ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl08f08 |
|---|---|
| Clone Library Name | barley_pub |
>SND1_BRARE (Q7ZT42) Staphylococcal nuclease domain-containing protein 1 (p100| co-activator) (100 kDa coactivator) (4SNc-Tudor domain protein) Length = 897 Score = 80.5 bits (197), Expect = 2e-15 Identities = 52/128 (40%), Positives = 70/128 (54%), Gaps = 13/128 (10%) Frame = +2 Query: 137 IMASNTGASGWLRGKVKAVTSGDCLLIMGSTKAEIPPEKSITLSYLMAPRLARRG----- 301 + +S A RG VK V SG +++ G + PPE+ I LS + A LARR Sbjct: 9 VQSSQASAPQLQRGIVKMVLSGCAIIVRGQPRGGPPPERQINLSNIRAGALARRAIQGQP 68 Query: 302 ----GVDEPFAWESREFLRKLCVGKEVTFRVDYTAPNIGREIGTVYLG----DKNVAYLV 457 DEP+A+++REF+RK +GKEV F V+ P GRE G VYLG +N+A + Sbjct: 69 DTKDTPDEPWAFQAREFMRKKVIGKEVCFTVENKTPQ-GREYGMVYLGKDTSGENIAESL 127 Query: 458 VAAGWARV 481 VA G A V Sbjct: 128 VAEGLAMV 135 Score = 45.1 bits (105), Expect = 1e-04 Identities = 40/123 (32%), Positives = 56/123 (45%), Gaps = 22/123 (17%) Frame = +2 Query: 179 KVKAVTSGDCLLIMGSTKAEIPPEKSITLSYLMAPRLAR-----------RGGVDEPFAW 325 KV V + D +++ K K+I LS + PRL R D P+ + Sbjct: 347 KVMQVVNADAIVV----KLNSGEYKTIHLSSIRPPRLEGEEKNKDKDKRFRPLYDIPYMF 402 Query: 326 ESREFLRKLCVGKEVTFRVDY-----TAPNIG------REIGTVYLGDKNVAYLVVAAGW 472 E+REFLRK +GK+V VDY A +G R TV +G N+A +V+ G Sbjct: 403 EAREFLRKKLIGKKVNVTVDYIRAATNAMEMGVPAFPERTCATVTIGGINIAEALVSKGL 462 Query: 473 ARV 481 A V Sbjct: 463 ATV 465
>SND1_BOVIN (Q863B3) Staphylococcal nuclease domain-containing protein 1 (p100| co-activator) (100 kDa coactivator) Length = 910 Score = 79.7 bits (195), Expect = 4e-15 Identities = 49/114 (42%), Positives = 65/114 (57%), Gaps = 13/114 (11%) Frame = +2 Query: 173 RGKVKAVTSGDCLLIMGSTKAEIPPEKSITLSYLMAPRLARRGGV---------DEPFAW 325 RG VK V SG +++ G + PPE+ I LS + A LARR V DEP+A+ Sbjct: 21 RGIVKMVLSGCAIIVRGQPRGGPPPERQINLSNIRAGNLARRAAVAQPDAKDTPDEPWAF 80 Query: 326 ESREFLRKLCVGKEVTFRVDYTAPNIGREIGTVYLG----DKNVAYLVVAAGWA 475 +REFLRK +GKEV F ++ P GRE G +YLG +N+A +VA G A Sbjct: 81 PAREFLRKKLIGKEVCFTIENKTPQ-GREYGMIYLGKDTNGENIAESLVAEGLA 133 Score = 46.6 bits (109), Expect = 3e-05 Identities = 38/121 (31%), Positives = 54/121 (44%), Gaps = 20/121 (16%) Frame = +2 Query: 179 KVKAVTSGDCLLIMGSTKAEIPPEKSITLSYLMAPRLARRGGVDE----------PFAWE 328 KV V + D +++ K K+I LS + PRL D+ P+ +E Sbjct: 346 KVMQVLNADAIVV----KLNSGDYKTIHLSSIRPPRLEGENTQDKNKKLRPLYDIPYMFE 401 Query: 329 SREFLRKLCVGKEVTFRVDYTAPN----------IGREIGTVYLGDKNVAYLVVAAGWAR 478 +REFLRK +GK+V VDY P R TV +G N+A +V+ G A Sbjct: 402 AREFLRKKLIGKKVNVTVDYIRPASPATDTVPAFSERTCATVTIGGINIAEALVSKGLAT 461 Query: 479 V 481 V Sbjct: 462 V 462
>SND1_MOUSE (Q78PY7) Staphylococcal nuclease domain-containing protein 1 (p100| co-activator) (100 kDa coactivator) Length = 910 Score = 79.3 bits (194), Expect = 5e-15 Identities = 53/133 (39%), Positives = 72/133 (54%), Gaps = 19/133 (14%) Frame = +2 Query: 134 AIMASNTGASGW------LRGKVKAVTSGDCLLIMGSTKAEIPPEKSITLSYLMAPRLAR 295 A A ++G+SG RG VK V SG +++ G + PPE+ I LS + A LAR Sbjct: 2 ASSAQSSGSSGGPAVPTVQRGIVKMVLSGCAIIVRGQPRGGPPPERQINLSNIRAGNLAR 61 Query: 296 RGGV---------DEPFAWESREFLRKLCVGKEVTFRVDYTAPNIGREIGTVYLG----D 436 R DEP+A+ +REFLRK +GKEV F ++ P GRE G +YLG Sbjct: 62 RAAATQPDGKDTPDEPWAFPAREFLRKKLIGKEVCFTIENKTPQ-GREYGMIYLGKDTNG 120 Query: 437 KNVAYLVVAAGWA 475 +N+A +VA G A Sbjct: 121 ENIAESLVAEGLA 133 Score = 45.8 bits (107), Expect = 6e-05 Identities = 39/121 (32%), Positives = 54/121 (44%), Gaps = 20/121 (16%) Frame = +2 Query: 179 KVKAVTSGDCLLIMGSTKAEIPPEKSITLSYLMAPRLAR----------RGGVDEPFAWE 328 KV V + D +++ K K+I LS + PRL R D P+ +E Sbjct: 346 KVMQVLNADAIVV----KLNSGDYKTIHLSSIRPPRLEGDNIQDKNKKLRPLYDIPYMFE 401 Query: 329 SREFLRKLCVGKEVTFRVDYTAPN----------IGREIGTVYLGDKNVAYLVVAAGWAR 478 +REFLRK +GK+V VDY P R TV +G N+A +V+ G A Sbjct: 402 AREFLRKKLIGKKVNVTVDYIRPASPATETVPAFSERTCATVTIGGINIAEALVSKGLAT 461 Query: 479 V 481 V Sbjct: 462 V 462
>SND1_RAT (Q66X93) Staphylococcal nuclease domain-containing protein 1 (p100| co-activator) (100 kDa coactivator) (SND p102) (p105 coactivator) Length = 909 Score = 79.0 bits (193), Expect = 6e-15 Identities = 52/130 (40%), Positives = 71/130 (54%), Gaps = 19/130 (14%) Frame = +2 Query: 143 ASNTGASGW------LRGKVKAVTSGDCLLIMGSTKAEIPPEKSITLSYLMAPRLARRGG 304 A ++G+SG RG VK V SG +++ G + PPE+ I LS + A LARR Sbjct: 4 AQSSGSSGGPAVPTVQRGIVKMVLSGCAIIVRGQPRGGPPPERQINLSNIRAGNLARRAA 63 Query: 305 V---------DEPFAWESREFLRKLCVGKEVTFRVDYTAPNIGREIGTVYLG----DKNV 445 DEP+A+ +REFLRK +GKEV F ++ P GRE G +YLG +N+ Sbjct: 64 ATQPDGKDTPDEPWAFPAREFLRKKLIGKEVCFTIENKTPQ-GREYGMIYLGKDTNGENI 122 Query: 446 AYLVVAAGWA 475 A +VA G A Sbjct: 123 AESLVAEGLA 132 Score = 46.2 bits (108), Expect = 5e-05 Identities = 39/121 (32%), Positives = 55/121 (45%), Gaps = 20/121 (16%) Frame = +2 Query: 179 KVKAVTSGDCLLIMGSTKAEIPPEKSITLSYLMAPRLAR----------RGGVDEPFAWE 328 KV V + D +++ K K+I LS + PRL R D P+ +E Sbjct: 345 KVMQVLNADAIVV----KLNSGDYKTIHLSSIRPPRLEGDNIQDKNKKLRPLYDIPYMFE 400 Query: 329 SREFLRKLCVGKEVTFRVDYTAPN----------IGREIGTVYLGDKNVAYLVVAAGWAR 478 +REFLRK +GK+V+ VDY P R TV +G N+A +V+ G A Sbjct: 401 AREFLRKKLIGKKVSVTVDYIRPASPATETVPAFSERTCATVTIGGINIAEALVSKGLAT 460 Query: 479 V 481 V Sbjct: 461 V 461
>SND1_HUMAN (Q7KZF4) Staphylococcal nuclease domain-containing protein 1 (p100| co-activator) (100 kDa coactivator) (EBNA2 coactivator p100) Length = 910 Score = 77.8 bits (190), Expect = 1e-14 Identities = 47/114 (41%), Positives = 64/114 (56%), Gaps = 13/114 (11%) Frame = +2 Query: 173 RGKVKAVTSGDCLLIMGSTKAEIPPEKSITLSYLMAPRLARRGGV---------DEPFAW 325 RG +K V SG +++ G + PPE+ I LS + A LARR DEP+A+ Sbjct: 21 RGIIKMVLSGCAIIVRGQPRGGPPPERQINLSNIRAGNLARRAAATQPDAKDTPDEPWAF 80 Query: 326 ESREFLRKLCVGKEVTFRVDYTAPNIGREIGTVYLG----DKNVAYLVVAAGWA 475 +REFLRK +GKEV F ++ P GRE G +YLG +N+A +VA G A Sbjct: 81 PAREFLRKKLIGKEVCFTIENKTPQ-GREYGMIYLGKDTNGENIAESLVAEGLA 133 Score = 46.6 bits (109), Expect = 3e-05 Identities = 38/121 (31%), Positives = 54/121 (44%), Gaps = 20/121 (16%) Frame = +2 Query: 179 KVKAVTSGDCLLIMGSTKAEIPPEKSITLSYLMAPRLARRGGVDE----------PFAWE 328 KV V + D +++ K K+I LS + PRL D+ P+ +E Sbjct: 346 KVMQVLNADAIVV----KLNSGDYKTIHLSSIRPPRLEGENTQDKNKKLRPLYDIPYMFE 401 Query: 329 SREFLRKLCVGKEVTFRVDYTAPN----------IGREIGTVYLGDKNVAYLVVAAGWAR 478 +REFLRK +GK+V VDY P R TV +G N+A +V+ G A Sbjct: 402 AREFLRKKLIGKKVNVTVDYIRPASPATETVPAFSERTCATVTIGGINIAEALVSKGLAT 461 Query: 479 V 481 V Sbjct: 462 V 462
>YFI3_ECO57 (Q7BSX4) Putative endonuclease precursor (EC 3.1.-.-)| Length = 153 Score = 32.7 bits (73), Expect = 0.52 Identities = 34/105 (32%), Positives = 46/105 (43%), Gaps = 1/105 (0%) Frame = +2 Query: 170 LRGKVKAVTSGDCLLIMGSTKAEIPPEKSITLSYLMAPRLARRGGVDEPFAWESREFLRK 349 + G+V V GD + +M S KA I L + AP + G W S + ++ Sbjct: 21 IHGRVVRVLDGDTIEVMDSRKA-----VRIRLVNIDAPEKKQDYG-----RW-STDMMKS 69 Query: 350 LCVGKEVTFRVDYTAPNIGREIGTVYLGD-KNVAYLVVAAGWARV 481 L GK VT + GR +G VY D NV +V AG A V Sbjct: 70 LVAGKTVTVTY-FQRDRYGRMLGQVYAPDGMNVNQFMVRAGAAWV 113
>YFI3_ECOLI (Q99342) Putative endonuclease precursor (EC 3.1.-.-) (ORFA)| Length = 153 Score = 32.3 bits (72), Expect = 0.67 Identities = 34/105 (32%), Positives = 46/105 (43%), Gaps = 1/105 (0%) Frame = +2 Query: 170 LRGKVKAVTSGDCLLIMGSTKAEIPPEKSITLSYLMAPRLARRGGVDEPFAWESREFLRK 349 + G+V V GD + +M S KA I L + AP + G W S + ++ Sbjct: 21 IHGRVVRVLDGDTIEVMDSRKA-----VRIRLVNIDAPEKKQDYG-----RW-STDMMKS 69 Query: 350 LCVGKEVTFRVDYTAPNIGREIGTVYLGD-KNVAYLVVAAGWARV 481 L GK VT + GR +G VY D NV +V AG A V Sbjct: 70 LVAGKTVTVTY-FQRDRYGRILGQVYAPDGMNVNQFMVRAGAAWV 113
>Y38K_CORSE (Q39635) Hypothetical 38.1 kDa protein| Length = 338 Score = 31.6 bits (70), Expect = 1.2 Identities = 18/54 (33%), Positives = 28/54 (51%) Frame = +2 Query: 314 PFAWESREFLRKLCVGKEVTFRVDYTAPNIGREIGTVYLGDKNVAYLVVAAGWA 475 PF E++E L KL VGK +T + Y GR +G +Y + + ++ G A Sbjct: 240 PFGKEAKEELIKLVVGKCLTVHI-YEEDRYGRSVGDIYCNGQFIQEKMLKKGLA 292
>CARX_BACSU (P36838) Carbamoyl-phosphate synthase arginine-specific small chain| (EC 6.3.5.5) (Carbamoyl-phosphate synthetase glutamine chain) Length = 353 Score = 31.2 bits (69), Expect = 1.5 Identities = 15/52 (28%), Positives = 25/52 (48%) Frame = -2 Query: 451 VGNVLVAEVDSANFSPDVRSCVIHSECDLLSYAKFPQKLPAFPSKWLIDSTT 296 +GN + E D + P V++ V++ CD S+ + L + KW I T Sbjct: 57 IGNYGINEKDFESKKPQVKAAVVYEACDHFSHYEAVYSLKEYLQKWNIPLLT 108
>VG20_BPT4 (P13334) Structural protein of head (Tail tube protein Gp20)| Length = 524 Score = 30.4 bits (67), Expect = 2.6 Identities = 12/47 (25%), Positives = 26/47 (55%) Frame = -2 Query: 442 VLVAEVDSANFSPDVRSCVIHSECDLLSYAKFPQKLPAFPSKWLIDS 302 V+ +D + FSP +++ ++ D+L++ F +K +W +DS Sbjct: 108 VVALNLDKSKFSPKIKNMMLDEFSDVLNHLSFQRKGSDHFRRWYVDS 154
>GBLP_HYDAT (Q25189) Guanine nucleotide-binding protein beta subunit-like| protein (Receptor of activated protein kinase C) (RACK) Length = 317 Score = 30.0 bits (66), Expect = 3.3 Identities = 14/37 (37%), Positives = 22/37 (59%), Gaps = 2/37 (5%) Frame = +3 Query: 366 RSHSEWITQLLTSGEK--LALSTSATRTLPTWWLLQD 470 + H+ W+TQ+ T+ + L LS S +TL W L +D Sbjct: 11 KGHNGWVTQIATTPQNPDLILSASRDKTLIQWQLTRD 47
>MBD6_HUMAN (Q96DN6) Methyl-CpG-binding domain protein 6 (Methyl-CpG-binding| protein MBD6) Length = 1003 Score = 29.6 bits (65), Expect = 4.4 Identities = 35/111 (31%), Positives = 45/111 (40%), Gaps = 2/111 (1%) Frame = -3 Query: 348 FLRNSLLSQANGSSTPPRRA-SLGAIRYDRVMDFSGGISALVLPMMRRQSPEVTAFTLPL 172 FL +SLLS A + PP S R R S S+ + P RR T F L Sbjct: 318 FLASSLLSAAAKAQHPPLPPPSTLQGRRPRAQAPSASHSSSLRPSQRRPRRPPTVFRLLE 377 Query: 171 SH-PEAPVFDAMIAPWDWPAASGLRLPIRDPGEGVWPAG*SLLSRPDPDPN 22 P+ P AP P LP +P + + P+ SLL P P P+ Sbjct: 378 GRGPQTPRRSRPRAPA--PVPQPFSLP--EPSQPILPSVLSLLGLPTPGPS 424
>HISX_BRAJA (P59397) Histidinol dehydrogenase (EC 1.1.1.23) (HDH)| Length = 431 Score = 29.6 bits (65), Expect = 4.4 Identities = 18/65 (27%), Positives = 30/65 (46%), Gaps = 4/65 (6%) Frame = +2 Query: 110 LAAGQSQGAIMASNTGASGWLRGKVKAV----TSGDCLLIMGSTKAEIPPEKSITLSYLM 277 + AG S+ ++A +TG + W+ + A TS +LI S + EK++ Sbjct: 232 MIAGPSEVLVIADDTGNADWIAADLLAQAEHDTSAQSILITDSARLAADVEKAVEAQLKT 291 Query: 278 APRLA 292 PR A Sbjct: 292 LPRTA 296
>GBLP_BRARE (O42248) Guanine nucleotide-binding protein beta subunit 2-like 1| (Receptor of activated protein kinase C) (RACK) Length = 317 Score = 28.9 bits (63), Expect = 7.5 Identities = 13/37 (35%), Positives = 22/37 (59%), Gaps = 2/37 (5%) Frame = +3 Query: 366 RSHSEWITQLLTSGE--KLALSTSATRTLPTWWLLQD 470 + HS W+TQ+ T+ + + LS S +T+ W L +D Sbjct: 12 KGHSGWVTQIATTPQFPDMILSASRDKTIIMWKLTRD 48
>HCN4_RABIT (Q9TV66) Potassium/sodium hyperpolarization-activated cyclic| nucleotide-gated channel 4 (Hyperpolarization-activated cation channel 4) (HAC-4) Length = 1175 Score = 28.9 bits (63), Expect = 7.5 Identities = 16/40 (40%), Positives = 21/40 (52%), Gaps = 2/40 (5%) Frame = +2 Query: 113 AAG--QSQGAIMASNTGASGWLRGKVKAVTSGDCLLIMGS 226 AAG +S+GA + G RG K+ T+GDC GS Sbjct: 66 AAGGAESRGAALGGAADGEGPARGAAKSSTNGDCRRFRGS 105
>DISA_VIPLE (P83253) Disintegrin lebein-alpha (Platelet aggregation activation| inhibitor) Length = 64 Score = 28.5 bits (62), Expect = 9.7 Identities = 10/16 (62%), Positives = 11/16 (68%) Frame = +1 Query: 421 CLPRRQERCLLGGCCR 468 C PRR E C+ G CCR Sbjct: 12 CKPRRGEHCVSGPCCR 27
>KAPR_USTMA (P49605) cAMP-dependent protein kinase regulatory subunit (PKA| regulatory subunit) Length = 522 Score = 28.5 bits (62), Expect = 9.7 Identities = 25/76 (32%), Positives = 36/76 (47%), Gaps = 4/76 (5%) Frame = -3 Query: 321 ANGSSTPPRRASLGAIRYDRVMDFSGG----ISALVLPMMRRQSPEVTAFTLPLSHPEAP 154 A G ++P +RASL D +GG +++L +PM QSP+ T + P AP Sbjct: 78 APGLASPTQRASL--FHSDPFAPGAGGGALPVASLAVPMDASQSPDSTPAPATPAAPAAP 135 Query: 153 VFDAMIAPWDWPAASG 106 A AP+ SG Sbjct: 136 A--APAAPFSSLGGSG 149
>RIBD2_BUCAI (P57534) 5-amino-6-(5-phosphoribosylamino)uracil reductase (EC| 1.1.1.193) (HTP reductase) Length = 207 Score = 28.5 bits (62), Expect = 9.7 Identities = 15/48 (31%), Positives = 25/48 (52%) Frame = -2 Query: 388 VIHSECDLLSYAKFPQKLPAFPSKWLIDSTTTSQPWGHKV*QSDGLLW 245 V + E D + + FP K+ P + +IDS QP H + ++ G +W Sbjct: 44 VRYKELDKKTLSIFPNKIFQHPIRVIIDSKNRVQP-SHNIIKTKGKIW 90 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 70,601,227 Number of Sequences: 219361 Number of extensions: 1501754 Number of successful extensions: 4152 Number of sequences better than 10.0: 18 Number of HSP's better than 10.0 without gapping: 4046 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4145 length of database: 80,573,946 effective HSP length: 103 effective length of database: 57,979,763 effective search space used: 3304846491 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
