +3 Query: 189 VLEASATMEAADLATDGRI-FKADFTDSGAYQLRERMREKLREFKGSAEVADYVIVLLRN 365 +L A T D DG+I + T GA + + +K E K + DY I + + Sbjct: 19 ILAACGTRGKFDQIDDGKIKLASSLTSKGAANALQAIVKKYNEVK---KPGDYPIEITQI 75 Query: 366 GKREDEARKELRIFLGVDDSALF 434 D+AR +L+ +GV D F Sbjct: 76 AGGYDQARVDLQSRVGVKDKTNF 98
>FRDA_HELPY (O06913) Fumarate reductase flavoprotein subunit (EC 1.3.99.1)| Length = 714 Score = 29.6 bits (65), Expect = 3.5 Identities = 17/42 (40%), Positives = 24/42 (57%) Frame = +3 Query: 276 YQLRERMREKLREFKGSAEVADYVIVLLRNGKREDEARKELR 401 Y++RERM+E V D + + R GKR +EA KEL+ Sbjct: 491 YEIRERMKE----------VMDEKVGVFREGKRLEEALKELQ 522
>ZN688_HUMAN (Q8WV14) Zinc finger protein 688| Length = 782 Score = 29.6 bits (65), Expect = 3.5 Identities = 10/17 (58%), Positives = 12/17 (70%) Frame = -3 Query: 188 PSPCNPRSSPMGSWVRD 138 P CNPR SPM W++D Sbjct: 161 PEFCNPRQSPMNPWLKD 177
>MBA2_ECOLI (P07112) Mobilization protein A| Length = 708 Score = 29.3 bits (64), Expect = 4.5 Identities = 21/50 (42%), Positives = 25/50 (50%), Gaps = 7/50 (14%) Frame = -2 Query: 129 RNRRGEDLIRAALVSGVRKEAW-----AGRRSSASREEAPA--PGGGDGV 1 RNR+ E++ R VSG + A GRRS A E PA G G GV Sbjct: 251 RNRQSEEIQRHQRVSGADRTAGPEHGDTGRRSPAGHEPDPAGQRGAGGGV 300
>RF1_SHIFL (P0A7I3) Peptide chain release factor 1 (RF-1)| Length = 360 Score = 28.9 bits (63), Expect = 5.9 Identities = 18/55 (32%), Positives = 31/55 (56%), Gaps = 3/55 (5%) Frame = +3 Query: 279 QLRERMREKLREFKGSAEVADYVIVLLRNGKREDEARK---ELRIFLGVDDSALF 434 ++RE +++LRE K +E + + +L K D+ R E+R G D++ALF Sbjct: 73 EMREMAQDELREAKEKSEQLEQQLQVLLLPKDPDDERNAFLEVRAGTGGDEAALF 127
>RF1_ECOLI (P0A7I0) Peptide chain release factor 1 (RF-1)| Length = 360 Score = 28.9 bits (63), Expect = 5.9 Identities = 18/55 (32%), Positives = 31/55 (56%), Gaps = 3/55 (5%) Frame = +3 Query: 279 QLRERMREKLREFKGSAEVADYVIVLLRNGKREDEARK---ELRIFLGVDDSALF 434 ++RE +++LRE K +E + + +L K D+ R E+R G D++ALF Sbjct: 73 EMREMAQDELREAKEKSEQLEQQLQVLLLPKDPDDERNAFLEVRAGTGGDEAALF 127
>RF1_ECOL6 (P0A7I1) Peptide chain release factor 1 (RF-1)| Length = 360 Score = 28.9 bits (63), Expect = 5.9 Identities = 18/55 (32%), Positives = 31/55 (56%), Gaps = 3/55 (5%) Frame = +3 Query: 279 QLRERMREKLREFKGSAEVADYVIVLLRNGKREDEARK---ELRIFLGVDDSALF 434 ++RE +++LRE K +E + + +L K D+ R E+R G D++ALF Sbjct: 73 EMREMAQDELREAKEKSEQLEQQLQVLLLPKDPDDERNAFLEVRAGTGGDEAALF 127
>RF1_ECO57 (P0A7I2) Peptide chain release factor 1 (RF-1)| Length = 360 Score = 28.9 bits (63), Expect = 5.9 Identities = 18/55 (32%), Positives = 31/55 (56%), Gaps = 3/55 (5%) Frame = +3 Query: 279 QLRERMREKLREFKGSAEVADYVIVLLRNGKREDEARK---ELRIFLGVDDSALF 434 ++RE +++LRE K +E + + +L K D+ R E+R G D++ALF Sbjct: 73 EMREMAQDELREAKEKSEQLEQQLQVLLLPKDPDDERNAFLEVRAGTGGDEAALF 127
>FRDA_HELPJ (Q9ZMP0) Fumarate reductase flavoprotein subunit (EC 1.3.99.1)| Length = 714 Score = 28.5 bits (62), Expect = 7.7 Identities = 16/42 (38%), Positives = 24/42 (57%) Frame = +3 Query: 276 YQLRERMREKLREFKGSAEVADYVIVLLRNGKREDEARKELR 401 Y++RERM+E V D + + R GK+ +EA KEL+ Sbjct: 491 YEIRERMKE----------VMDEKVGVFREGKKLEEALKELQ 522
>RAPA_PSEAE (Q9HYT6) RNA polymerase-associated protein rapA (EC 3.6.1.-)| (ATP-dependent helicase hepA) Length = 950 Score = 28.5 bits (62), Expect = 7.7 Identities = 25/85 (29%), Positives = 36/85 (42%) Frame = +3 Query: 186 GVLEASATMEAADLATDGRIFKADFTDSGAYQLRERMREKLREFKGSAEVADYVIVLLRN 365 GVL +AT E L D + D + E R + +++ VA+ V LL + Sbjct: 307 GVLLLTATPE--QLGQDSHFARLRLLDPNRFHDLEAFRRESEQYR---PVAEAVQELLDH 361 Query: 366 GKREDEARKELRIFLGVDDSALFIS 440 G ARK + FLG + L S Sbjct: 362 GSLSAGARKAIHGFLGSEGDELLAS 386
>DP2L_THEVO (Q97CR6) DNA polymerase II large subunit (EC 2.7.7.7) (Pol II)| Length = 1088 Score = 28.5 bits (62), Expect = 7.7 Identities = 17/56 (30%), Positives = 25/56 (44%) Frame = +3 Query: 213 EAADLATDGRIFKADFTDSGAYQLRERMREKLREFKGSAEVADYVIVLLRNGKRED 380 E DLA+ R D TD L M E++ G + +AD + L + RE+ Sbjct: 28 ECFDLASQARELGMDVTDKVEIPLASDMAERIEALIGISGIADQIRDLSKKMSREE 83 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 45,909,541 Number of Sequences: 219361 Number of extensions: 765724 Number of successful extensions: 3780 Number of sequences better than 10.0: 15 Number of HSP's better than 10.0 without gapping: 3659 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3778 length of database: 80,573,946 effective HSP length: 101 effective length of database: 58,418,485 effective search space used: 2628831825 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
