ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl08e03 |
|---|---|
| Clone Library Name | barley_pub |
>PYRD_BURMA (Q62K45) Dihydroorotate dehydrogenase (EC 1.3.3.1) (Dihydroorotate| oxidase) (DHOdehase) (DHODase) (DHOD) Length = 345 Score = 35.0 bits (79), Expect = 0.072 Identities = 14/39 (35%), Positives = 25/39 (64%) Frame = +3 Query: 300 PRIPEQPKTLEGLIADDPFRVSASAEEDGTASNGAGEIG 416 PR+P+ P+T+ GL +P ++A ++DG A +G +G Sbjct: 43 PRVPDAPRTVMGLSFRNPVGLAAGLDKDGAAIDGFAALG 81
>PYRD_BURPS (Q63TV1) Dihydroorotate dehydrogenase (EC 1.3.3.1) (Dihydroorotate| oxidase) (DHOdehase) (DHODase) (DHOD) Length = 342 Score = 35.0 bits (79), Expect = 0.072 Identities = 14/39 (35%), Positives = 25/39 (64%) Frame = +3 Query: 300 PRIPEQPKTLEGLIADDPFRVSASAEEDGTASNGAGEIG 416 PR+P+ P+T+ GL +P ++A ++DG A +G +G Sbjct: 43 PRVPDAPRTVMGLSFRNPVGLAAGLDKDGAAIDGFAALG 81
>MDC1_PIG (Q767L8) Mediator of DNA damage checkpoint protein 1| Length = 2042 Score = 32.3 bits (72), Expect = 0.46 Identities = 21/55 (38%), Positives = 27/55 (49%), Gaps = 3/55 (5%) Frame = +3 Query: 165 RRPSLCRAESSQDARQGH---SAPPPPCSRG*RRAAMNFLYRAAQPELPRIPEQP 320 RRP R S A G SAPP P SR R +++ +P LP++PE P Sbjct: 1685 RRPRATRKRESLTAHVGPDPCSAPPEPNSRSSRTQSLS---TTPEPTLPQLPEAP 1736
>ROBO4_MOUSE (Q8C310) Roundabout homolog 4 precursor| Length = 1012 Score = 30.8 bits (68), Expect = 1.4 Identities = 14/28 (50%), Positives = 15/28 (53%), Gaps = 1/28 (3%) Frame = -2 Query: 217 WPWRASWLDSARQSE-GRLGRSEPAGPP 137 W WR WL+ A S RLGR P PP Sbjct: 963 WEWRPDWLEDAEISHTQRLGRGLPPWPP 990
>CO1A2_MOUSE (Q01149) Collagen alpha-2(I) chain precursor| Length = 1372 Score = 30.4 bits (67), Expect = 1.8 Identities = 21/66 (31%), Positives = 26/66 (39%) Frame = -2 Query: 334 PSRVLGCSGIRGSSGCXXXXXXXXXXXRQPREQGGGGAEWPWRASWLDSARQSEGRLGRS 155 P+ G +G RG G E G GA+ P S + R S G G + Sbjct: 338 PAGAAGATGARGLVG-EPGPAGSKGESGNKGEPGSVGAQGPPGPSGEEGKRGSPGEAGSA 396 Query: 154 EPAGPP 137 PAGPP Sbjct: 397 GPAGPP 402
>SYP2L_HUMAN (Q9H987) Synaptopodin 2-like protein| Length = 977 Score = 30.0 bits (66), Expect = 2.3 Identities = 26/84 (30%), Positives = 36/84 (42%) Frame = +3 Query: 141 GPAGSERPRRPSLCRAESSQDARQGHSAPPPPCSRG*RRAAMNFLYRAAQPELPRIPEQP 320 GPA E+PRRP R+G + P PP A + +Y + P E Sbjct: 147 GPATQEKPRRP----------RRRGPTRPTPP------GAPPDEVYLSDSP-----AEPA 185 Query: 321 KTLEGLIADDPFRVSASAEEDGTA 392 T+ G + RVS+ + EDG A Sbjct: 186 PTIPGPPSQGDSRVSSPSWEDGAA 209
>CO1A2_RAT (P02466) Collagen alpha-2(I) chain precursor| Length = 1372 Score = 29.6 bits (65), Expect = 3.0 Identities = 22/71 (30%), Positives = 28/71 (39%) Frame = -2 Query: 349 SSAMRPSRVLGCSGIRGSSGCXXXXXXXXXXXRQPREQGGGGAEWPWRASWLDSARQSEG 170 + A P ++G G GS G E G GA+ P S + R S G Sbjct: 342 AGATGPRGLVGEPGPAGSKG----------ETGNKGEPGSAGAQGPPGPSGEEGKRGSPG 391 Query: 169 RLGRSEPAGPP 137 G + PAGPP Sbjct: 392 EPGSAGPAGPP 402
>ROBO4_HUMAN (Q8WZ75) Roundabout homolog 4 precursor (Magic roundabout)| Length = 1007 Score = 29.6 bits (65), Expect = 3.0 Identities = 13/28 (46%), Positives = 14/28 (50%), Gaps = 1/28 (3%) Frame = -2 Query: 217 WPWRASWLDSARQSE-GRLGRSEPAGPP 137 W WR WL+ S RLGR P PP Sbjct: 954 WEWRPDWLEDMEVSHTQRLGRGMPPWPP 981
>104K_THEPA (P15711) 104 kDa microneme-rhoptry antigen precursor (p104)| Length = 924 Score = 29.6 bits (65), Expect = 3.0 Identities = 23/85 (27%), Positives = 38/85 (44%), Gaps = 2/85 (2%) Frame = +3 Query: 141 GPAGSERPRR-PSLCRAESS-QDARQGHSAPPPPCSRG*RRAAMNFLYRAAQPELPRIPE 314 GPA +P + P+L + S +D + P S+ R A+ R P+LP++ + Sbjct: 554 GPAREHKPSKIPTLSKKPSGPKDPKHPRDPKEPRKSKSPRTASPT---RRPSPKLPQLSK 610 Query: 315 QPKTLEGLIADDPFRVSASAEEDGT 389 PK+ P R S+ +GT Sbjct: 611 LPKSTSPRSPPPPTRPSSPERPEGT 635
>TAB3_HUMAN (Q8N5C8) Mitogen-activated protein kinase kinase kinase| 7-interacting protein 3 (TAK1-binding protein 3) (NF-kappa-B-activating protein 1) Length = 712 Score = 28.9 bits (63), Expect = 5.1 Identities = 13/30 (43%), Positives = 18/30 (60%) Frame = +3 Query: 153 SERPRRPSLCRAESSQDARQGHSAPPPPCS 242 S+ P++PS + + A QG S PPPP S Sbjct: 154 SQPPQQPSSMQTGMNPSAMQGPSPPPPPPS 183
>DEXT_STRMU (Q54443) Dextranase precursor (EC 3.2.1.11)| (Alpha-1,6-glucan-6-glucanohydrolase) Length = 850 Score = 28.9 bits (63), Expect = 5.1 Identities = 15/38 (39%), Positives = 21/38 (55%), Gaps = 4/38 (10%) Frame = +3 Query: 264 MNFLYRAAQPELPRIPEQP----KTLEGLIADDPFRVS 365 M ++ +PE P++PEQP +TLE I P VS Sbjct: 729 MIYINETIKPETPKVPEQPQHPARTLEPAIPQTPEAVS 766
>PUR4_PSEPK (Q88P16) Phosphoribosylformylglycinamidine synthase (EC 6.3.5.3)| (FGAM synthase) (FGAMS) (Formylglycinamide ribotide amidotransferase) (FGARAT) (Formylglycinamide ribotide synthetase) Length = 1299 Score = 28.9 bits (63), Expect = 5.1 Identities = 14/31 (45%), Positives = 17/31 (54%), Gaps = 2/31 (6%) Frame = -3 Query: 270 NSWPLAVSRASRGG--EARNGPGGRPGSTPH 184 N++P V+ RGG E RN P PG PH Sbjct: 508 NAFPELVNDGGRGGRFELRNVPNDEPGMAPH 538
>SOXC_RHOSG (P54998) Dibenzothiophene desulfurization enzyme C (DBT sulfur| dioxygenase) Length = 417 Score = 28.9 bits (63), Expect = 5.1 Identities = 12/29 (41%), Positives = 16/29 (55%) Frame = -2 Query: 247 PREQGGGGAEWPWRASWLDSARQSEGRLG 161 PRE GG GA+WP + ++G LG Sbjct: 63 PREYGGWGADWPTAIEVVREIAAADGSLG 91
>TAB3_MOUSE (Q571K4) Mitogen-activated protein kinase kinase kinase| 7-interacting protein 3 (TAK1-binding protein 3) Length = 716 Score = 28.9 bits (63), Expect = 5.1 Identities = 13/30 (43%), Positives = 18/30 (60%) Frame = +3 Query: 153 SERPRRPSLCRAESSQDARQGHSAPPPPCS 242 S+ P++PS + + A QG S PPPP S Sbjct: 154 SQPPQQPSSMQTGMNPSAMQGPSPPPPPPS 183
>PRAX_MOUSE (O55103) Periaxin| Length = 1391 Score = 28.9 bits (63), Expect = 5.1 Identities = 18/44 (40%), Positives = 24/44 (54%), Gaps = 2/44 (4%) Frame = +3 Query: 186 AESSQDARQGHSAPPPPCSRG*RRAAMNFLYRAAQPEL--PRIP 311 AE +Q AR +APPP ++ AA + A Q EL PR+P Sbjct: 199 AEEAQVARMAAAAPPPRKAKAEAEAATGAGFTAPQIELVGPRLP 242
>BAG1_MOUSE (Q60739) BAG family molecular chaperone regulator 1 (BCL-2-binding| athanogene-1) (BAG-1) Length = 355 Score = 28.9 bits (63), Expect = 5.1 Identities = 14/31 (45%), Positives = 18/31 (58%) Frame = +3 Query: 132 TRGGPAGSERPRRPSLCRAESSQDARQGHSA 224 TRG PAG+ +PR R SSQ + G S+ Sbjct: 60 TRGAPAGACKPRVKKKVRPRSSQSEKVGSSS 90
>FILA_HUMAN (P20930) Filaggrin| Length = 4061 Score = 28.5 bits (62), Expect = 6.7 Identities = 24/69 (34%), Positives = 29/69 (42%), Gaps = 1/69 (1%) Frame = -2 Query: 358 RNGSSAMRPSRVLGCSGIRGSSGCXXXXXXXXXXXRQPREQGGGGAEWPWRASWLDSARQ 179 R SSA+R S G GSSG + G G + P + S +SAR Sbjct: 1052 RQASSAVRDS------GHWGSSGSQASDSEGHSEESDTQSVSGHGQDGPHQQSHQESARD 1105 Query: 178 -SEGRLGRS 155 S GR GRS Sbjct: 1106 WSGGRSGRS 1114
>PYRD_RALSO (Q8XYY7) Dihydroorotate dehydrogenase (EC 1.3.3.1) (Dihydroorotate| oxidase) (DHOdehase) (DHODase) (DHOD) Length = 344 Score = 28.5 bits (62), Expect = 6.7 Identities = 11/38 (28%), Positives = 22/38 (57%) Frame = +3 Query: 303 RIPEQPKTLEGLIADDPFRVSASAEEDGTASNGAGEIG 416 R+ QP+T+ G+ +P ++A ++DG + G +G Sbjct: 44 RVAPQPRTVMGIAFPNPVGLAAGLDKDGAYIDALGALG 81
>CO1A1_HUMAN (P02452) Collagen alpha-1(I) chain precursor| Length = 1464 Score = 28.5 bits (62), Expect = 6.7 Identities = 16/37 (43%), Positives = 19/37 (51%) Frame = -2 Query: 247 PREQGGGGAEWPWRASWLDSARQSEGRLGRSEPAGPP 137 P E+G GA P A D A + G G + PAGPP Sbjct: 307 PGERGRPGAPGPAGARGNDGATGAAGPPGPTGPAGPP 343
>CO1A1_CANFA (Q9XSJ7) Collagen alpha-1(I) chain precursor| Length = 1460 Score = 28.5 bits (62), Expect = 6.7 Identities = 16/37 (43%), Positives = 19/37 (51%) Frame = -2 Query: 247 PREQGGGGAEWPWRASWLDSARQSEGRLGRSEPAGPP 137 P E+G GA P A D A + G G + PAGPP Sbjct: 303 PGERGRPGAPGPAGARGNDGATGAAGPPGPTGPAGPP 339
>ZEP1_MOUSE (Q03172) Zinc finger protein 40 (Transcription factor alphaA-CRYBP1)| (Alpha A-crystallin-binding protein I) (Alpha A-CRYBP1) Length = 2688 Score = 28.1 bits (61), Expect = 8.8 Identities = 27/91 (29%), Positives = 34/91 (37%) Frame = +3 Query: 141 GPAGSERPRRPSLCRAESSQDARQGHSAPPPPCSRG*RRAAMNFLYRAAQPELPRIPEQP 320 G G+ P+ E A QGHSA PP S PE P+ E P Sbjct: 2552 GTTGTPETTAPNSKAMELQMPAGQGHSAEPPQGS----------------PEGPQ--ETP 2593 Query: 321 KTLEGLIADDPFRVSASAEEDGTASNGAGEI 413 +T+ G AD R S + D AG + Sbjct: 2594 QTVSGPSADHA-RPEDSTKMDTKKGPSAGHV 2623
>SYN_DROME (Q24546) Synapsin [Contains: Synapsin-1 (Syn1) (Syn1-S); Synapsin-2| (Syn2)] Length = 1025 Score = 28.1 bits (61), Expect = 8.8 Identities = 29/87 (33%), Positives = 35/87 (40%), Gaps = 1/87 (1%) Frame = +3 Query: 162 PRRPSLC-RAESSQDARQGHSAPPPPCSRG*RRAAMNFLYRAAQPELPRIPEQPKTLEGL 338 P R S+ RAES D AP PP G R A M P IPE+ G Sbjct: 453 PSRSSVSSRAESPTDEGV---APTPPLPAGPRPAPMG--------GPPPIPERTSPAVGS 501 Query: 339 IADDPFRVSASAEEDGTASNGAGEIGG 419 I R S S + +S+G +GG Sbjct: 502 IGRLSSRSSISEVPEEPSSSGPSTVGG 528
>THA_SALSA (Q9W785) Thyroid hormone receptor alpha| Length = 416 Score = 28.1 bits (61), Expect = 8.8 Identities = 11/19 (57%), Positives = 13/19 (68%) Frame = -1 Query: 113 GDLGRWWEGTKRKRKRKSC 57 GD RW +G KRKRK +C Sbjct: 15 GDEKRWPDGPKRKRKNSTC 33 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 41,659,671 Number of Sequences: 219361 Number of extensions: 673938 Number of successful extensions: 3773 Number of sequences better than 10.0: 23 Number of HSP's better than 10.0 without gapping: 3233 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3748 length of database: 80,573,946 effective HSP length: 101 effective length of database: 58,418,485 effective search space used: 2278320915 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
