Clone Information

BLAST Search Result

Clone Name	bastl08d11
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	SAFB1_HUMAN (Q15424) Scaffold attachment factor B (Scaffold atta...	39	0.006
2	SAFB1_RAT (O88453) Scaffold attachment factor B (Scaffold attach...	37	0.028
3	CAC1A_RABIT (P27884) Voltage-dependent P/Q-type calcium channel ...	33	0.41
4	RS3_CORDI (Q6NJC9) 30S ribosomal protein S3	33	0.41
5	COGA1_HUMAN (Q07092) Collagen alpha-1(XVI) chain precursor	33	0.41
6	WDR33_HUMAN (Q9C0J8) WD-repeat protein 33 (WD-repeat protein WDC...	32	0.54
7	PER_DROPV (P91698) Period circadian protein (Fragment)	32	0.70
8	YQFB_BACSU (P54467) Hypothetical protein yqfB	32	0.91
9	SFPQ_MOUSE (Q8VIJ6) Splicing factor, proline- and glutamine-rich...	31	1.2
10	RS3_CORGL (Q8NT01) 30S ribosomal protein S3	31	1.2
11	RS3_COREF (P59181) 30S ribosomal protein S3	31	1.2
12	SFPQ_HUMAN (P23246) Splicing factor, proline- and glutamine-rich...	31	1.2
13	QIN_AVIS3 (P56260) Transforming protein Qin (Oncogene Qin)	31	1.6
14	PYR1_HUMAN (P27708) CAD protein [Includes: Glutamine-dependent c...	31	1.6
15	FOXGB_CHICK (Q90964) Forkhead box protein G1B (Forkhead-related ...	31	1.6
16	S12A2_SQUAC (P55013) Solute carrier family 12 member 2 (Bumetani...	31	1.6
17	CXCC1_HUMAN (Q9P0U4) CpG-binding protein (PHD finger and CXXC do...	30	2.0
18	FA53C_MOUSE (Q8BXQ8) Protein FAM53C	30	2.0
19	RUSC2_MOUSE (Q80U22) RUN and SH3 domain-containing protein 2	30	2.0
20	VE2_BPV3 (Q8BDD6) Regulatory protein E2	30	2.0
21	WEE1_RAT (Q63802) Wee1-like protein kinase (EC 2.7.10.2)	30	2.0
22	TNR21_HUMAN (O75509) Tumor necrosis factor receptor superfamily ...	30	2.0
23	EPIPL_HUMAN (P58107) Epiplakin (450 kDa epidermal antigen)	30	2.0
24	RHLB_XANAC (Q8PFZ3) ATP-dependent RNA helicase rhlB (EC 3.6.1.-)	30	2.7
25	PER_DROPU (P91697) Period circadian protein (Fragment)	30	2.7
26	NCKX1_BOVIN (Q28139) Sodium/potassium/calcium exchanger 1 (Na(+)...	30	3.5
27	IF4G3_MOUSE (Q80XI3) Eukaryotic translation initiation factor 4 ...	30	3.5
28	CAC1A_RAT (P54282) Voltage-dependent P/Q-type calcium channel al...	30	3.5
29	RHLB_XANOR (Q5GUR8) ATP-dependent RNA helicase rhlB (EC 3.6.1.-)	30	3.5
30	ENH1_PANTR (P61559) ERV-H1 provirus ancestral Env polyprotein pr...	30	3.5
31	WEE1_MOUSE (P47810) Wee1-like protein kinase (EC 2.7.10.2)	30	3.5
32	Y462_TREPA (O83475) Hypothetical lipoprotein TP0462/TP0463 precu...	29	4.5
33	TEGU_EBV (P03186) Large tegument protein	29	4.5
34	CLIC6_HUMAN (Q96NY7) Chloride intracellular channel 6	29	4.5
35	T2_MOUSE (Q06666) Octapeptide-repeat protein T2	29	4.5
36	IF2_PROAC (Q6A7M5) Translation initiation factor IF-2	29	4.5
37	CAC1A_MOUSE (P97445) Voltage-dependent P/Q-type calcium channel ...	29	4.5
38	RS13_THEFY (Q47LL9) 30S ribosomal protein S13	29	4.5
39	PER_DROTP (P91716) Period circadian protein (Fragment)	29	4.5
40	SAFB2_HUMAN (Q14151) Scaffold attachment factor B2	29	4.5
41	RHLB_XYLFA (Q9PA24) ATP-dependent RNA helicase rhlB (EC 3.6.1.-)	29	4.5
42	KIF3B_HUMAN (O15066) Kinesin-like protein KIF3B (Microtubule plu...	29	4.5
43	VASP_MOUSE (P70460) Vasodilator-stimulated phosphoprotein (VASP)	29	4.5
44	TNR21_MOUSE (Q9EPU5) Tumor necrosis factor receptor superfamily ...	29	4.5
45	ADA2B_CAVPO (Q60475) Alpha-2B adrenergic receptor (Alpha-2B adre...	29	4.5
46	ACE2_PAGLA (Q56NL1) Angiotensin-converting enzyme 2 precursor (E...	29	5.9
47	VE4_HPV05 (P06924) Probable protein E4	29	5.9
48	L52_ADEG1 (Q64753) Late L1 52 kDa protein	29	5.9
49	RM03_CAEEL (P49404) Putative mitochondrial 39S ribosomal protein L3	29	5.9
50	METE_MYCTU (P65340) 5-methyltetrahydropteroyltriglutamate--homoc...	29	5.9
51	METE_MYCBO (P65341) 5-methyltetrahydropteroyltriglutamate--homoc...	29	5.9
52	WNK2_HUMAN (Q9Y3S1) Serine/threonine-protein kinase WNK2 (EC 2.7...	28	7.7
53	MYO9B_MOUSE (Q9QY06) Myosin-9B (Myosin IXb) (Unconventional myos...	28	7.7
54	GCM2_MOUSE (O09102) Chorion-specific transcription factor GCMb (...	28	7.7
55	GAS6_HUMAN (Q14393) Growth-arrest-specific protein 6 precursor (...	28	7.7

>SAFB1_HUMAN (Q15424) Scaffold attachment factor B (Scaffold attachment factor B1)|
            (SAF-B) (HSP27 estrogen response element-TATA box-binding
            protein) (HSP27 ERE-TATA-binding protein)
          Length = 915

 Score = 38.9 bits (89), Expect = 0.006
 Identities = 30/91 (32%), Positives = 41/91 (45%), Gaps = 3/91 (3%)
 Frame = -3

Query: 287  LGDVVGERRELRLHGPQLRRHRRGLPAGGPGEQSEREQQEGHGEGCARPPPVPRALCIAH 108
            +G+  G+    R  GP+  RH R    G  G  S++   EG G      PP PR     H
Sbjct: 772  MGEREGQHYPERHGGPE--RHGRDSRDGWGGYGSDKRMSEGRGL-----PPPPRRDWGDH 824

Query: 107  SEAEEQRRGWAGTAEGA---KDKERGSGGAK 24
               E+ R  W GTA+G    +D +R  GG +
Sbjct: 825  GRREDDR-SWQGTADGGMMDRDHKRWQGGER 854

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>SAFB1_RAT (O88453) Scaffold attachment factor B (Scaffold attachment factor B1)|
            (SAF-B)
          Length = 931

 Score = 36.6 bits (83), Expect = 0.028
 Identities = 30/91 (32%), Positives = 41/91 (45%), Gaps = 3/91 (3%)
 Frame = -3

Query: 287  LGDVVGERRELRLHGPQLRRHRRGLPAGGPGEQSEREQQEGHGEGCARPPPVPRALCIAH 108
            +GD  G+    R  GP+  RH R     G G  S +   EG G      P +PR     H
Sbjct: 796  MGDREGQHYPERHGGPE--RHGRD-SRDGWGYGSNKRLSEGRGL-----PLLPRRDWGEH 847

Query: 107  SEAEEQRRGWAGTAEGA---KDKERGSGGAK 24
            +   E  R W GTA+G    +D++R  GG +
Sbjct: 848  ARRLEDDRAWQGTADGGMMERDQQRWQGGER 878

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>CAC1A_RABIT (P27884) Voltage-dependent P/Q-type calcium channel alpha-1A subunit|
            (Voltage-gated calcium channel alpha subunit Cav2.1)
            (Calcium channel, L type, alpha-1 polypeptide isoform 4)
            (Brain calcium channel I) (BI)
          Length = 2424

 Score = 32.7 bits (73), Expect = 0.41
 Identities = 26/72 (36%), Positives = 31/72 (43%), Gaps = 19/72 (26%)
 Frame = -3

Query: 326  RVGDAEAEAVGDGLGDVVGERRELRLHGP------------QLRRHRR-------GLPAG 204
            R G+ EAE   DG G   GERR    HGP            + RRHRR       G+P  
Sbjct: 993  RSGEGEAEGP-DGGGGGGGERRRRHRHGPPPAYDPDARRDDRERRHRRRKDTQGSGVPVS 1051

Query: 203  GPGEQSEREQQE 168
            GP   + R  Q+
Sbjct: 1052 GPNLSTTRPIQQ 1063

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>RS3_CORDI (Q6NJC9) 30S ribosomal protein S3|
          Length = 248

 Score = 32.7 bits (73), Expect = 0.41
 Identities = 20/44 (45%), Positives = 24/44 (54%), Gaps = 4/44 (9%)
 Frame = -3

Query: 284 GDVVGERRELRLHGPQLRR---HRRGLP-AGGPGEQSEREQQEG 165
           GDVVG RRE  ++ P  RR    R G P  GG   Q   ++QEG
Sbjct: 205 GDVVGGRRESEINAPAERRGRGDRNGRPRRGGQRRQRSEQKQEG 248

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>COGA1_HUMAN (Q07092) Collagen alpha-1(XVI) chain precursor|
          Length = 1603

 Score = 32.7 bits (73), Expect = 0.41
 Identities = 25/81 (30%), Positives = 34/81 (41%), Gaps = 7/81 (8%)
 Frame = -3

Query: 245 GPQLRRHRRGLPAGGPGEQSEREQQEGHGEGCARPPPVPRALCIAHSEAEEQRRGWAG-- 72
           GP+  +  RGLP G PG + E+  +   G  C R  P     C    + E+   G  G  
Sbjct: 334 GPKGGKGERGLP-GPPGSKGEKGAR---GNDCVRISPDAPLQCAEGPKGEKGESGALGPS 389

Query: 71  -----TAEGAKDKERGSGGAK 24
                T E  +  E+G GG K
Sbjct: 390 GLPGSTGEKGQKGEKGDGGIK 410

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>WDR33_HUMAN (Q9C0J8) WD-repeat protein 33 (WD-repeat protein WDC146)|
          Length = 1336

 Score = 32.3 bits (72), Expect = 0.54
 Identities = 18/36 (50%), Positives = 19/36 (52%)
 Frame = -3

Query: 242  PQLRRHRRGLPAGGPGEQSEREQQEGHGEGCARPPP 135
            PQ  + RRG P G P     RE  EG G G AR PP
Sbjct: 1040 PQEEKWRRGGP-GPPFPPDHREFSEGDGRGAARGPP 1074

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>PER_DROPV (P91698) Period circadian protein (Fragment)|
          Length = 396

 Score = 32.0 bits (71), Expect = 0.70
 Identities = 23/76 (30%), Positives = 32/76 (42%), Gaps = 9/76 (11%)
 Frame = -3

Query: 227 HRRGLPAGGP----GEQSEREQQ-----EGHGEGCARPPPVPRALCIAHSEAEEQRRGWA 75
           H  G+  GG     GE ++ +QQ      G G G      +P  L I H+ +  Q +G A
Sbjct: 173 HGHGIKRGGSHSWEGEANKPKQQLTLNTSGGGGGVGVGGGMPLFLDITHASSSSQNKGLA 232

Query: 74  GTAEGAKDKERGSGGA 27
           G   G      G GG+
Sbjct: 233 GVGVGGAGGVVGGGGS 248

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>YQFB_BACSU (P54467) Hypothetical protein yqfB|
          Length = 139

 Score = 31.6 bits (70), Expect = 0.91
 Identities = 22/86 (25%), Positives = 37/86 (43%)
 Frame = -3

Query: 278 VVGERRELRLHGPQLRRHRRGLPAGGPGEQSEREQQEGHGEGCARPPPVPRALCIAHSEA 99
           + G++ +      Q R+  + + +  P ++  +E           P P+P  +  A  EA
Sbjct: 21  IFGKKSKEEKQNSQKRKKPQHVQSASPQKKQSKEDA---------PAPIPNRMVQARREA 71

Query: 98  EEQRRGWAGTAEGAKDKERGSGGAKE 21
           EE+RR    TA   K  ER    AK+
Sbjct: 72  EERRR---ETARNLKGLERDLAAAKQ 94

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>SFPQ_MOUSE (Q8VIJ6) Splicing factor, proline- and glutamine-rich|
           (Polypyrimidine tract-binding protein-associated
           splicing factor) (PTB-associated splicing factor) (PSF)
           (DNA-binding p52/p100 complex, 100 kDa subunit)
          Length = 699

 Score = 31.2 bits (69), Expect = 1.2
 Identities = 15/44 (34%), Positives = 24/44 (54%)
 Frame = -3

Query: 290 GLGDVVGERRELRLHGPQLRRHRRGLPAGGPGEQSEREQQEGHG 159
           G G+  G R+    H P  ++H +G P GGPG ++E +  +  G
Sbjct: 229 GGGEPRGGRQH---HAPYHQQHHQGPPPGGPGPRTEEKISDSEG 269

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>RS3_CORGL (Q8NT01) 30S ribosomal protein S3|
          Length = 248

 Score = 31.2 bits (69), Expect = 1.2
 Identities = 19/44 (43%), Positives = 23/44 (52%), Gaps = 4/44 (9%)
 Frame = -3

Query: 284 GDVVGERRELRLHGPQLRRHRRGLPA----GGPGEQSEREQQEG 165
           GDVVG RRE  ++ P  RR R    A    GG   Q   ++QEG
Sbjct: 205 GDVVGGRRESEINAPAERRGRGDRNARPRRGGQRRQRAEQKQEG 248

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>RS3_COREF (P59181) 30S ribosomal protein S3|
          Length = 248

 Score = 31.2 bits (69), Expect = 1.2
 Identities = 19/44 (43%), Positives = 23/44 (52%), Gaps = 4/44 (9%)
 Frame = -3

Query: 284 GDVVGERRELRLHGPQLRRHRRGLPA----GGPGEQSEREQQEG 165
           GDVVG RRE  ++ P  RR R    A    GG   Q   ++QEG
Sbjct: 205 GDVVGGRRESEINAPAERRGRGDRNARPRRGGQRRQRAEQKQEG 248

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>SFPQ_HUMAN (P23246) Splicing factor, proline- and glutamine-rich|
           (Polypyrimidine tract-binding protein-associated
           splicing factor) (PTB-associated splicing factor) (PSF)
           (DNA-binding p52/p100 complex, 100 kDa subunit) (100-kDa
           DNA-pairing protein) (hPOMp
          Length = 707

 Score = 31.2 bits (69), Expect = 1.2
 Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
 Frame = -3

Query: 272 GERRELRLHGPQL-RRHRRGLPAGGPGEQSEREQQEGHG 159
           GE R  R H P   ++H +G P GGPG +SE +  +  G
Sbjct: 239 GEPRGGRQHHPPYHQQHHQGPPPGGPGGRSEEKISDSEG 277

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>QIN_AVIS3 (P56260) Transforming protein Qin (Oncogene Qin)|
          Length = 387

 Score = 30.8 bits (68), Expect = 1.6
 Identities = 25/95 (26%), Positives = 32/95 (33%), Gaps = 17/95 (17%)
 Frame = -3

Query: 248 HGPQLRRHRRGLPAGGPGEQSEREQQEGHGEGCARPPPVPRALCIAHSEA---------- 99
           H      H    P   P   +  E+++        PPP   AL  A +EA          
Sbjct: 45  HHHHHHHHHHPPPPQQPQRAAAAEEEDEEKAPLLLPPPAAGALEAAKAEALAGKGEAGAA 104

Query: 98  -------EEQRRGWAGTAEGAKDKERGSGGAKETG 15
                  E+      G AEG KD E G  G K+ G
Sbjct: 105 AAELEEKEKAAEEKKGAAEGGKDGESGKEGEKKNG 139

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>PYR1_HUMAN (P27708) CAD protein [Includes: Glutamine-dependent|
            carbamoyl-phosphate synthase (EC 6.3.5.5); Aspartate
            carbamoyltransferase (EC 2.1.3.2); Dihydroorotase (EC
            3.5.2.3)]
          Length = 2225

 Score = 30.8 bits (68), Expect = 1.6
 Identities = 24/51 (47%), Positives = 27/51 (52%), Gaps = 8/51 (15%)
 Frame = -3

Query: 254  RLHGPQLRRHRR---GLPAGGPGEQSEREQQE----GHGEG-CARPPPVPR 126
            R H P  R HR    GLPA  P E+S R+  E    G  +G C  PPPVPR
Sbjct: 1848 RFHLPP-RIHRASDPGLPAEEPKEKSSRKVAEPELMGTPDGTCYPPPPVPR 1897

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>FOXGB_CHICK (Q90964) Forkhead box protein G1B (Forkhead-related protein FKHL1)|
           (Transcription factor BF-1) (Brain factor 1) (BF1)
           (CBF-1) (Proto-oncogene C-QIN) (N-62-5) (CEQ 3-1)
          Length = 451

 Score = 30.8 bits (68), Expect = 1.6
 Identities = 25/95 (26%), Positives = 32/95 (33%), Gaps = 17/95 (17%)
 Frame = -3

Query: 248 HGPQLRRHRRGLPAGGPGEQSEREQQEGHGEGCARPPPVPRALCIAHSEA---------- 99
           H      H    P   P   +  E+++        PPP   AL  A +EA          
Sbjct: 45  HHHHHHHHHHPPPPQQPQRAAAAEEEDEEKAPLLLPPPAAGALEAAKAEALAGKGEAGAA 104

Query: 98  -------EEQRRGWAGTAEGAKDKERGSGGAKETG 15
                  E+      G AEG KD E G  G K+ G
Sbjct: 105 AAELEEKEKAAEEKKGAAEGGKDGESGKEGEKKNG 139

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>S12A2_SQUAC (P55013) Solute carrier family 12 member 2 (Bumetanide-sensitive|
           sodium-(potassium)-chloride cotransporter 1) (NA-K-CL
           symporter) (NKCC)
          Length = 1191

 Score = 30.8 bits (68), Expect = 1.6
 Identities = 22/75 (29%), Positives = 31/75 (41%), Gaps = 13/75 (17%)
 Frame = -3

Query: 212 PAGGPGEQSEREQQEGHGEGCARPPPVPRALCIAHSEAE-------------EQRRGWAG 72
           PA   G QS+   + G G+    PP  P     + S  +             ++ +  A 
Sbjct: 6   PASSAGVQSQSGPEPGAGQQEPPPPATPLRPVASQSRFQVDLVTEGGGGGDGQKGQTAAQ 65

Query: 71  TAEGAKDKERGSGGA 27
            A  AKDK+RG GGA
Sbjct: 66  PAAAAKDKDRGDGGA 80

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>CXCC1_HUMAN (Q9P0U4) CpG-binding protein (PHD finger and CXXC domain-containing|
           protein 1) (CXXC finger protein 1)
          Length = 656

 Score = 30.4 bits (67), Expect = 2.0
 Identities = 24/72 (33%), Positives = 32/72 (44%), Gaps = 3/72 (4%)
 Frame = -3

Query: 263 RELRLHGPQLR---RHRRGLPAGGPGEQSEREQQEGHGEGCARPPPVPRALCIAHSEAEE 93
           RE R   P+L    RH++     G    +ER+  E   EG  R  PVP        + + 
Sbjct: 71  RECREKDPKLEIRYRHKKSRERDG----NERDSSEPRDEGGGRKRPVP--------DPDL 118

Query: 92  QRRGWAGTAEGA 57
           QRR  +GT  GA
Sbjct: 119 QRRAGSGTGVGA 130

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>FA53C_MOUSE (Q8BXQ8) Protein FAM53C|
          Length = 393

 Score = 30.4 bits (67), Expect = 2.0
 Identities = 15/38 (39%), Positives = 20/38 (52%)
 Frame = +2

Query: 23  PSLLRCLSPCPWLPPQCQPIPAAALPPRNARCRALAVP 136
           P L + LSP    PP  + +P    PP    CR+L+VP
Sbjct: 90  PPLSQVLSP---EPPDPEKLPVPPAPPSKRHCRSLSVP 124

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>RUSC2_MOUSE (Q80U22) RUN and SH3 domain-containing protein 2|
          Length = 1514

 Score = 30.4 bits (67), Expect = 2.0
 Identities = 18/47 (38%), Positives = 21/47 (44%), Gaps = 7/47 (14%)
 Frame = -3

Query: 197  GEQSEREQQEGHGEGCARPPPVPR-------ALCIAHSEAEEQRRGW 78
            G  SE+++  G G     PPP PR         C A  EA  Q RGW
Sbjct: 1293 GSGSEKKKGVGSGGPSQAPPPPPREGVVEGAEACPAPEEALGQERGW 1339

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>VE2_BPV3 (Q8BDD6) Regulatory protein E2|
          Length = 414

 Score = 30.4 bits (67), Expect = 2.0
 Identities = 16/40 (40%), Positives = 20/40 (50%)
 Frame = -3

Query: 254 RLHGPQLRRHRRGLPAGGPGEQSEREQQEGHGEGCARPPP 135
           R   P +     G P GG G +  R+QQ+G G G A P P
Sbjct: 266 RPRAPHVPDQETGRPPGGGGRRGSRDQQQGPG-GPAPPSP 304

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>WEE1_RAT (Q63802) Wee1-like protein kinase (EC 2.7.10.2)|
          Length = 646

 Score = 30.4 bits (67), Expect = 2.0
 Identities = 23/77 (29%), Positives = 35/77 (45%), Gaps = 13/77 (16%)
 Frame = -3

Query: 206 GGPGEQSEREQQEGHGEGCARPP-------PVPRALCIAHSEAEEQRR--GWAGTAEGAK 54
           G   E+ E E++EG G              P+P A   A +EAE +RR  G   ++ G  
Sbjct: 30  GSDCEEEEEEEEEGSGHSTGEDSAFQEPDSPLPSARSPAEAEAERRRRSPGAEPSSPGEL 89

Query: 53  DKE----RGSGGAKETG 15
           +++     G GGA+  G
Sbjct: 90  EEDLLLRGGGGGAQAAG 106

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>TNR21_HUMAN (O75509) Tumor necrosis factor receptor superfamily member 21|
           precursor (TNFR-related death receptor 6) (Death
           receptor 6)
          Length = 655

 Score = 30.4 bits (67), Expect = 2.0
 Identities = 12/27 (44%), Positives = 14/27 (51%)
 Frame = +2

Query: 38  CLSPCPWLPPQCQPIPAAALPPRNARC 118
           C  PCPW  P  + +P AAL  R   C
Sbjct: 109 CSQPCPW--PMIEKLPCAALTDRECTC 133

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>EPIPL_HUMAN (P58107) Epiplakin (450 kDa epidermal antigen)|
          Length = 5065

 Score = 30.4 bits (67), Expect = 2.0
 Identities = 22/60 (36%), Positives = 28/60 (46%), Gaps = 4/60 (6%)
 Frame = -3

Query: 320  GDAEAEAVGDGLGDVVGERRELRLHGPQLRRHRRGL----PAGGPGEQSEREQQEGHGEG 153
            G  +  A+   L  ++ E  E     PQL+  RRG     PAG     S R Q+EG GEG
Sbjct: 2535 GTLDLPALTRRLTAIIEEAEEAPGARPQLQDARRGPREPGPAGRGDGDSGRSQREGQGEG 2594

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>RHLB_XANAC (Q8PFZ3) ATP-dependent RNA helicase rhlB (EC 3.6.1.-)|
          Length = 571

 Score = 30.0 bits (66), Expect = 2.7
 Identities = 19/65 (29%), Positives = 25/65 (38%)
 Frame = -3

Query: 320 GDAEAEAVGDGLGDVVGERRELRLHGPQLRRHRRGLPAGGPGEQSEREQQEGHGEGCARP 141
           G+   +  GD +G +  E RE R    Q R   RG P G         +     +G  RP
Sbjct: 403 GEEADDDAGDSVGTIFREAREQRAAEEQRRGGGRGGPGGSRSGSGGGRRDGAGADGKPRP 462

Query: 140 PPVPR 126
              PR
Sbjct: 463 RRKPR 467

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>PER_DROPU (P91697) Period circadian protein (Fragment)|
          Length = 396

 Score = 30.0 bits (66), Expect = 2.7
 Identities = 23/76 (30%), Positives = 32/76 (42%), Gaps = 9/76 (11%)
 Frame = -3

Query: 227 HRRGLPAGGP----GEQSEREQQE-----GHGEGCARPPPVPRALCIAHSEAEEQRRGWA 75
           H  G+  GG     GE ++ +QQ      G G G      +P  L I H+ +  Q +G A
Sbjct: 173 HGHGIKRGGSHSWEGEANKPKQQLTLNTIGGGGGGGVGGGMPLFLDITHASSSSQNKGLA 232

Query: 74  GTAEGAKDKERGSGGA 27
           G   G      G GG+
Sbjct: 233 GVGVGGAGGVVGGGGS 248

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>NCKX1_BOVIN (Q28139) Sodium/potassium/calcium exchanger 1|
            (Na(+)/K(+)/Ca(2+)-exchange protein 1) (Retinal rod
            Na-Ca+K exchanger)
          Length = 1216

 Score = 29.6 bits (65), Expect = 3.5
 Identities = 30/114 (26%), Positives = 48/114 (42%), Gaps = 14/114 (12%)
 Frame = -3

Query: 320  GDAEAEAVGDGLGDVVGERR-------ELRLHGPQLRRHR-RGLPAGGPGEQSEREQQEG 165
            G++E +A  +  GD+  ERR       E++  G +++     G    G G + E ++ EG
Sbjct: 774  GESEGKAENESEGDIPAERRGDDEDEGEIQAEGGEVKGDEDEGEIQAGEGGEVEGDEDEG 833

Query: 164  H---GEGCARPPPVPRALCIAHSEAEEQRRGWAGTAEGAKDK---ERGSGGAKE 21
                GEG                +  E + G AG  EG +D+   + G GG  E
Sbjct: 834  EIQAGEG---------GEVEGDEDEGEIQAGEAGEVEGDEDEGEIQAGEGGEVE 878

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>IF4G3_MOUSE (Q80XI3) Eukaryotic translation initiation factor 4 gamma 3|
           (eIF-4-gamma 3) (eIF-4G 3) (eIF4G 3) (eIF-4-gamma II)
           (eIF4GII)
          Length = 1579

 Score = 29.6 bits (65), Expect = 3.5
 Identities = 15/37 (40%), Positives = 18/37 (48%)
 Frame = +2

Query: 20  SPSLLRCLSPCPWLPPQCQPIPAAALPPRNARCRALA 130
           +PS+L   SP P  PP   P P   L    AR  A+A
Sbjct: 404 APSMLPAFSPAPPTPPTSPPCPPVVLSAAIARSPAVA 440

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>CAC1A_RAT (P54282) Voltage-dependent P/Q-type calcium channel alpha-1A subunit|
            (Voltage-gated calcium channel alpha subunit Cav2.1)
            (Calcium channel, L type, alpha-1 polypeptide, isoform 4)
            (Brain calcium channel I) (BI) (RAT brain class A)
            (RBA-I)
          Length = 2212

 Score = 29.6 bits (65), Expect = 3.5
 Identities = 14/37 (37%), Positives = 18/37 (48%)
 Frame = -3

Query: 245  GPQLRRHRRGLPAGGPGEQSEREQQEGHGEGCARPPP 135
            G + RRHR G PA    E+  R ++E  G G     P
Sbjct: 964  GERKRRHRHGPPAHDDRERRHRRRKESQGSGVPMSGP 1000

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>RHLB_XANOR (Q5GUR8) ATP-dependent RNA helicase rhlB (EC 3.6.1.-)|
          Length = 574

 Score = 29.6 bits (65), Expect = 3.5
 Identities = 21/65 (32%), Positives = 28/65 (43%)
 Frame = -3

Query: 320 GDAEAEAVGDGLGDVVGERRELRLHGPQLRRHRRGLPAGGPGEQSEREQQEGHGEGCARP 141
           G+   +  GD +G +  E RE R    Q R   R  P GG    S   +++G   G A  
Sbjct: 403 GEEADDEAGDSVGTIFREAREQRAAEEQRRGGGRSGPGGGSRSGSGGGRRDGASAG-ADG 461

Query: 140 PPVPR 126
            P PR
Sbjct: 462 KPRPR 466

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>ENH1_PANTR (P61559) ERV-H1 provirus ancestral Env polyprotein precursor|
           (Envelope polyprotein) (Env protein) (ERV-H/env62)
           [Contains: Surface protein (SU); Transmembrane protein
           (TM)]
          Length = 457

 Score = 29.6 bits (65), Expect = 3.5
 Identities = 15/42 (35%), Positives = 20/42 (47%)
 Frame = +2

Query: 32  LRCLSPCPWLPPQCQPIPAAALPPRNARCRALAVPAAGERSL 157
           L C+S  PWLP  C    ++  PPR + C  +  P     SL
Sbjct: 233 LPCISLHPWLPSPC----SSDCPPRPSSCLLIPSPENNSESL 270

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>WEE1_MOUSE (P47810) Wee1-like protein kinase (EC 2.7.10.2)|
          Length = 646

 Score = 29.6 bits (65), Expect = 3.5
 Identities = 23/77 (29%), Positives = 31/77 (40%), Gaps = 13/77 (16%)
 Frame = -3

Query: 206 GGPGEQSEREQQEGHGEGCARPP-------PVPRALCIAHSEAEEQRR------GWAGTA 66
           G   E+ E E++EG G              P+P A   A +EAE +RR         G  
Sbjct: 30  GSDCEEEEEEEEEGSGHSTGEDSAFQEPDSPLPSARSPAEAEAERRRRSPGAEPSSPGEL 89

Query: 65  EGAKDKERGSGGAKETG 15
           E     + G GGA+  G
Sbjct: 90  EDDLLLQGGGGGAQAAG 106

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>Y462_TREPA (O83475) Hypothetical lipoprotein TP0462/TP0463 precursor|
          Length = 392

 Score = 29.3 bits (64), Expect = 4.5
 Identities = 19/71 (26%), Positives = 28/71 (39%)
 Frame = -3

Query: 227 HRRGLPAGGPGEQSEREQQEGHGEGCARPPPVPRALCIAHSEAEEQRRGWAGTAEGAKDK 48
           H R + A G G  +      G    C     V   LCIAH +  +      G ++G K+ 
Sbjct: 235 HCRTVQASGGGNGAHCAVASGSATSCKVAHTVTNPLCIAHVKNGQTEFLLIGGSQGYKEI 294

Query: 47  ERGSGGAKETG 15
           +  +G    TG
Sbjct: 295 KLETGSGSGTG 305

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>TEGU_EBV (P03186) Large tegument protein|
          Length = 3149

 Score = 29.3 bits (64), Expect = 4.5
 Identities = 16/33 (48%), Positives = 19/33 (57%)
 Frame = +2

Query: 17  PSPSLLRCLSPCPWLPPQCQPIPAAALPPRNAR 115
           P PS  R  SP   LPPQ QP+P+A   P  A+
Sbjct: 579 PPPSAARAPSP---LPPQQQPLPSATPAPPPAQ 608

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>CLIC6_HUMAN (Q96NY7) Chloride intracellular channel 6|
          Length = 704

 Score = 29.3 bits (64), Expect = 4.5
 Identities = 21/61 (34%), Positives = 28/61 (45%), Gaps = 3/61 (4%)
 Frame = -3

Query: 188 SEREQQEGHGEGCARPPPVPRALCIAHSE---AEEQRRGWAGTAEGAKDKERGSGGAKET 18
           +E  + EG   G   PP VP  L     E   A  +  G  G+ EGA++  RG+   KE 
Sbjct: 2   AEAAEPEGVAPGPQGPPEVPAPLAERPGEPGAAGGEAEGPEGS-EGAEEAPRGAAAVKEA 60

Query: 17  G 15
           G
Sbjct: 61  G 61

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>T2_MOUSE (Q06666) Octapeptide-repeat protein T2|
          Length = 185

 Score = 29.3 bits (64), Expect = 4.5
 Identities = 25/86 (29%), Positives = 36/86 (41%), Gaps = 1/86 (1%)
 Frame = -3

Query: 269 ERRELRLHGPQLRRHRRGLPAGGP-GEQSEREQQEGHGEGCARPPPVPRALCIAHSEAEE 93
           ER+  R  G ++ RHRRG  A    G + E E+Q G                 A  EAE 
Sbjct: 69  ERQRGRERGREVERHRRGREAERQRGREREAERQRGRE---------------AEREAER 113

Query: 92  QRRGWAGTAEGAKDKERGSGGAKETG 15
           QR       E  ++++RG    ++ G
Sbjct: 114 QR-------ERQRERQRGREAERQRG 132

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>IF2_PROAC (Q6A7M5) Translation initiation factor IF-2|
          Length = 964

 Score = 29.3 bits (64), Expect = 4.5
 Identities = 21/78 (26%), Positives = 32/78 (41%), Gaps = 1/78 (1%)
 Frame = -3

Query: 245 GPQLRRHRRGLPAGGPGE-QSEREQQEGHGEGCARPPPVPRALCIAHSEAEEQRRGWAGT 69
           G    R   G  +GG    Q ER  + G  +G      +PR       + +  + G A T
Sbjct: 224 GQSRHRSEGGQRSGGSRSGQGERMPRPGGSQGSRGGSGMPRPNPAMMPKHQSSQIGQATT 283

Query: 68  AEGAKDKERGSGGAKETG 15
             G +   RG GG++ +G
Sbjct: 284 GRGGRGGGRGRGGSRGSG 301

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>CAC1A_MOUSE (P97445) Voltage-dependent P/Q-type calcium channel alpha-1A subunit|
            (Voltage-gated calcium channel alpha subunit Cav2.1)
            (Calcium channel, L type, alpha-1 polypeptide isoform 4)
            (Brain calcium channel I) (BI)
          Length = 2164

 Score = 29.3 bits (64), Expect = 4.5
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = -3

Query: 245  GPQLRRHRRGLPAGGPGEQSEREQQEGHGEG 153
            G + RRHR G PA    E+  R ++E  G G
Sbjct: 916  GERKRRHRHGPPAHDDRERRHRRRKENQGSG 946

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>RS13_THEFY (Q47LL9) 30S ribosomal protein S13|
          Length = 126

 Score = 29.3 bits (64), Expect = 4.5
 Identities = 18/52 (34%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
 Frame = -3

Query: 317 DAEAEAVGDGLGDVVGE-RRELRLHGPQLRRHRRGLPAGGPGEQSEREQQEG 165
           DA  +  GD   +V  + RR++ +   Q  RHRRGLP  G   Q+    ++G
Sbjct: 61  DANYKVEGDLRREVAADIRRKIEIGCYQGIRHRRGLPVRGQRTQTNARTRKG 112

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>PER_DROTP (P91716) Period circadian protein (Fragment)|
          Length = 390

 Score = 29.3 bits (64), Expect = 4.5
 Identities = 23/76 (30%), Positives = 32/76 (42%), Gaps = 9/76 (11%)
 Frame = -3

Query: 227 HRRGLPAGGP----GEQSEREQQ-----EGHGEGCARPPPVPRALCIAHSEAEEQRRGWA 75
           H  G+  GG     GE ++ +QQ      G G G      +P  L I H+ +  Q +G A
Sbjct: 173 HGHGIKRGGSHSWEGEANKPKQQLTLNPSGGGGG------MPLLLDITHTSSSTQNKGLA 226

Query: 74  GTAEGAKDKERGSGGA 27
           G   G      G GG+
Sbjct: 227 GVGVGGAGGGVGGGGS 242

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>SAFB2_HUMAN (Q14151) Scaffold attachment factor B2|
          Length = 953

 Score = 29.3 bits (64), Expect = 4.5
 Identities = 26/80 (32%), Positives = 33/80 (41%), Gaps = 5/80 (6%)
 Frame = -3

Query: 248  HGPQLRRHRRGLPAGGPGEQSEREQQEGHGEGCARPPPVPRALCIAHSE--AEEQRRGWA 75
            HG    RH R    G  G  S++   EG G     PPP        H++   E Q R W 
Sbjct: 807  HGGPPERHGRDSRDGWGGYGSDKRLSEGRG---LPPPPRGGRDWGEHNQRLEEHQARAWQ 863

Query: 74   GTAE-GAKDKE--RGSGGAK 24
            G  + GA  +E  R  GG +
Sbjct: 864  GAMDAGAASREHARWQGGER 883

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>RHLB_XYLFA (Q9PA24) ATP-dependent RNA helicase rhlB (EC 3.6.1.-)|
          Length = 543

 Score = 29.3 bits (64), Expect = 4.5
 Identities = 16/42 (38%), Positives = 20/42 (47%)
 Frame = -3

Query: 305 EAVGDGLGDVVGERRELRLHGPQLRRHRRGLPAGGPGEQSER 180
           E   +G GD VG+     L     +  RRG P G PGE+  R
Sbjct: 397 ERASNGNGDTVGDISPHSLDVLVAQEWRRGKPRGSPGERDGR 438

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>KIF3B_HUMAN (O15066) Kinesin-like protein KIF3B (Microtubule plus end-directed|
           kinesin motor 3B) (HH0048)
          Length = 747

 Score = 29.3 bits (64), Expect = 4.5
 Identities = 17/38 (44%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
 Frame = -3

Query: 260 ELRLHGPQLRRHRR--GLPAGGPGEQSEREQQEGHGEG 153
           E R  G + RR +R  G  +GG GE+ E E +EG  EG
Sbjct: 370 EKRSIGRRKRREKRREGGGSGGGGEEEEEEGEEGEEEG 407

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>VASP_MOUSE (P70460) Vasodilator-stimulated phosphoprotein (VASP)|
          Length = 374

 Score = 29.3 bits (64), Expect = 4.5
 Identities = 21/66 (31%), Positives = 23/66 (34%), Gaps = 5/66 (7%)
 Frame = -3

Query: 212 PAGGPGEQSEREQQEGHGEGCARPPPVPRALCIAHSEAEEQRRGWAGTAEGAK-----DK 48
           P   PG  S      GHG G A PP  P       +       G A    GAK      +
Sbjct: 177 PPPPPGLPSSGVSGAGHGAGAAPPPAPPLPTAQGPNSGGSGAPGLAAAIAGAKLRKVSKQ 236

Query: 47  ERGSGG 30
           E  SGG
Sbjct: 237 EEASGG 242

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>TNR21_MOUSE (Q9EPU5) Tumor necrosis factor receptor superfamily member 21|
           precursor (TNFR-related death receptor 6) (Death
           receptor 6)
          Length = 655

 Score = 29.3 bits (64), Expect = 4.5
 Identities = 12/27 (44%), Positives = 14/27 (51%)
 Frame = +2

Query: 38  CLSPCPWLPPQCQPIPAAALPPRNARC 118
           C  PCPW  P  + +P AAL  R   C
Sbjct: 109 CSQPCPW--PMIERLPCAALTDRECIC 133

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>ADA2B_CAVPO (Q60475) Alpha-2B adrenergic receptor (Alpha-2B adrenoceptor)|
           (Alpha-2B adrenoreceptor)
          Length = 448

 Score = 29.3 bits (64), Expect = 4.5
 Identities = 24/77 (31%), Positives = 35/77 (45%), Gaps = 3/77 (3%)
 Frame = -3

Query: 257 LRLHGPQLRRHRRGLPA-GGPGEQSEREQQ--EGHGEGCARPPPVPRALCIAHSEAEEQR 87
           LR++    R HRRG  A GGPGE   +E +   G     A+ PP+   L  +  EA    
Sbjct: 192 LRIYLIAKRSHRRGPRAKGGPGEGESKESRPSPGGAPASAKVPPLASPLS-STGEANGHP 250

Query: 86  RGWAGTAEGAKDKERGS 36
           +      EG   ++ G+
Sbjct: 251 KPTGEKEEGETSEDPGA 267

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>ACE2_PAGLA (Q56NL1) Angiotensin-converting enzyme 2 precursor (EC 3.4.17.-)|
           (ACE-related carboxypeptidase)
          Length = 805

 Score = 28.9 bits (63), Expect = 5.9
 Identities = 14/47 (29%), Positives = 25/47 (53%), Gaps = 2/47 (4%)
 Frame = +3

Query: 225 VPPELRAVEAQLTALTNDVAQT--ISDRFSFCVSDTQEDWNGAFNYT 359
           V  +LR +  +  AL N++A+     D   +   D +E+W G +NY+
Sbjct: 172 VGKQLRPLYEEYVALKNEMARANNYEDYGDYWRGDYEEEWTGGYNYS 218

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>VE4_HPV05 (P06924) Probable protein E4|
          Length = 245

 Score = 28.9 bits (63), Expect = 5.9
 Identities = 30/89 (33%), Positives = 35/89 (39%), Gaps = 3/89 (3%)
 Frame = -3

Query: 272 GERRELRLHGPQLRRHRRGLPAGGPGEQSEREQQEGHGEGCARPPPVPRALCIAHSEAE- 96
           G RR  RL   Q  R     P  GP   +E E +   G     PPP P A    HS  E 
Sbjct: 109 GPRRSPRLGPLQADRD----PEEGPQPPAEGEVEGHPGGDQGHPPPPPPAPHNGHSGHEP 164

Query: 95  --EQRRGWAGTAEGAKDKERGSGGAKETG 15
             +Q  G  G  EG ++   G  G  E G
Sbjct: 165 KVQQPEGPEG-REGHEEGAVGGEGGDEEG 192

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>L52_ADEG1 (Q64753) Late L1 52 kDa protein|
          Length = 378

 Score = 28.9 bits (63), Expect = 5.9
 Identities = 20/59 (33%), Positives = 26/59 (44%), Gaps = 2/59 (3%)
 Frame = -3

Query: 209 AGGPGEQSEREQQEGHGEGCARPPPVPRALCIAHS--EAEEQRRGWAGTAEGAKDKERG 39
           AGGP +Q  + QQ+ HG    R PP P      H+   A        G  +GA D + G
Sbjct: 15  AGGPHQQ--QPQQQQHGVSSVRRPPSPPRYPAQHAYPGAGATPTAGRGDFDGALDPDEG 71

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>RM03_CAEEL (P49404) Putative mitochondrial 39S ribosomal protein L3|
          Length = 403

 Score = 28.9 bits (63), Expect = 5.9
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = +2

Query: 2   SFHFTPSPSLLRCLSPCPWLPPQCQPIPAAAL 97
           S H +      R L+P PWLPP  + +P +++
Sbjct: 26  SGHISQQRGRRRTLTPAPWLPPVKESVPKSSV 57

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>METE_MYCTU (P65340) 5-methyltetrahydropteroyltriglutamate--homocysteine|
           methyltransferase (EC 2.1.1.14) (Methionine synthase,
           vitamin-B12 independent isozyme) (Cobalamin-independent
           methionine synthase)
          Length = 759

 Score = 28.9 bits (63), Expect = 5.9
 Identities = 19/90 (21%), Positives = 34/90 (37%)
 Frame = -3

Query: 317 DAEAEAVGDGLGDVVGERRELRLHGPQLRRHRRGLPAGGPGEQSEREQQEGHGEGCARPP 138
           DA A+ +      +   +R+ RLH  Q+R     + A G   +    Q+    +     P
Sbjct: 372 DAVADEIASSRAAIASRKRDPRLHNGQIRARIEAIVASG-AHRGNAAQRRASQDARLHLP 430

Query: 137 PVPRALCIAHSEAEEQRRGWAGTAEGAKDK 48
           P+P     ++ +    R   A    G  D+
Sbjct: 431 PLPTTTIGSYPQTSAIRVARAALRAGEIDE 460

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>METE_MYCBO (P65341) 5-methyltetrahydropteroyltriglutamate--homocysteine|
           methyltransferase (EC 2.1.1.14) (Methionine synthase,
           vitamin-B12 independent isozyme) (Cobalamin-independent
           methionine synthase)
          Length = 759

 Score = 28.9 bits (63), Expect = 5.9
 Identities = 19/90 (21%), Positives = 34/90 (37%)
 Frame = -3

Query: 317 DAEAEAVGDGLGDVVGERRELRLHGPQLRRHRRGLPAGGPGEQSEREQQEGHGEGCARPP 138
           DA A+ +      +   +R+ RLH  Q+R     + A G   +    Q+    +     P
Sbjct: 372 DAVADEIASSRAAIASRKRDPRLHNGQIRARIEAIVASG-AHRGNAAQRRASQDARLHLP 430

Query: 137 PVPRALCIAHSEAEEQRRGWAGTAEGAKDK 48
           P+P     ++ +    R   A    G  D+
Sbjct: 431 PLPTTTIGSYPQTSAIRVARAALRAGEIDE 460

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>WNK2_HUMAN (Q9Y3S1) Serine/threonine-protein kinase WNK2 (EC 2.7.11.1) (Protein|
            kinase with no lysine 2) (Protein kinase,
            lysine-deficient 2)
          Length = 2297

 Score = 28.5 bits (62), Expect = 7.7
 Identities = 12/32 (37%), Positives = 18/32 (56%), Gaps = 2/32 (6%)
 Frame = +2

Query: 47   PCPWLPPQCQPIPAAALPPRNAR--CRALAVP 136
            P P  P    P+P ++LPP  ++  CR L +P
Sbjct: 1322 PAPEAPESSPPLPLSSLPPEASQGPCRGLTLP 1353

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>MYO9B_MOUSE (Q9QY06) Myosin-9B (Myosin IXb) (Unconventional myosin-9b)|
          Length = 2114

 Score = 28.5 bits (62), Expect = 7.7
 Identities = 14/30 (46%), Positives = 18/30 (60%)
 Frame = +2

Query: 17   PSPSLLRCLSPCPWLPPQCQPIPAAALPPR 106
            P+P+L     PCP + P   P+P AA PPR
Sbjct: 1979 PAPAL-----PCP-ISPTLSPLPEAAAPPR 2002

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>GCM2_MOUSE (O09102) Chorion-specific transcription factor GCMb (Glial cells|
           missing homolog 2) (GCM motif protein 2) (mGCMb)
          Length = 504

 Score = 28.5 bits (62), Expect = 7.7
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = +2

Query: 68  QCQPIPAAALPPRNARCRALAVPAAGERSL 157
           QCQ +P +        CR L VPAAG ++L
Sbjct: 350 QCQAVPTSPYYNLELPCRYLPVPAAGTQAL 379

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>GAS6_HUMAN (Q14393) Growth-arrest-specific protein 6 precursor (GAS-6)|
          Length = 721

 Score = 28.5 bits (62), Expect = 7.7
 Identities = 20/64 (31%), Positives = 27/64 (42%), Gaps = 1/64 (1%)
 Frame = -3

Query: 260 ELRLHGPQLRRHRRGLPAGGPGEQSEREQQEGHGEGCARPPPVPRAL-CIAHSEAEEQRR 84
           EL    P  R  R G PA  PG  ++  + EGH      P P    L C+  S A+  + 
Sbjct: 278 ELEAGWPCPRHRRDGSPAARPGRGAQGSRSEGHIPDRRGPRPWQDILPCVPFSVAKSVKS 337

Query: 83  GWAG 72
            + G
Sbjct: 338 LYLG 341


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 36,789,259
Number of Sequences: 219361
Number of extensions: 691109
Number of successful extensions: 4741
Number of sequences better than 10.0: 55
Number of HSP's better than 10.0 without gapping: 4218
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4701
length of database: 80,573,946
effective HSP length: 101
effective length of database: 58,418,485
effective search space used: 2628831825
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result