ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl08f04
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ref|XM_483534.1| Oryza sativa (japonica cultivar-group), mRNA 50 0.007
2ref|XM_483533.1| Oryza sativa (japonica cultivar-group), mRNA 50 0.007
3ref|XM_483532.1| Oryza sativa (japonica cultivar-group), mRNA 50 0.007
4dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 50 0.007
5dbj|AP005439.3| Oryza sativa (japonica cultivar-group) genomic D... 50 0.007
6dbj|AP004464.3| Oryza sativa (japonica cultivar-group) genomic D... 50 0.007
7dbj|AK102567.1| Oryza sativa (japonica cultivar-group) cDNA clon... 50 0.007
8dbj|AK099654.1| Oryza sativa (japonica cultivar-group) cDNA clon... 50 0.007
9dbj|AK067265.1| Oryza sativa (japonica cultivar-group) cDNA clon... 50 0.007
10gb|CP000159.1| Salinibacter ruber DSM 13855, complete genome 42 1.6
11ref|XM_517624.1| PREDICTED: Pan troglodytes similar to adenylate... 40 6.5
12gb|AC007418.9| Drosophila melanogaster clone BACR16P22, complete... 40 6.5
13emb|CR749634.1| Homo sapiens mRNA; cDNA DKFZp686J099 (from clone... 40 6.5
14gb|AC118563.1| Homo sapiens chromosome 5 clone CTD-2243F8, compl... 40 6.5
15gb|M31129.1|DROGPAD Drosophila melanogaster G protein alpha subu... 40 6.5
16gb|AC008189.3|AC008189 Drosophila melanogaster, chromosome 3R, r... 40 6.5
17gb|AC007398.6|AC007398 Drosophila melanogaster, chromosome 2R, r... 40 6.5
18gb|AC010346.6|AC010346 Homo sapiens chromosome 5 clone CITB-H1_2... 40 6.5
19emb|CT009703.8| Zebrafish DNA sequence from clone DKEYP-32B7 in ... 40 6.5
20gb|AE003829.4| Drosophila melanogaster chromosome 2R, section 21... 40 6.5
21gb|AF082183.1|AF082183 Streptococcus mutans ABC transporter MutF... 40 6.5
22gb|AE003605.3| Drosophila melanogaster chromosome 3R, section 3 ... 40 6.5

>ref|XM_483534.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 3488

 Score = 50.1 bits (25), Expect = 0.007
 Identities = 28/29 (96%)
 Strand = Plus / Plus

                                        
Query: 452 tcctaggtccctggttgcttgctcaggct 480
           |||||||| ||||||||||||||||||||
Sbjct: 416 tcctaggttcctggttgcttgctcaggct 444



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>ref|XM_483533.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2860

 Score = 50.1 bits (25), Expect = 0.007
 Identities = 28/29 (96%)
 Strand = Plus / Plus

                                        
Query: 452 tcctaggtccctggttgcttgctcaggct 480
           |||||||| ||||||||||||||||||||
Sbjct: 414 tcctaggttcctggttgcttgctcaggct 442



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>ref|XM_483532.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 3006

 Score = 50.1 bits (25), Expect = 0.007
 Identities = 28/29 (96%)
 Strand = Plus / Plus

                                        
Query: 452 tcctaggtccctggttgcttgctcaggct 480
           |||||||| ||||||||||||||||||||
Sbjct: 414 tcctaggttcctggttgcttgctcaggct 442



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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
                sequence
          Length = 28434780

 Score = 50.1 bits (25), Expect = 0.007
 Identities = 28/29 (96%)
 Strand = Plus / Plus

                                             
Query: 452      tcctaggtccctggttgcttgctcaggct 480
                |||||||| ||||||||||||||||||||
Sbjct: 26779616 tcctaggttcctggttgcttgctcaggct 26779644



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>dbj|AP005439.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
              clone:OSJNBa0033D24
          Length = 186132

 Score = 50.1 bits (25), Expect = 0.007
 Identities = 28/29 (96%)
 Strand = Plus / Plus

                                           
Query: 452    tcctaggtccctggttgcttgctcaggct 480
              |||||||| ||||||||||||||||||||
Sbjct: 122958 tcctaggttcctggttgcttgctcaggct 122986



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>dbj|AP004464.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
             clone:P0665C04
          Length = 177054

 Score = 50.1 bits (25), Expect = 0.007
 Identities = 28/29 (96%)
 Strand = Plus / Plus

                                          
Query: 452   tcctaggtccctggttgcttgctcaggct 480
             |||||||| ||||||||||||||||||||
Sbjct: 42406 tcctaggttcctggttgcttgctcaggct 42434



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>dbj|AK102567.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033097K24, full
           insert sequence
          Length = 3006

 Score = 50.1 bits (25), Expect = 0.007
 Identities = 28/29 (96%)
 Strand = Plus / Plus

                                        
Query: 452 tcctaggtccctggttgcttgctcaggct 480
           |||||||| ||||||||||||||||||||
Sbjct: 414 tcctaggttcctggttgcttgctcaggct 442



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>dbj|AK099654.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013066A21, full
           insert sequence
          Length = 3488

 Score = 50.1 bits (25), Expect = 0.007
 Identities = 28/29 (96%)
 Strand = Plus / Plus

                                        
Query: 452 tcctaggtccctggttgcttgctcaggct 480
           |||||||| ||||||||||||||||||||
Sbjct: 416 tcctaggttcctggttgcttgctcaggct 444



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>dbj|AK067265.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013095D09, full
           insert sequence
          Length = 2861

 Score = 50.1 bits (25), Expect = 0.007
 Identities = 28/29 (96%)
 Strand = Plus / Plus

                                        
Query: 452 tcctaggtccctggttgcttgctcaggct 480
           |||||||| ||||||||||||||||||||
Sbjct: 415 tcctaggttcctggttgcttgctcaggct 443



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>gb|CP000159.1| Salinibacter ruber DSM 13855, complete genome
          Length = 3551823

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 248     ttcggcggaggtggacgtcga 268
               |||||||||||||||||||||
Sbjct: 1708598 ttcggcggaggtggacgtcga 1708618



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>ref|XM_517624.1| PREDICTED: Pan troglodytes similar to adenylate cyclase 2; ATP
            pyrophosphate-lyase; type II adenylate cyclase;
            3,5-cyclic AMP synthetase; adenylyl cyclase 2; adenylate
            cyclase II (LOC461715), mRNA
          Length = 3597

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 61   atccagatgctgccgctgct 80
            ||||||||||||||||||||
Sbjct: 2001 atccagatgctgccgctgct 1982



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>gb|AC007418.9| Drosophila melanogaster clone BACR16P22, complete sequence
          Length = 179325

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 68    tgctgccgctgctactaact 87
             ||||||||||||||||||||
Sbjct: 16768 tgctgccgctgctactaact 16787



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>emb|CR749634.1| Homo sapiens mRNA; cDNA DKFZp686J099 (from clone DKFZp686J099)
          Length = 9825

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 61   atccagatgctgccgctgct 80
            ||||||||||||||||||||
Sbjct: 8451 atccagatgctgccgctgct 8432



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>gb|AC118563.1| Homo sapiens chromosome 5 clone CTD-2243F8, complete sequence
          Length = 105027

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 61    atccagatgctgccgctgct 80
             ||||||||||||||||||||
Sbjct: 56796 atccagatgctgccgctgct 56777



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>gb|M31129.1|DROGPAD Drosophila melanogaster G protein alpha subunit gene, partial cds
          Length = 1889

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 68  tgctgccgctgctactaact 87
           ||||||||||||||||||||
Sbjct: 192 tgctgccgctgctactaact 211



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>gb|AC008189.3|AC008189 Drosophila melanogaster, chromosome 3R, region 82C-82D, BAC clone
             BACR02C19, complete sequence
          Length = 188359

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 24    caaaagcgaaaccaaaacag 43
             ||||||||||||||||||||
Sbjct: 66225 caaaagcgaaaccaaaacag 66244



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>gb|AC007398.6|AC007398 Drosophila melanogaster, chromosome 2R, region 47A-47B, BAC clone
              BACR20O22, complete sequence
          Length = 168567

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 68     tgctgccgctgctactaact 87
              ||||||||||||||||||||
Sbjct: 117508 tgctgccgctgctactaact 117527



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>gb|AC010346.6|AC010346 Homo sapiens chromosome 5 clone CITB-H1_2018B2, complete sequence
          Length = 109626

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 61    atccagatgctgccgctgct 80
             ||||||||||||||||||||
Sbjct: 12699 atccagatgctgccgctgct 12680



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>emb|CT009703.8| Zebrafish DNA sequence from clone DKEYP-32B7 in linkage group 12,
             complete sequence
          Length = 129251

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 106   ccagaaaatatcatttctag 125
             ||||||||||||||||||||
Sbjct: 76235 ccagaaaatatcatttctag 76254



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>gb|AE003829.4| Drosophila melanogaster chromosome 2R, section 21 of 73 of the complete
             sequence
          Length = 281782

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 68    tgctgccgctgctactaact 87
             ||||||||||||||||||||
Sbjct: 96412 tgctgccgctgctactaact 96431



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>gb|AF082183.1|AF082183 Streptococcus mutans ABC transporter MutF (mutF), membrane spanning
            protein MutE (mutE), and membrane protein MutG (mutG)
            genes, complete cds; and fructose bi-phosphate aldolase
            (fba) gene, partial cds
          Length = 3398

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 108  agaaaatatcatttctagcg 127
            ||||||||||||||||||||
Sbjct: 2378 agaaaatatcatttctagcg 2397



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>gb|AE003605.3| Drosophila melanogaster chromosome 3R, section 3 of 118 of the complete
              sequence
          Length = 273418

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 24     caaaagcgaaaccaaaacag 43
              ||||||||||||||||||||
Sbjct: 153126 caaaagcgaaaccaaaacag 153145


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,241,201
Number of Sequences: 3902068
Number of extensions: 3241201
Number of successful extensions: 51615
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 51543
Number of HSP's gapped (non-prelim): 72
length of query: 480
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 458
effective length of database: 17,147,199,772
effective search space: 7853417495576
effective search space used: 7853417495576
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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