ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl08e09
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, co... 44 0.39
2gb|AC023678.4| Drosophila melanogaster 3L BAC RP98-14K14 (Roswel... 42 1.5
3dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.5
4gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome 42 1.5
5dbj|AP005453.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.5
6gb|AE003542.3| Drosophila melanogaster chromosome 3L, section 43... 42 1.5
7ref|XM_426688.1| PREDICTED: Gallus gallus similar to CDNA sequen... 40 6.1
8gb|AE004111.1| Vibrio cholerae O1 biovar eltor str. N16961 chrom... 40 6.1
9emb|AL034422.24|HS1141E15 Human DNA sequence from clone RP5-1141... 40 6.1
10emb|CR555306.1| Azoarcus sp. EbN1 complete genome 40 6.1
11emb|AJ278573.1|SNA278573 Streptomyces natalensis pimaricin biosy... 40 6.1
12gb|AF416331.1| Ruegeria sp. PR1b plasmid pSD25, complete sequence 40 6.1
13ref|NM_009293.1| Mus musculus steroid sulfatase (Sts), mRNA 40 6.1
14dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.1
15dbj|AB124921.1| Uncultured sulfate-reducing bacterium DsrA, DsrB... 40 6.1
16gb|AC017079.5| Homo sapiens BAC clone RP11-462M9 from 2, complet... 40 6.1
17gb|AF272983.1|AF272983 Homo sapiens SRC tyrosine kinase gene, ex... 40 6.1
18emb|BX932975.1| Gallus gallus finished cDNA, clone ChEST38b17 40 6.1
19dbj|AP005894.3| Oryza sativa (japonica cultivar-group) genomic D... 40 6.1
20dbj|AP005583.3| Oryza sativa (japonica cultivar-group) genomic D... 40 6.1
21dbj|AK109426.2| Oryza sativa (japonica cultivar-group) cDNA clon... 40 6.1
22dbj|AK073545.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 6.1
23gb|U37545.1|MMU37545 Mus musculus steroid sulfatase (Sts) mRNA, ... 40 6.1

>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome
          Length = 9025608

 Score = 44.1 bits (22), Expect = 0.39
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                         
Query: 391     cctcctcgtcaacgccgccggggcgc 416
               ||||||||||||||||||||| ||||
Sbjct: 1961138 cctcctcgtcaacgccgccggagcgc 1961113



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>gb|AC023678.4| Drosophila melanogaster 3L BAC RP98-14K14 (Roswell Park Cancer
             Institute Drosophila BAC Library) complete sequence
          Length = 186990

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 12    ccagccgcagtcggtcggcag 32
             |||||||||||||||||||||
Sbjct: 18642 ccagccgcagtcggtcggcag 18622



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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
                sequence
          Length = 30731886

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                     
Query: 1        atccatccattccagccgcag 21
                |||||||||||||||||||||
Sbjct: 26196185 atccatccattccagccgcag 26196165



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>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome
          Length = 5013479

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 272     cgcttcgccgtctgggtcgcc 292
               |||||||||||||||||||||
Sbjct: 4375811 cgcttcgccgtctgggtcgcc 4375791



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>dbj|AP005453.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
             clone:P0453H04
          Length = 175047

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 1     atccatccattccagccgcag 21
             |||||||||||||||||||||
Sbjct: 60725 atccatccattccagccgcag 60705



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>gb|AE003542.3| Drosophila melanogaster chromosome 3L, section 43 of 83 of the complete
              sequence
          Length = 303022

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 12     ccagccgcagtcggtcggcag 32
              |||||||||||||||||||||
Sbjct: 168474 ccagccgcagtcggtcggcag 168494



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>ref|XM_426688.1| PREDICTED: Gallus gallus similar to CDNA sequence BC026799
            (LOC429132), mRNA
          Length = 1446

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 222  gcatggccgccggcttcgtggcga 245
            ||||||||||| ||||||||||||
Sbjct: 1033 gcatggccgcccgcttcgtggcga 1010



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>gb|AE004111.1| Vibrio cholerae O1 biovar eltor str. N16961 chromosome I, section 19
            of 251 of the complete chromosome
          Length = 10191

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 425  gccggggccagcagcaccaa 444
            ||||||||||||||||||||
Sbjct: 7095 gccggggccagcagcaccaa 7114



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>emb|AL034422.24|HS1141E15 Human DNA sequence from clone RP5-1141E15 on chromosome 20q11.23-12
             Contains the 5' end of GHRH gene for growth hormone
             releasing hormone, the MANBAL gene for mannosidase beta A
             lysosomal-like, the 5' end of the SRC gene for v-src avian
             sarcoma (Schmidt-Ruppin A-2) viral oncogene homolog and a
             CpG island, complete sequence
          Length = 113681

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 410   ggggcgctcacctgggccgg 429
             ||||||||||||||||||||
Sbjct: 85628 ggggcgctcacctgggccgg 85609



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>emb|CR555306.1| Azoarcus sp. EbN1 complete genome
          Length = 4296230

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 214     gagccgcggcatggccgccggctt 237
               |||||||||||||| |||||||||
Sbjct: 4292189 gagccgcggcatgggcgccggctt 4292212



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>emb|AJ278573.1|SNA278573 Streptomyces natalensis pimaricin biosynthetic gene cluster
          Length = 84985

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 358   cggcgtcgccctcgaggccgacgg 381
             ||||||||||| ||||||||||||
Sbjct: 23031 cggcgtcgcccacgaggccgacgg 23008



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>gb|AF416331.1| Ruegeria sp. PR1b plasmid pSD25, complete sequence
          Length = 148650

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 431   gccagcagcaccaacgccac 450
             ||||||||||||||||||||
Sbjct: 93625 gccagcagcaccaacgccac 93606



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>ref|NM_009293.1| Mus musculus steroid sulfatase (Sts), mRNA
          Length = 2283

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                       
Query: 221 ggcatggccgccggcttcgtggcgacgg 248
           |||||||||| ||||| |||||||||||
Sbjct: 260 ggcatggccggcggctgcgtggcgacgg 233



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>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
               sequence
          Length = 22696651

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 355     cgacggcgtcgccctcgaggccga 378
               |||||||| |||||||||||||||
Sbjct: 2463603 cgacggcggcgccctcgaggccga 2463626



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>dbj|AB124921.1| Uncultured sulfate-reducing bacterium DsrA, DsrB genes for
            dissimilatory sulfite reductase alpha and beta subunit,
            partial cds, clone:NBC-7
          Length = 1855

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 364  cgccctcgaggccgacggca 383
            ||||||||||||||||||||
Sbjct: 1453 cgccctcgaggccgacggca 1472



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>gb|AC017079.5| Homo sapiens BAC clone RP11-462M9 from 2, complete sequence
          Length = 176075

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 403    cgccgccggggcgctcacctgggc 426
              ||||||| ||||||||||||||||
Sbjct: 164533 cgccgcccgggcgctcacctgggc 164556



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>gb|AF272983.1|AF272983 Homo sapiens SRC tyrosine kinase gene, exons 1alpha and 1a,
            alternatively spliced
          Length = 4688

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 410  ggggcgctcacctgggccgg 429
            ||||||||||||||||||||
Sbjct: 4407 ggggcgctcacctgggccgg 4388



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>emb|BX932975.1| Gallus gallus finished cDNA, clone ChEST38b17
          Length = 813

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 222 gcatggccgccggcttcgtggcga 245
           ||||||||||| ||||||||||||
Sbjct: 453 gcatggccgcccgcttcgtggcga 430



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>dbj|AP005894.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC
              clone:OSJNBa0095O23
          Length = 159792

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 355    cgacggcgtcgccctcgaggccga 378
              |||||||| |||||||||||||||
Sbjct: 142013 cgacggcggcgccctcgaggccga 142036



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>dbj|AP005583.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC
             clone:P0406E03
          Length = 201069

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 355   cgacggcgtcgccctcgaggccga 378
             |||||||| |||||||||||||||
Sbjct: 50193 cgacggcggcgccctcgaggccga 50216



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>dbj|AK109426.2| Oryza sativa (japonica cultivar-group) cDNA clone:006-306-E02, full
           insert sequence
          Length = 1013

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 355 cgacggcgtcgccctcgaggccga 378
           |||||||| |||||||||||||||
Sbjct: 199 cgacggcggcgccctcgaggccga 176



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>dbj|AK073545.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033041K02, full
           insert sequence
          Length = 1127

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 355 cgacggcgtcgccctcgaggccga 378
           |||||||| |||||||||||||||
Sbjct: 291 cgacggcggcgccctcgaggccga 268



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>gb|U37545.1|MMU37545 Mus musculus steroid sulfatase (Sts) mRNA, complete cds
          Length = 2283

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                       
Query: 221 ggcatggccgccggcttcgtggcgacgg 248
           |||||||||| ||||| |||||||||||
Sbjct: 260 ggcatggccggcggctgcgtggcgacgg 233


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,819,880
Number of Sequences: 3902068
Number of extensions: 2819880
Number of successful extensions: 59786
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 59189
Number of HSP's gapped (non-prelim): 597
length of query: 450
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 428
effective length of database: 17,147,199,772
effective search space: 7339001502416
effective search space used: 7339001502416
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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