ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl08d09 |
|---|---|
| Clone Library Name | barley_pub |
>ALR_HUMAN (P55789) Augmenter of liver regeneration (hERV1 protein)| Length = 125 Score = 33.9 bits (76), Expect = 0.19 Identities = 21/55 (38%), Positives = 22/55 (40%), Gaps = 15/55 (27%) Frame = -2 Query: 253 LLANCGDKLARAC-CHWQCH--------------SCCLSKLIETWRGGWMDGCCD 134 L N D RAC W CH C SK+ E WR GW DG CD Sbjct: 73 LCRNHPDTRTRACFTQWLCHLHNEVNRKLGKPDFDC--SKVDERWRDGWKDGSCD 125
>INO80_ASPFU (Q4WTV7) Putative DNA helicase ino80 (EC 3.6.1.-)| Length = 1708 Score = 30.8 bits (68), Expect = 1.6 Identities = 24/88 (27%), Positives = 44/88 (50%), Gaps = 1/88 (1%) Frame = -1 Query: 416 RQLREALRESKASASPCNASPCPLPLAPPMDSRRKTKKGSKAKGCRA-SIWPIILAACEL 240 ++ ++A +++ +A + PLPLAP D R++T K +AKG R+ P ++A E Sbjct: 524 KEQKQAEKDAAEAAYAAMENDEPLPLAPKEDPRKETVK-KEAKGARSKETTPAPVSAFES 582 Query: 239 WRQTS*SMLPLAMPFLLFEQAYRDLERR 156 ++EQ +RD+ R+ Sbjct: 583 KGYNQ-----------IYEQIWRDIARK 599
>PER3_HUMAN (P56645) Period circadian protein 3 (hPER3)| Length = 1201 Score = 30.4 bits (67), Expect = 2.1 Identities = 14/41 (34%), Positives = 23/41 (56%) Frame = +3 Query: 87 FLHAFAVPSIYPSTSLSQHPSIHPPLQVSISLLKQQEWHCQ 209 FL A A +I PS S + P++ PP V+ ++++W Q Sbjct: 870 FLGATASSAISPSMSSAMSPTLDPPPSVTSQRREEEKWEAQ 910
>HXA2_HETFR (Q9IA20) Homeobox protein Hox-A2| Length = 363 Score = 30.0 bits (66), Expect = 2.8 Identities = 20/56 (35%), Positives = 25/56 (44%) Frame = -1 Query: 395 RESKASASPCNASPCPLPLAPPMDSRRKTKKGSKAKGCRASIWPIILAACELWRQT 228 R+S+ SP SP P PP K KK SK AS P A+C ++T Sbjct: 66 RQSRPKQSPNGTSPLPAATLPPEYPWMKEKKNSKKNHLPASSGP--AASCLSQKET 119
>ALR_RAT (Q63042) Augmenter of liver regeneration| Length = 125 Score = 29.6 bits (65), Expect = 3.6 Identities = 10/17 (58%), Positives = 12/17 (70%) Frame = -2 Query: 184 SKLIETWRGGWMDGCCD 134 S++ E WR GW DG CD Sbjct: 109 SRVDERWRDGWKDGSCD 125
>ALR_MOUSE (P56213) Augmenter of liver regeneration| Length = 125 Score = 29.6 bits (65), Expect = 3.6 Identities = 10/17 (58%), Positives = 12/17 (70%) Frame = -2 Query: 184 SKLIETWRGGWMDGCCD 134 S++ E WR GW DG CD Sbjct: 109 SRVDERWRDGWKDGSCD 125
>UBP53_MOUSE (P15975) Inactive ubiquitin carboxyl-terminal hydrolase 53| (Ubiquitin-specific peptidase 53) (Per-hexamer repeat protein 3) Length = 1069 Score = 29.3 bits (64), Expect = 4.7 Identities = 20/63 (31%), Positives = 33/63 (52%), Gaps = 1/63 (1%) Frame = +3 Query: 108 PSIYPSTSLSQHPSIHPPLQVSISLLKQQEWHC-QWQHALASLSPQFASSKNYRPDGGST 284 PS P SLS P+ P L+ S + ++++ Q + A+ P S+ +++PD ST Sbjct: 953 PSSLPKHSLS--PASGPSLEGSPCMTQERDKETIQVKQLAANSYPSSCSTNSFQPDQDST 1010 Query: 285 SFC 293 S C Sbjct: 1011 SVC 1013
>OAR2_LOCMI (Q25322) Putative tyramine receptor 2 (Tyr-Loc2)| Length = 484 Score = 29.3 bits (64), Expect = 4.7 Identities = 16/36 (44%), Positives = 22/36 (61%), Gaps = 1/36 (2%) Frame = -1 Query: 392 ESKASASPCNASPCPLPLAPPM-DSRRKTKKGSKAK 288 + ++ +S N + P P APP + RRKTKK SK K Sbjct: 272 DQESVSSETNHNELPPPPAPPSKEKRRKTKKKSKKK 307
>OAR1_LOCMI (Q25321) Tyramine receptor 1 (Tyr-Loc1)| Length = 484 Score = 29.3 bits (64), Expect = 4.7 Identities = 16/36 (44%), Positives = 22/36 (61%), Gaps = 1/36 (2%) Frame = -1 Query: 392 ESKASASPCNASPCPLPLAPPM-DSRRKTKKGSKAK 288 + ++ +S N + P P APP + RRKTKK SK K Sbjct: 272 DQESVSSETNHNELPPPPAPPSKEKRRKTKKKSKKK 307
>VGLB_HSVA1 (Q04463) Glycoprotein B precursor| Length = 933 Score = 28.9 bits (63), Expect = 6.2 Identities = 15/35 (42%), Positives = 19/35 (54%) Frame = -1 Query: 446 PGNHERNTWGRQLREALRESKASASPCNASPCPLP 342 PGN R+ RQLRE+LR +A + CP P Sbjct: 105 PGNGTRSAARRQLRESLRRIQAEYAASAFYVCPPP 139
>POLR_OYMV (P20127) RNA replicase polyprotein (EC 2.7.7.48)| Length = 1776 Score = 28.9 bits (63), Expect = 6.2 Identities = 22/87 (25%), Positives = 36/87 (41%) Frame = +3 Query: 6 REHIPLPSTFGVKLTPLASIFM*SFSRFLHAFAVPSIYPSTSLSQHPSIHPPLQVSISLL 185 +EH+P G+ + F H AV + + L H S +Q S+ + Sbjct: 44 KEHLPFLLAAGIPTS--------GFGCNPHPHAVHKVIETFLLFNHWSFMATVQASVMFM 95 Query: 186 KQQEWHCQWQHALASLSPQFASSKNYR 266 K ++ LAS++P F+ NYR Sbjct: 96 KPSKFK-----KLASVNPNFSELVNYR 117
>DRD2L_FUGRU (P53453) D(2)-like dopamine receptor| Length = 463 Score = 28.9 bits (63), Expect = 6.2 Identities = 12/40 (30%), Positives = 20/40 (50%) Frame = -1 Query: 377 ASPCNASPCPLPLAPPMDSRRKTKKGSKAKGCRASIWPII 258 ++ NASP P PP + +R K G K + + P++ Sbjct: 324 STKANASPTSTPPTPPEEGQRTEKNGDPTKEAQGNPAPVV 363
>CO6_RAT (Q811M5) Complement component C6 precursor| Length = 934 Score = 28.9 bits (63), Expect = 6.2 Identities = 11/21 (52%), Positives = 14/21 (66%) Frame = -1 Query: 410 LREALRESKASASPCNASPCP 348 LR+AL+E A PC +PCP Sbjct: 507 LRKALQEYAAKFDPCQCAPCP 527
>CO6_PANTR (P61134) Complement component C6 precursor| Length = 934 Score = 28.9 bits (63), Expect = 6.2 Identities = 11/21 (52%), Positives = 14/21 (66%) Frame = -1 Query: 410 LREALRESKASASPCNASPCP 348 LR+AL+E A PC +PCP Sbjct: 507 LRKALQEYAAKFDPCQCAPCP 527
>CO6_HUMAN (P13671) Complement component C6 precursor| Length = 934 Score = 28.9 bits (63), Expect = 6.2 Identities = 11/21 (52%), Positives = 14/21 (66%) Frame = -1 Query: 410 LREALRESKASASPCNASPCP 348 LR+AL+E A PC +PCP Sbjct: 507 LRKALQEYAAKFDPCQCAPCP 527
>INO80_EMENI (Q5BAZ5) Putative DNA helicase ino80 (EC 3.6.1.-)| Length = 1612 Score = 28.5 bits (62), Expect = 8.1 Identities = 19/67 (28%), Positives = 26/67 (38%), Gaps = 4/67 (5%) Frame = +3 Query: 120 PSTSLSQHPSIHPPLQVSISLLKQQEWHCQWQHALASLS----PQFASSKNYRPDGGSTS 287 PST HPS P +S K+ E H H + S PQ + K +P + Sbjct: 122 PSTPSHAHPSSRPDSHAHVSPKKEPESHFAVNHGAPAYSVMREPQASPPKEAKPARAADP 181 Query: 288 FCLAPLL 308 A +L Sbjct: 182 MSFASIL 188
>JIL1_DROME (Q9V3I5) Chromosomal serine/threonine-protein kinase JIL-1 (EC| 2.7.11.1) Length = 1207 Score = 28.5 bits (62), Expect = 8.1 Identities = 15/38 (39%), Positives = 23/38 (60%) Frame = -1 Query: 128 GRWVDRGNGKGMQES*EASHENGGERRELHTEGGGEGN 15 G+ V GNGK + S + NG ++ +L+TEG G G+ Sbjct: 47 GQLVANGNGKTRKNSNSETMTNG-KKSKLNTEGSGSGS 83 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 66,687,686 Number of Sequences: 219361 Number of extensions: 1396498 Number of successful extensions: 5055 Number of sequences better than 10.0: 17 Number of HSP's better than 10.0 without gapping: 4831 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5045 length of database: 80,573,946 effective HSP length: 102 effective length of database: 58,199,124 effective search space used: 2735358828 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
