Clone Name | bastl08e09 |
---|---|
Clone Library Name | barley_pub |
>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome Length = 9025608 Score = 44.1 bits (22), Expect = 0.39 Identities = 25/26 (96%) Strand = Plus / Minus Query: 391 cctcctcgtcaacgccgccggggcgc 416 ||||||||||||||||||||| |||| Sbjct: 1961138 cctcctcgtcaacgccgccggagcgc 1961113
>gb|AC023678.4| Drosophila melanogaster 3L BAC RP98-14K14 (Roswell Park Cancer Institute Drosophila BAC Library) complete sequence Length = 186990 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 12 ccagccgcagtcggtcggcag 32 ||||||||||||||||||||| Sbjct: 18642 ccagccgcagtcggtcggcag 18622
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 1 atccatccattccagccgcag 21 ||||||||||||||||||||| Sbjct: 26196185 atccatccattccagccgcag 26196165
>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome Length = 5013479 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 272 cgcttcgccgtctgggtcgcc 292 ||||||||||||||||||||| Sbjct: 4375811 cgcttcgccgtctgggtcgcc 4375791
>dbj|AP005453.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0453H04 Length = 175047 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 1 atccatccattccagccgcag 21 ||||||||||||||||||||| Sbjct: 60725 atccatccattccagccgcag 60705
>gb|AE003542.3| Drosophila melanogaster chromosome 3L, section 43 of 83 of the complete sequence Length = 303022 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 12 ccagccgcagtcggtcggcag 32 ||||||||||||||||||||| Sbjct: 168474 ccagccgcagtcggtcggcag 168494
>ref|XM_426688.1| PREDICTED: Gallus gallus similar to CDNA sequence BC026799 (LOC429132), mRNA Length = 1446 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 222 gcatggccgccggcttcgtggcga 245 ||||||||||| |||||||||||| Sbjct: 1033 gcatggccgcccgcttcgtggcga 1010
>gb|AE004111.1| Vibrio cholerae O1 biovar eltor str. N16961 chromosome I, section 19 of 251 of the complete chromosome Length = 10191 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 425 gccggggccagcagcaccaa 444 |||||||||||||||||||| Sbjct: 7095 gccggggccagcagcaccaa 7114
>emb|AL034422.24|HS1141E15 Human DNA sequence from clone RP5-1141E15 on chromosome 20q11.23-12 Contains the 5' end of GHRH gene for growth hormone releasing hormone, the MANBAL gene for mannosidase beta A lysosomal-like, the 5' end of the SRC gene for v-src avian sarcoma (Schmidt-Ruppin A-2) viral oncogene homolog and a CpG island, complete sequence Length = 113681 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 410 ggggcgctcacctgggccgg 429 |||||||||||||||||||| Sbjct: 85628 ggggcgctcacctgggccgg 85609
>emb|CR555306.1| Azoarcus sp. EbN1 complete genome Length = 4296230 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 214 gagccgcggcatggccgccggctt 237 |||||||||||||| ||||||||| Sbjct: 4292189 gagccgcggcatgggcgccggctt 4292212
>emb|AJ278573.1|SNA278573 Streptomyces natalensis pimaricin biosynthetic gene cluster Length = 84985 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 358 cggcgtcgccctcgaggccgacgg 381 ||||||||||| |||||||||||| Sbjct: 23031 cggcgtcgcccacgaggccgacgg 23008
>gb|AF416331.1| Ruegeria sp. PR1b plasmid pSD25, complete sequence Length = 148650 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 431 gccagcagcaccaacgccac 450 |||||||||||||||||||| Sbjct: 93625 gccagcagcaccaacgccac 93606
>ref|NM_009293.1| Mus musculus steroid sulfatase (Sts), mRNA Length = 2283 Score = 40.1 bits (20), Expect = 6.1 Identities = 26/28 (92%) Strand = Plus / Minus Query: 221 ggcatggccgccggcttcgtggcgacgg 248 |||||||||| ||||| ||||||||||| Sbjct: 260 ggcatggccggcggctgcgtggcgacgg 233
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 355 cgacggcgtcgccctcgaggccga 378 |||||||| ||||||||||||||| Sbjct: 2463603 cgacggcggcgccctcgaggccga 2463626
>dbj|AB124921.1| Uncultured sulfate-reducing bacterium DsrA, DsrB genes for dissimilatory sulfite reductase alpha and beta subunit, partial cds, clone:NBC-7 Length = 1855 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 364 cgccctcgaggccgacggca 383 |||||||||||||||||||| Sbjct: 1453 cgccctcgaggccgacggca 1472
>gb|AC017079.5| Homo sapiens BAC clone RP11-462M9 from 2, complete sequence Length = 176075 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 403 cgccgccggggcgctcacctgggc 426 ||||||| |||||||||||||||| Sbjct: 164533 cgccgcccgggcgctcacctgggc 164556
>gb|AF272983.1|AF272983 Homo sapiens SRC tyrosine kinase gene, exons 1alpha and 1a, alternatively spliced Length = 4688 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 410 ggggcgctcacctgggccgg 429 |||||||||||||||||||| Sbjct: 4407 ggggcgctcacctgggccgg 4388
>emb|BX932975.1| Gallus gallus finished cDNA, clone ChEST38b17 Length = 813 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 222 gcatggccgccggcttcgtggcga 245 ||||||||||| |||||||||||| Sbjct: 453 gcatggccgcccgcttcgtggcga 430
>dbj|AP005894.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:OSJNBa0095O23 Length = 159792 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 355 cgacggcgtcgccctcgaggccga 378 |||||||| ||||||||||||||| Sbjct: 142013 cgacggcggcgccctcgaggccga 142036
>dbj|AP005583.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC clone:P0406E03 Length = 201069 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 355 cgacggcgtcgccctcgaggccga 378 |||||||| ||||||||||||||| Sbjct: 50193 cgacggcggcgccctcgaggccga 50216
>dbj|AK109426.2| Oryza sativa (japonica cultivar-group) cDNA clone:006-306-E02, full insert sequence Length = 1013 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 355 cgacggcgtcgccctcgaggccga 378 |||||||| ||||||||||||||| Sbjct: 199 cgacggcggcgccctcgaggccga 176
>dbj|AK073545.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033041K02, full insert sequence Length = 1127 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 355 cgacggcgtcgccctcgaggccga 378 |||||||| ||||||||||||||| Sbjct: 291 cgacggcggcgccctcgaggccga 268
>gb|U37545.1|MMU37545 Mus musculus steroid sulfatase (Sts) mRNA, complete cds Length = 2283 Score = 40.1 bits (20), Expect = 6.1 Identities = 26/28 (92%) Strand = Plus / Minus Query: 221 ggcatggccgccggcttcgtggcgacgg 248 |||||||||| ||||| ||||||||||| Sbjct: 260 ggcatggccggcggctgcgtggcgacgg 233 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,819,880 Number of Sequences: 3902068 Number of extensions: 2819880 Number of successful extensions: 59786 Number of sequences better than 10.0: 23 Number of HSP's better than 10.0 without gapping: 23 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 59189 Number of HSP's gapped (non-prelim): 597 length of query: 450 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 428 effective length of database: 17,147,199,772 effective search space: 7339001502416 effective search space used: 7339001502416 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)