>RPA1_TRYBB (P16355) DNA-directed RNA polymerase I largest subunit (EC 2.7.7.6)|
          Length = 1744

 Score = 30.8 bits (68), Expect = 1.5
 Identities = 16/45 (35%), Positives = 23/45 (51%)
 Frame = -1

Query: 236  IHEEDPEKDGIGGGDTRNPQRLAGSRRTGAREQC*RISADPEVAD 102
            +H +  +  GI G DT  PQR  GS  +G  +     ++D E AD
Sbjct: 1411 LHSDGTDTRGIAGSDTGGPQRRRGSVESGRGDD----ASDSEAAD 1451

>PEX6_PENCH (Q9HG03) Peroxisomal biogenesis factor 6 (Peroxin-6)|
          Length = 1459

 Score = 30.0 bits (66), Expect = 2.6
 Identities = 19/54 (35%), Positives = 25/54 (46%)
 Frame = +2

Query: 11  LGFLPRRKPERSIHEGGDRRRGAAPACRSGGRPPQDLLKSFSIAPLLLFSDSRP 172
           L  LP  KP  +I+  G+RR   +       RPP  L  S  + PLLL +   P
Sbjct: 501 LSGLPSSKPRYAINHSGERRPSISQ------RPPTRLTPSVFVPPLLLGNIENP 548

>NEB1_HUMAN (Q9ULJ8) Neurabin-1 (Neurabin-I) (Neural tissue-specific F-actin|
           binding protein I) (Protein phosphatase 1 regulatory
           subunit 9A)
          Length = 1098

 Score = 29.6 bits (65), Expect = 3.4
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = +2

Query: 26  RRKPERSIHEGGDRRRGAAPACRSGGRPPQD 118
           R+  ERS+HE G   R +    ++GG  PQD
Sbjct: 143 RKMFERSVHESGQNNRYSPKKEKAGGSEPQD 173

>IDI2_METKA (Q8TX99) Isopentenyl-diphosphate delta-isomerase (EC 5.3.3.2) (IPP|
           isomerase) (Isopentenyl pyrophosphate isomerase)
          Length = 365

 Score = 28.9 bits (63), Expect = 5.8
 Identities = 18/44 (40%), Positives = 28/44 (63%)
 Frame = +3

Query: 285 VESDLA*IVDCKAILGNQSLLAVSFFLSDPE*ELFGSRLSFKMM 416
           VES+ + + DC  I+ +++L  + F   D E ELFG RLSF ++
Sbjct: 17  VESEESPLFDCVKIV-HRALPELDFDDVDMEIELFGKRLSFPLI 59

>SYTL2_HUMAN (Q9HCH5) Synaptotagmin-like protein 2 (Exophilin-4)|
          Length = 895

 Score = 28.9 bits (63), Expect = 5.8
 Identities = 16/52 (30%), Positives = 26/52 (50%)
 Frame = -1

Query: 329 QNGFAINNSGKVAFNRTFREKILHQIPACDLIHEEDPEKDGIGGGDTRNPQR 174
           +N   IN     +   T  E +L + PA +L H  +PE   + GG +R+ Q+
Sbjct: 420 ENSPTINEPKDKSSELTRLESVLPRSPADELSHCVEPEPSQVPGGSSRDRQQ 471

>AGUA_ERWCT (Q6CZ80) Putative agmatine deiminase (EC 3.5.3.12) (Agmatine|
           iminohydrolase)
          Length = 368

 Score = 28.5 bits (62), Expect = 7.6
 Identities = 16/43 (37%), Positives = 23/43 (53%)
 Frame = -1

Query: 275 REKILHQIPACDLIHEEDPEKDGIGGGDTRNPQRLAGSRRTGA 147
           RE  + ++PA   +H    E  G+  GD    +RLAGSR  G+
Sbjct: 265 RELKIWKLPAPGPLHATKEEAQGVDSGDA--VERLAGSRLAGS 305

>OTRA_STRRM (Q55002) Oxytetracycline resistance protein|
          Length = 663

 Score = 28.5 bits (62), Expect = 7.6
 Identities = 15/37 (40%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
 Frame = -2

Query: 235 FTRRIPKRTESEGEILAIRRGW-PGVGEQEQGSNAEG 128
           F +R+P  T+ EG  LA  RG+ P VG+       EG
Sbjct: 610 FNQRVPGLTQGEGVFLAEHRGYRPAVGQPPVRPRPEG 646

>PRPP_HUMAN (P81489) Salivary proline-rich protein II-1 (Fragment)|
          Length = 174

 Score = 28.1 bits (61), Expect = 9.9
 Identities = 16/37 (43%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
 Frame = +2

Query: 23  PRRKPERSIHEGGDRRRGAAP-ACRSGGRPPQDLLKS 130
           P  KPER   +GGD+ +G  P   +  G PPQ+  KS
Sbjct: 134 PPGKPERPPPQGGDQSQGPPPHPGKPEGPPPQEGNKS 170

>KCNH2_HUMAN (Q12809) Potassium voltage-gated channel subfamily H member 2|
            (Voltage-gated potassium channel subunit Kv11.1)
            (Ether-a-go-go related gene potassium channel 1) (H-ERG)
            (Erg1) (Ether-a-go-go related protein 1) (Eag-related
            protein 1) (eag homo
          Length = 1159

 Score = 28.1 bits (61), Expect = 9.9
 Identities = 15/41 (36%), Positives = 20/41 (48%)
 Frame = -2

Query: 265  FSTRFQHAT*FTRRIPKRTESEGEILAIRRGWPGVGEQEQG 143
            FS + +    F RR  K TE  GE+ A+  G  G G   +G
Sbjct: 881  FSRQRKRKLSFRRRTDKDTEQPGEVSALGPGRAGAGPSSRG 921

>ITB5_HUMAN (P18084) Integrin beta-5 precursor|
          Length = 799

 Score = 28.1 bits (61), Expect = 9.9
 Identities = 19/46 (41%), Positives = 26/46 (56%)
 Frame = +2

Query: 290 KRPCLNC*LQSHSGESVIVSCIFLPFRP*VGIVWFKTVIQDDAEAI 427
           KR C+ C L  HSG+    +C  L  R  V I W  T+++DD EA+
Sbjct: 638 KRDCVEC-LLLHSGKPDNQTCHSL-CRDEV-ITWVDTIVKDDQEAV 680


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 66,833,261
Number of Sequences: 219361
Number of extensions: 1395883
Number of successful extensions: 3991
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3821
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3987
length of database: 80,573,946
effective HSP length: 101
effective length of database: 58,418,485
effective search space used: 2570413340
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)