ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl08e04
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1POT2_ARATH (O22881) Potassium transporter 2 (AtPOT2) (AtKUP2) (A... 40 0.003
2HAK8_ORYSA (Q8VXB5) Putative potassium transporter 8 (OsHAK8) 38 0.013
3HAK9_ORYSA (Q7XIV8) Probable potassium transporter 9 (OsHAK9) 37 0.028
4HAK13_ORYSA (Q652J4) Probable potassium transporter 13 (OsHAK13) 32 0.54
5POT8_ARATH (Q9M7J9) Potassium transporter 8 (AtPOT8) (AtHAK8) 32 0.70
6POT6_ARATH (Q8W4I4) Potassium transporter 6 (AtPOT6) (AtHAK6) 31 1.2
7GRISA_PODAN (Q92258) GRISEA protein (MAC1 homolog) 30 2.7
8RB6I2_HUMAN (Q8IUD2) RAB6-interacting protein 2 (ERC protein 1) 30 2.7
9RB6I2_MOUSE (Q99MI1) RAB6-interacting protein 2 (ERC protein 1) ... 30 3.5
10RB6I2_RAT (Q811U3) RAB6-interacting protein 2 (ERC protein 1) (E... 30 3.5
11ZO3_MOUSE (Q9QXY1) Tight junction protein ZO-3 (Zonula occludens... 29 5.9
12ICP0_BHV1K (P29836) Trans-acting transcriptional protein ICP0 (P... 29 5.9
13ICP0_BHV1J (P29128) Trans-acting transcriptional protein ICP0 (P... 29 5.9

>POT2_ARATH (O22881) Potassium transporter 2 (AtPOT2) (AtKUP2) (AtKT2)|
          Length = 794

 Score = 40.0 bits (92), Expect = 0.003
 Identities = 20/33 (60%), Positives = 23/33 (69%)
 Frame = +1

Query: 340 MDLELAHGAGAPRKRGESWGAVLLLAYQSLGVV 438
           MDL L    G+   + ESW +VLLLAYQSLGVV
Sbjct: 1   MDLNLGKCCGSRSSKKESWRSVLLLAYQSLGVV 33



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>HAK8_ORYSA (Q8VXB5) Putative potassium transporter 8 (OsHAK8)|
          Length = 793

 Score = 37.7 bits (86), Expect = 0.013
 Identities = 19/33 (57%), Positives = 23/33 (69%)
 Frame = +1

Query: 340 MDLELAHGAGAPRKRGESWGAVLLLAYQSLGVV 438
           MDLE   G  +P++  +SW   LLLAYQSLGVV
Sbjct: 1   MDLEFGRGMRSPQR--DSWKTTLLLAYQSLGVV 31



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>HAK9_ORYSA (Q7XIV8) Probable potassium transporter 9 (OsHAK9)|
          Length = 788

 Score = 36.6 bits (83), Expect = 0.028
 Identities = 22/33 (66%), Positives = 22/33 (66%)
 Frame = +1

Query: 340 MDLELAHGAGAPRKRGESWGAVLLLAYQSLGVV 438
           MD E   G  APRKR E W   LLLAYQSLGVV
Sbjct: 1   MDPEFGRGM-APRKR-EPWRTTLLLAYQSLGVV 31



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>HAK13_ORYSA (Q652J4) Probable potassium transporter 13 (OsHAK13)|
          Length = 778

 Score = 32.3 bits (72), Expect = 0.54
 Identities = 17/29 (58%), Positives = 18/29 (62%), Gaps = 3/29 (10%)
 Frame = +1

Query: 361 GAGAPRKRGESWG---AVLLLAYQSLGVV 438
           G GAP +   SWG     LLLAYQS GVV
Sbjct: 10  GGGAPPRGRNSWGWQKGTLLLAYQSFGVV 38



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>POT8_ARATH (Q9M7J9) Potassium transporter 8 (AtPOT8) (AtHAK8)|
          Length = 781

 Score = 32.0 bits (71), Expect = 0.70
 Identities = 19/33 (57%), Positives = 20/33 (60%)
 Frame = +1

Query: 340 MDLELAHGAGAPRKRGESWGAVLLLAYQSLGVV 438
           MDLE        +K  ESW  VL LAYQSLGVV
Sbjct: 1   MDLERLSPRNPVKK--ESWWTVLTLAYQSLGVV 31



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>POT6_ARATH (Q8W4I4) Potassium transporter 6 (AtPOT6) (AtHAK6)|
          Length = 782

 Score = 31.2 bits (69), Expect = 1.2
 Identities = 17/31 (54%), Positives = 21/31 (67%)
 Frame = +1

Query: 346 LELAHGAGAPRKRGESWGAVLLLAYQSLGVV 438
           +E+  G+    K+ ESW  VL LAYQSLGVV
Sbjct: 1   MEIESGSYQNAKK-ESWRTVLTLAYQSLGVV 30



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>GRISA_PODAN (Q92258) GRISEA protein (MAC1 homolog)|
          Length = 597

 Score = 30.0 bits (66), Expect = 2.7
 Identities = 16/40 (40%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
 Frame = +1

Query: 124 PPRLPRSPLVARSRRSK--AGWRGRVCVGGGDKSPRCDLP 237
           PP  P +P++  S  SK   G  G  C GGG K+P+   P
Sbjct: 250 PPPPPSNPVLEPSAMSKPKGGSGGGGCCGGGKKAPQIQAP 289



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>RB6I2_HUMAN (Q8IUD2) RAB6-interacting protein 2 (ERC protein 1)|
          Length = 1116

 Score = 30.0 bits (66), Expect = 2.7
 Identities = 14/30 (46%), Positives = 16/30 (53%)
 Frame = +1

Query: 121 RPPRLPRSPLVARSRRSKAGWRGRVCVGGG 210
           R PRLPRSP +   R +  G      VGGG
Sbjct: 20  RSPRLPRSPRLGHRRTNSTGGSSGSSVGGG 49



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>RB6I2_MOUSE (Q99MI1) RAB6-interacting protein 2 (ERC protein 1) (ERC1)|
           (CAZ-associated structural protein 2) (CAST2)
          Length = 1120

 Score = 29.6 bits (65), Expect = 3.5
 Identities = 14/30 (46%), Positives = 16/30 (53%)
 Frame = +1

Query: 121 RPPRLPRSPLVARSRRSKAGWRGRVCVGGG 210
           R PRLPRSP +   R +  G      VGGG
Sbjct: 20  RSPRLPRSPRLGHRRTNSTGGSSGNSVGGG 49



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>RB6I2_RAT (Q811U3) RAB6-interacting protein 2 (ERC protein 1) (ERC1)|
           (CAZ-associated structural protein 2) (CAST2)
          Length = 948

 Score = 29.6 bits (65), Expect = 3.5
 Identities = 14/30 (46%), Positives = 16/30 (53%)
 Frame = +1

Query: 121 RPPRLPRSPLVARSRRSKAGWRGRVCVGGG 210
           R PRLPRSP +   R +  G      VGGG
Sbjct: 20  RSPRLPRSPRLGHRRTNSTGGSSGNSVGGG 49



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>ZO3_MOUSE (Q9QXY1) Tight junction protein ZO-3 (Zonula occludens 3 protein)|
           (Zona occludens 3 protein) (Tight junction protein 3)
          Length = 905

 Score = 28.9 bits (63), Expect = 5.9
 Identities = 20/51 (39%), Positives = 28/51 (54%), Gaps = 8/51 (15%)
 Frame = +1

Query: 157 RSRRSKAGWRGRV------CVGGGDKSPRCDLPGGSR--PSVRLLLAVIRS 285
           RSRRS+AG RGRV        GGG ++   DL  G +  P   +L+  ++S
Sbjct: 137 RSRRSRAGRRGRVGSHGRRSSGGGSEANGLDLVSGYKRLPKQDVLMRPLKS 187



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>ICP0_BHV1K (P29836) Trans-acting transcriptional protein ICP0 (P135 protein)|
           (IER 2.9/ER2.6)
          Length = 676

 Score = 28.9 bits (63), Expect = 5.9
 Identities = 17/33 (51%), Positives = 21/33 (63%), Gaps = 3/33 (9%)
 Frame = -3

Query: 309 RGAHGSARAPNHRKKK---TDGRTTPARQIAPR 220
           RGA G+ARA    +++   T GR TPA Q APR
Sbjct: 335 RGASGAARARRPAERQYVSTRGRQTPAVQPAPR 367



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>ICP0_BHV1J (P29128) Trans-acting transcriptional protein ICP0 (P135 protein)|
           (IER 2.9/ER2.6)
          Length = 676

 Score = 28.9 bits (63), Expect = 5.9
 Identities = 17/33 (51%), Positives = 21/33 (63%), Gaps = 3/33 (9%)
 Frame = -3

Query: 309 RGAHGSARAPNHRKKK---TDGRTTPARQIAPR 220
           RGA G+ARA    +++   T GR TPA Q APR
Sbjct: 335 RGASGAARARRPAERQYVSTRGRQTPAVQPAPR 367


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 47,942,896
Number of Sequences: 219361
Number of extensions: 832757
Number of successful extensions: 2859
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 2736
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2859
length of database: 80,573,946
effective HSP length: 101
effective length of database: 58,418,485
effective search space used: 2628831825
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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