ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | bastl08e11 |
|---|---|
| Clone Library Name | barley_pub |
>DB10_NICSY (P46942) ATP-dependent RNA helicase-like protein DB10 (EC 3.6.1.-)| Length = 607 Score = 90.1 bits (222), Expect = 2e-18 Identities = 35/51 (68%), Positives = 44/51 (86%) Frame = +2 Query: 116 AAAMSGTAAPRYAPDDPTVPKPWRGLVDGTTGYLYYWNPETNVTQYEKPVP 268 A + +A P YAP+DPT+PKPW+GLVDGTTG++Y+WNPETN TQYE+PVP Sbjct: 2 AVVTASSAGPSYAPEDPTLPKPWKGLVDGTTGFIYFWNPETNDTQYERPVP 52
>ZYS3_CHLRE (Q8GSP8) Zygote-specific protein 3 precursor| Length = 371 Score = 38.9 bits (89), Expect = 0.006 Identities = 18/43 (41%), Positives = 23/43 (53%) Frame = +2 Query: 134 TAAPRYAPDDPTVPKPWRGLVDGTTGYLYYWNPETNVTQYEKP 262 TA Y DP PWR LVD +G +++N ET T +E P Sbjct: 271 TATREYVYTDPAYATPWRELVDEASGAPFFFNVETGDTTWELP 313
>APBB2_HUMAN (Q92870) Amyloid beta A4 precursor protein-binding family B member| 2 (Fe65-like protein) Length = 758 Score = 33.9 bits (76), Expect = 0.18 Identities = 18/43 (41%), Positives = 24/43 (55%), Gaps = 2/43 (4%) Frame = +2 Query: 161 DPTVPKPWRGLVD--GTTGYLYYWNPETNVTQYEKPVPPEAQL 283 DP +P W+ + D GT YYW+ T TQ+E+PV A L Sbjct: 289 DPDLPPGWKRVSDIAGT----YYWHIPTGTTQWERPVSIPADL 327
>APBB2_MOUSE (Q9DBR4) Amyloid beta A4 precursor protein-binding family B member| 2 Length = 760 Score = 33.5 bits (75), Expect = 0.24 Identities = 18/43 (41%), Positives = 24/43 (55%), Gaps = 2/43 (4%) Frame = +2 Query: 161 DPTVPKPWRGLVD--GTTGYLYYWNPETNVTQYEKPVPPEAQL 283 DP +P W+ + D GT YYW+ T TQ+E+PV A L Sbjct: 289 DPDLPPGWKRVNDIAGT----YYWHIPTGTTQWERPVSIPADL 327
>PIN1_MOUSE (Q9QUR7) Peptidyl-prolyl cis-trans isomerase NIMA-interacting 1 (EC| 5.2.1.8) (Rotamase Pin1) (PPIase Pin1) Length = 165 Score = 32.7 bits (73), Expect = 0.41 Identities = 12/35 (34%), Positives = 22/35 (62%) Frame = +2 Query: 158 DDPTVPKPWRGLVDGTTGYLYYWNPETNVTQYEKP 262 D+ +P W + ++G +YY+N TN +Q+E+P Sbjct: 3 DEEKLPPGWEKRMSRSSGRVYYFNHITNASQWERP 37
>PIN1_HUMAN (Q13526) Peptidyl-prolyl cis-trans isomerase NIMA-interacting 1 (EC| 5.2.1.8) (Rotamase Pin1) (PPIase Pin1) Length = 163 Score = 32.7 bits (73), Expect = 0.41 Identities = 12/35 (34%), Positives = 22/35 (62%) Frame = +2 Query: 158 DDPTVPKPWRGLVDGTTGYLYYWNPETNVTQYEKP 262 D+ +P W + ++G +YY+N TN +Q+E+P Sbjct: 3 DEEKLPPGWEKRMSRSSGRVYYFNHITNASQWERP 37
>WBP4_CHICK (Q5F457) WW domain-binding protein 4 (WBP-4)| Length = 398 Score = 32.0 bits (71), Expect = 0.70 Identities = 16/33 (48%), Positives = 21/33 (63%), Gaps = 1/33 (3%) Frame = +2 Query: 167 TVPKPW-RGLVDGTTGYLYYWNPETNVTQYEKP 262 T PK W +GL GY YY+N +T +Q+EKP Sbjct: 135 TEPKEWVQGL--SPEGYTYYYNTKTGESQWEKP 165
>DOD_DROME (P54353) Protein dodo| Length = 166 Score = 31.2 bits (69), Expect = 1.2 Identities = 13/39 (33%), Positives = 19/39 (48%) Frame = +2 Query: 155 PDDPTVPKPWRGLVDGTTGYLYYWNPETNVTQYEKPVPP 271 PD +P W +TG YY N T +Q+++P P Sbjct: 2 PDAEQLPDGWEKRTSRSTGMSYYLNMYTKESQWDQPTEP 40
>PINL_HUMAN (O15428) PIN1-like protein| Length = 100 Score = 29.3 bits (64), Expect = 4.5 Identities = 12/35 (34%), Positives = 20/35 (57%) Frame = +2 Query: 158 DDPTVPKPWRGLVDGTTGYLYYWNPETNVTQYEKP 262 D+ +P W + +G YY+N TN +Q+E+P Sbjct: 3 DEEKLPPGWEKRMSRPSGRGYYFNHITNPSQWERP 37
>NUDH_METCA (Q606D2) Probable (di)nucleoside polyphosphate hydrolase (EC| 3.6.1.-) Length = 191 Score = 28.9 bits (63), Expect = 5.9 Identities = 17/37 (45%), Positives = 22/37 (59%), Gaps = 1/37 (2%) Frame = +1 Query: 148 VRAGRPYGAQAVARAGGRHHR-LPLLLESGDQRHSVR 255 ++AGRP GAQAV+ AGG R +P+ E S R Sbjct: 155 LQAGRPAGAQAVSDAGGTATRQIPVATEPSGPSSSQR 191
>LFY_ARATH (Q00958) LEAFY protein| Length = 424 Score = 28.9 bits (63), Expect = 5.9 Identities = 12/28 (42%), Positives = 15/28 (53%) Frame = +2 Query: 197 DGTTGYLYYWNPETNVTQYEKPVPPEAQ 280 +G T L+ WNP + Q PVPP Q Sbjct: 4 EGFTSGLFRWNPTRALVQAPPPVPPPLQ 31
>NEDD4_RAT (Q62940) E3 ubiquitin-protein ligase NEDD4 (EC 6.3.2.-)| Length = 887 Score = 28.9 bits (63), Expect = 5.9 Identities = 13/43 (30%), Positives = 22/43 (51%) Frame = +2 Query: 146 RYAPDDPTVPKPWRGLVDGTTGYLYYWNPETNVTQYEKPVPPE 274 ++ P+ +P W D G YY N E+ TQ+++P P + Sbjct: 240 QHPPEPSPLPPGWEERQD-VLGRTYYVNHESRTTQWKRPSPED 281
>HRCQA_PSESY (Q52374) Type III secretion protein hrcQa| Length = 238 Score = 28.5 bits (62), Expect = 7.7 Identities = 20/56 (35%), Positives = 27/56 (48%) Frame = +1 Query: 91 GD*VLPQICRSDVWNRGPTVRAGRPYGAQAVARAGGRHHRLPLLLESGDQRHSVRE 258 GD VLP CR D +G AGR + A+ +A +H L L+ + HS E Sbjct: 188 GDVVLPARCRFDSAGQGSVTLAGRQWAARTDQQA--QH----LFLQLSHEEHSHHE 237
>WBP4_MOUSE (Q61048) WW domain-binding protein 4 (WBP-4) (Formin-binding| protein 21) Length = 376 Score = 28.5 bits (62), Expect = 7.7 Identities = 10/18 (55%), Positives = 14/18 (77%) Frame = +2 Query: 209 GYLYYWNPETNVTQYEKP 262 GY YY+N ET +++EKP Sbjct: 178 GYTYYYNTETGESKWEKP 195
>DCMA_MOOTH (P27988) Carbon monoxide dehydrogenase/acetyl CoA synthase alpha| subunit (EC 2.3.1.169) (Acetyl CoA synthase subunit) (CODH/ACS) (ACS subunit) Length = 729 Score = 28.5 bits (62), Expect = 7.7 Identities = 8/17 (47%), Positives = 12/17 (70%) Frame = +2 Query: 146 RYAPDDPTVPKPWRGLV 196 +Y PD+P +P PW G + Sbjct: 120 KYKPDEPLLPPPWTGFI 136
>WBP4_RAT (Q5HZF2) WW domain-binding protein 4 (WBP-4)| Length = 374 Score = 28.5 bits (62), Expect = 7.7 Identities = 10/18 (55%), Positives = 14/18 (77%) Frame = +2 Query: 209 GYLYYWNPETNVTQYEKP 262 GY YY+N ET +++EKP Sbjct: 176 GYTYYYNTETGESKWEKP 193
>SLOU_DROME (P22807) Homeobox protein slou (S59/2) (Protein slouch) (Homeobox| protein NK-1) Length = 659 Score = 28.5 bits (62), Expect = 7.7 Identities = 15/37 (40%), Positives = 21/37 (56%) Frame = +3 Query: 135 PRPHGTRRTTLRCPSRGAGWWTAPPATSTTGIRRPTS 245 P PH + LR PS + TAPP+ +T+ + PTS Sbjct: 230 PHPHPSAVFHLRAPSSSS---TAPPSPATSPLSPPTS 263 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 34,057,748 Number of Sequences: 219361 Number of extensions: 572394 Number of successful extensions: 2395 Number of sequences better than 10.0: 17 Number of HSP's better than 10.0 without gapping: 2301 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2393 length of database: 80,573,946 effective HSP length: 102 effective length of database: 58,199,124 effective search space used: 2618960580 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
