>U202A_ARATH (Q9XIK4) Hypothetical UPF0202 protein At1g10490|
          Length = 1058

 Score =  181 bits (459), Expect(2) = 2e-48
 Identities = 83/114 (72%), Positives = 103/114 (90%)
 Frame = +3

Query: 66  KKVDERIRTLIENGVRQRQRSMFIIVGDKSRDQIVNLNYMLAKSRVKSRPSVLWCYRNKL 245
           KKVDERIRTLIENGV+ R RSMF+I+GDK+RDQIVNL+++L+KS VKS PSVLWCY+N+L
Sbjct: 3   KKVDERIRTLIENGVKLRHRSMFVIIGDKARDQIVNLHHILSKSVVKSNPSVLWCYKNRL 62

Query: 246 EISSHRKKRAKQIKKLMQRGLMDPEKADPFSLFLETSDITYCMYKDSERVLGNT 407
           +ISSH KKRAKQ+KK+ +RG +DPEK D FSLFL+  D+T+C+YKDSER+LGNT
Sbjct: 63  DISSHNKKRAKQLKKMKERGQLDPEKLDAFSLFLDVVDVTHCLYKDSERILGNT 116



 Score = 30.0 bits (66), Expect(2) = 2e-48
 Identities = 12/13 (92%), Positives = 13/13 (100%)
 Frame = +2

Query: 410 GMCILQDFEALTP 448
           G+CILQDFEALTP
Sbjct: 118 GICILQDFEALTP 130

>U202B_ARATH (Q9M2Q4) Hypothetical UPF0202 protein At3g57940|
          Length = 1024

 Score =  170 bits (431), Expect(2) = 1e-45
 Identities = 77/114 (67%), Positives = 100/114 (87%)
 Frame = +3

Query: 66  KKVDERIRTLIENGVRQRQRSMFIIVGDKSRDQIVNLNYMLAKSRVKSRPSVLWCYRNKL 245
           KKVDERIRTLIENGV+ R RSMF+I+GDKSRDQIVNL++ML+K+ +K  PSVLWCY++KL
Sbjct: 3   KKVDERIRTLIENGVKLRHRSMFVIIGDKSRDQIVNLHHMLSKAVIKCNPSVLWCYKDKL 62

Query: 246 EISSHRKKRAKQIKKLMQRGLMDPEKADPFSLFLETSDITYCMYKDSERVLGNT 407
           +ISSH++KR+KQ+K+L +RG +DPEK D FS  L+   +T+C+YKDSER+LGNT
Sbjct: 63  DISSHKQKRSKQLKRLRERGQLDPEKLDAFSRLLDVGRVTHCLYKDSERILGNT 116



 Score = 31.6 bits (70), Expect(2) = 1e-45
 Identities = 13/13 (100%), Positives = 13/13 (100%)
 Frame = +2

Query: 410 GMCILQDFEALTP 448
           GMCILQDFEALTP
Sbjct: 118 GMCILQDFEALTP 130

>ALP_HUMAN (Q9H0A0) N-acetyltransferase-like protein (EC 2.3.1.-)|
          Length = 1025

 Score =  143 bits (360), Expect(2) = 2e-37
 Identities = 62/114 (54%), Positives = 92/114 (80%)
 Frame = +3

Query: 66  KKVDERIRTLIENGVRQRQRSMFIIVGDKSRDQIVNLNYMLAKSRVKSRPSVLWCYRNKL 245
           KKVD RIR LIENGV +RQRS+F++VGD+ +DQ+V L++ML+K+ VK+RPSVLWCY+ +L
Sbjct: 4   KKVDNRIRILIENGVAERQRSLFVVVGDRGKDQVVILHHMLSKATVKARPSVLWCYKKEL 63

Query: 246 EISSHRKKRAKQIKKLMQRGLMDPEKADPFSLFLETSDITYCMYKDSERVLGNT 407
             SSHRKKR +Q++K ++ G ++ ++ DPF LF+  ++I YC Y ++ ++LGNT
Sbjct: 64  GFSSHRKKRMRQLQKKIKNGTLNIKQDDPFELFIAATNIRYCYYNETHKILGNT 117



 Score = 31.2 bits (69), Expect(2) = 2e-37
 Identities = 12/13 (92%), Positives = 13/13 (100%)
 Frame = +2

Query: 410 GMCILQDFEALTP 448
           GMC+LQDFEALTP
Sbjct: 119 GMCVLQDFEALTP 131

>YDK9_SCHPO (P87115) Hypothetical UPF0202 protein C20G8.09c in chromosome I|
          Length = 1033

 Score =  134 bits (336), Expect(2) = 1e-33
 Identities = 60/115 (52%), Positives = 90/115 (78%), Gaps = 1/115 (0%)
 Frame = +3

Query: 66  KKVDERIRTLIENGVRQRQRSMFIIVGDKSRDQIVNLNYMLAKSRVKSRPSVLWCY-RNK 242
           K +D RI TLI+NG +++QRS F++VGD++RDQ+VNL+++L++S+V +RP+VLW Y ++ 
Sbjct: 4   KALDSRIPTLIKNGCQEKQRSFFVVVGDRARDQVVNLHWLLSQSKVAARPNVLWMYKKDL 63

Query: 243 LEISSHRKKRAKQIKKLMQRGLMDPEKADPFSLFLETSDITYCMYKDSERVLGNT 407
           L  +SHRKKR  +IKK ++RG+ DP   DPF LF   ++I YC YK+SE++LG T
Sbjct: 64  LGFTSHRKKRENKIKKEIKRGIRDPNSEDPFELFCSITNIRYCYYKESEKILGQT 118



 Score = 28.1 bits (61), Expect(2) = 1e-33
 Identities = 12/16 (75%), Positives = 13/16 (81%)
 Frame = +2

Query: 401 QHVGMCILQDFEALTP 448
           Q  GM +LQDFEALTP
Sbjct: 117 QTYGMLVLQDFEALTP 132

>YNN2_YEAST (P53914) Hypothetical UPF0202 protein YNL132w|
          Length = 1056

 Score =  117 bits (294), Expect(2) = 7e-30
 Identities = 55/115 (47%), Positives = 82/115 (71%), Gaps = 1/115 (0%)
 Frame = +3

Query: 66  KKVDERIRTLIENGVRQRQRSMFIIVGDKSRDQIVNLNYMLAKSRVKSRPSVLWCYRNK- 242
           K +D RI +LI NGV+ +QRS+F+IVGD++R+Q+ NL+Y++  + +K   SVLW Y+ K 
Sbjct: 4   KAIDSRIPSLIRNGVQTKQRSIFVIVGDRARNQLPNLHYLMMSADLKMNKSVLWAYKKKL 63

Query: 243 LEISSHRKKRAKQIKKLMQRGLMDPEKADPFSLFLETSDITYCMYKDSERVLGNT 407
           L  +SHRKKR  +IKK ++RG  +  + DPF  F+   +I Y  YK+SE++LGNT
Sbjct: 64  LGFTSHRKKRENKIKKEIKRGTREVNEMDPFESFISNQNIRYVYYKESEKILGNT 118



 Score = 31.6 bits (70), Expect(2) = 7e-30
 Identities = 13/13 (100%), Positives = 13/13 (100%)
 Frame = +2

Query: 410 GMCILQDFEALTP 448
           GMCILQDFEALTP
Sbjct: 120 GMCILQDFEALTP 132

>YIL8_CAEEL (O01757) Hypothetical UPF0202 protein F55A12.8 in chromosome I|
          Length = 1043

 Score =  122 bits (305), Expect(2) = 3e-29
 Identities = 57/113 (50%), Positives = 80/113 (70%)
 Frame = +3

Query: 69  KVDERIRTLIENGVRQRQRSMFIIVGDKSRDQIVNLNYMLAKSRVKSRPSVLWCYRNKLE 248
           K+D RIRT IENGV    RSMF +VGDK+RDQ+  L ++L+KS V +RP+VLWCY+ +L 
Sbjct: 4   KLDGRIRTQIENGVASGHRSMFAVVGDKARDQVPILYHILSKSTVSARPNVLWCYKKELS 63

Query: 249 ISSHRKKRAKQIKKLMQRGLMDPEKADPFSLFLETSDITYCMYKDSERVLGNT 407
            S+HR K+AK++KK           ADPF +F+ ++ I YC Y ++E++LGNT
Sbjct: 64  FSTHRAKKAKKMKKATTTISGSLPDADPFDVFISSTQIRYCYYNETEKILGNT 116



 Score = 25.0 bits (53), Expect(2) = 3e-29
 Identities = 9/13 (69%), Positives = 12/13 (92%)
 Frame = +2

Query: 410 GMCILQDFEALTP 448
           G+ +LQDFEA+TP
Sbjct: 118 GVLVLQDFEAMTP 130

>U202_DROME (Q9W3C1) Polycomb protein l(1)G0020 (p110 protein)|
          Length = 1008

 Score =  105 bits (261), Expect(2) = 1e-25
 Identities = 58/115 (50%), Positives = 77/115 (66%), Gaps = 1/115 (0%)
 Frame = +3

Query: 66  KKVDERIRTLIENGVRQRQRSMFIIVGDKSRDQIVNLNYMLAKSRVKSRPSVLWCYRNKL 245
           KK+D RIR +IENGV+   R+MFI++GDK+RDQ+  L  +L KS VK+RP+VLWCY+NK 
Sbjct: 4   KKIDNRIRVMIENGVKLGHRTMFIVIGDKARDQVPILYDILTKSTVKARPTVLWCYKNKD 63

Query: 246 E-ISSHRKKRAKQIKKLMQRGLMDPEKADPFSLFLETSDITYCMYKDSERVLGNT 407
           E IS+H KKRAK+I      G +D  +AD F  F   + I    Y ++  VLG T
Sbjct: 64  EAISNHGKKRAKKIAV----GKVDVNEADLFDSFRVATTIHGRYYSETHAVLGRT 114



 Score = 29.6 bits (65), Expect(2) = 1e-25
 Identities = 11/13 (84%), Positives = 13/13 (100%)
 Frame = +2

Query: 410 GMCILQDFEALTP 448
           G+C+LQDFEALTP
Sbjct: 116 GVCVLQDFEALTP 128

>BUN2_DROME (Q24523) Protein bunched, class 2 isoform (Protein shortsighted)|
          Length = 1206

 Score = 33.1 bits (74), Expect = 0.32
 Identities = 16/43 (37%), Positives = 23/43 (53%)
 Frame = +2

Query: 161  PDRQPQLHAGQVPRQVAPLRALVLPQQARDQQPQEEARQADQE 289
            P   P L     P  +A  + L++PQQ + QQ QEE +Q  Q+
Sbjct: 902  PQAIPTLQLQSAPSTIADPQQLMVPQQQQQQQHQEEQQQQPQQ 944

>CN102_MOUSE (Q80XC6) Protein C14orf102 homolog|
          Length = 1172

 Score = 31.6 bits (70), Expect = 0.93
 Identities = 26/86 (30%), Positives = 37/86 (43%)
 Frame = +3

Query: 150 KSRDQIVNLNYMLAKSRVKSRPSVLWCYRNKLEISSHRKKRAKQIKKLMQRGLMDPEKAD 329
           KS+  +  L Y +AK        V+WC   K       K + K  KKL +  L +PE  +
Sbjct: 738 KSQLSLSWLRYEIAK--------VIWCLHTK---KKRLKSQGKSCKKLAKNLLKEPENRN 786

Query: 330 PFSLFLETSDITYCMYKDSERVLGNT 407
            F L+ +        Y   E +LGNT
Sbjct: 787 NFCLWKQ--------YAHLEWLLGNT 804

>GPA12_CAEEL (Q19572) Guanine nucleotide-binding protein alpha-12 subunit|
          Length = 355

 Score = 31.2 bits (69), Expect = 1.2
 Identities = 26/98 (26%), Positives = 48/98 (48%), Gaps = 2/98 (2%)
 Frame = +3

Query: 99  ENGVRQRQRSMFII--VGDKSRDQIVNLNYMLAKSRVKSRPSVLWCYRNKLEISSHRKKR 272
           E+G     + M II   G+ + D++      + ++ + S   VL   RNKL I+    KR
Sbjct: 39  ESGKSTFVKQMHIIHGAGEFTADEVRAYRQQIYQNAI-SAMRVLLDARNKLGIAWEDPKR 97

Query: 273 AKQIKKLMQRGLMDPEKADPFSLFLETSDITYCMYKDS 386
             +++K+M+  + D  K   F+ F+E + I    + D+
Sbjct: 98  QVEVEKVMRFSVGDLLKGIDFTTFVEVAPIISDFWNDA 135

>DPOG1_MOUSE (P54099) DNA polymerase gamma subunit 1 (EC 2.7.7.7) (Mitochondrial|
           DNA polymerase catalytic subunit) (PolG-alpha)
          Length = 1239

 Score = 31.2 bits (69), Expect = 1.2
 Identities = 24/94 (25%), Positives = 42/94 (44%)
 Frame = +3

Query: 78  ERIRTLIENGVRQRQRSMFIIVGDKSRDQIVNLNYMLAKSRVKSRPSVLWCYRNKLEISS 257
           ER  T  +N   + QR M   + D + D       +L+  R K  P   W +  + ++  
Sbjct: 425 ERYLTEAQNTYEELQREMKKSLMDLANDAC----QLLSGERYKEDP---WLWDLEWDLQE 477

Query: 258 HRKKRAKQIKKLMQRGLMDPEKADPFSLFLETSD 359
            ++K+AK++KK      +  E A PF   ++  D
Sbjct: 478 FKQKKAKKVKKPASASKLPIEGAGPFGDPMDQED 511

>CN102_HUMAN (Q9H7Z3) Protein C14orf102|
          Length = 1164

 Score = 30.8 bits (68), Expect = 1.6
 Identities = 24/78 (30%), Positives = 34/78 (43%)
 Frame = +3

Query: 174 LNYMLAKSRVKSRPSVLWCYRNKLEISSHRKKRAKQIKKLMQRGLMDPEKADPFSLFLET 353
           L Y +AK        V+WC   K +     K + K  KKL +  L +PE  + F L+ + 
Sbjct: 737 LQYEIAK--------VIWCLHTKNK--KRLKSQGKNCKKLAKNLLKEPENCNNFCLWKQ- 785

Query: 354 SDITYCMYKDSERVLGNT 407
                  Y   E +LGNT
Sbjct: 786 -------YAHLEWLLGNT 796

>GPA12_CAEBR (Q613V4) Guanine nucleotide-binding protein alpha-12 subunit|
          Length = 355

 Score = 30.4 bits (67), Expect = 2.1
 Identities = 26/98 (26%), Positives = 48/98 (48%), Gaps = 2/98 (2%)
 Frame = +3

Query: 99  ENGVRQRQRSMFII--VGDKSRDQIVNLNYMLAKSRVKSRPSVLWCYRNKLEISSHRKKR 272
           E+G     + M II   G+ + D++      + ++ + S   VL   RNKL I+    KR
Sbjct: 39  ESGKSTFVKQMHIIHGAGEFTADEVRAYRQQIYQNAI-SAMRVLLDARNKLGIAWEDPKR 97

Query: 273 AKQIKKLMQRGLMDPEKADPFSLFLETSDITYCMYKDS 386
             +++K+M+  + D  K   F+ F+E + I    + D+
Sbjct: 98  QVEVEKVMRFTVGDLLKGIDFTTFVEVAPIISDFWNDA 135

>LMBL3_MOUSE (Q8BLB7) Lethal(3)malignant brain tumor-like 3 protein|
           (L(3)mbt-like 3 protein)
          Length = 883

 Score = 29.6 bits (65), Expect = 3.5
 Identities = 15/45 (33%), Positives = 24/45 (53%)
 Frame = +2

Query: 173 PQLHAGQVPRQVAPLRALVLPQQARDQQPQEEARQADQEAHAARA 307
           P +   Q P+QV  ++    PQQA+     ++A+QA Q   A +A
Sbjct: 664 PSVQQSQPPQQVQQVQHAQPPQQAQKAPQAQQAQQAQQAQQAPQA 708

>AGO2_DROME (Q9VUQ5) Argonaute 2 protein|
          Length = 1214

 Score = 29.6 bits (65), Expect = 3.5
 Identities = 14/41 (34%), Positives = 24/41 (58%)
 Frame = +2

Query: 167 RQPQLHAGQVPRQVAPLRALVLPQQARDQQPQEEARQADQE 289
           RQ Q    Q P+Q+   + L  PQQ + QQP ++ +Q+ ++
Sbjct: 30  RQQQPQQLQQPQQLQQPQQLQQPQQQQQQQPHQQQQQSSRQ 70

>OCTB1_DROME (Q9VCZ3) Octopamine receptor beta-1 (DmOct-beta-1R) (DmOA2)|
          Length = 508

 Score = 29.6 bits (65), Expect = 3.5
 Identities = 17/44 (38%), Positives = 24/44 (54%)
 Frame = -1

Query: 370 Q*VMSEVSRKREKGSAFSGSMSPRCMSFLICLARFFLWLLISSL 239
           Q  +S + R+R+        MS    +FLIC   FFLW ++SSL
Sbjct: 336 QSTISTMRRERKAARTLGIIMS----AFLICWLPFFLWYIVSSL 375

>THD1_SOLTU (P31212) Threonine dehydratase biosynthetic (EC 4.3.1.19)|
           (Threonine deaminase) (TD) (Fragment)
          Length = 359

 Score = 29.3 bits (64), Expect = 4.6
 Identities = 16/36 (44%), Positives = 19/36 (52%), Gaps = 4/36 (11%)
 Frame = +3

Query: 315 PEKADPFSLFLETS----DITYCMYKDSERVLGNTL 410
           PEKA   S FLE      +IT C Y+D   + GN L
Sbjct: 285 PEKAGTLSTFLEAFSPRWNITLCRYRDQGDINGNVL 320

>UVRB_FUSNN (Q8RGR2) UvrABC system protein B (Protein uvrB) (Excinuclease ABC|
           subunit B)
          Length = 663

 Score = 29.3 bits (64), Expect = 4.6
 Identities = 17/56 (30%), Positives = 33/56 (58%)
 Frame = +3

Query: 159 DQIVNLNYMLAKSRVKSRPSVLWCYRNKLEISSHRKKRAKQIKKLMQRGLMDPEKA 326
           + ++NL+Y + + + ++   V   +RNK +I     K  K+IKKL++   +D E+A
Sbjct: 596 EDLINLDYGIEEKKFENDKKV---FRNKTDIEKEITKLEKKIKKLVEE--LDFEQA 646

>NAB2_YEAST (P32505) Nuclear polyadenylated RNA-binding protein NAB2|
          Length = 525

 Score = 28.9 bits (63), Expect = 6.0
 Identities = 16/42 (38%), Positives = 21/42 (50%)
 Frame = +2

Query: 161 PDRQPQLHAGQVPRQVAPLRALVLPQQARDQQPQEEARQADQ 286
           P +QPQ    Q P+Q         PQQ   QQPQ++ +Q  Q
Sbjct: 124 PQQQPQQQPQQQPQQQ--------PQQQPQQQPQQQPQQQPQ 157

>DPOG1_RAT (Q9QYV8) DNA polymerase gamma subunit 1 (EC 2.7.7.7) (Mitochondrial|
           DNA polymerase catalytic subunit) (PolG-alpha)
          Length = 1216

 Score = 28.9 bits (63), Expect = 6.0
 Identities = 24/95 (25%), Positives = 43/95 (45%), Gaps = 1/95 (1%)
 Frame = +3

Query: 78  ERIRTLIENGVRQRQRSMFIIVGDKSRDQIVN-LNYMLAKSRVKSRPSVLWCYRNKLEIS 254
           ER  T  ++   + QR M      KS  ++ N    +L+  R K  P   W +  + ++ 
Sbjct: 424 ERYLTEAQSTYEELQREM-----KKSLMELANDACQLLSGERYKEDP---WLWDLEWDLQ 475

Query: 255 SHRKKRAKQIKKLMQRGLMDPEKADPFSLFLETSD 359
             ++K+AK++KK      +  E A PF   ++  D
Sbjct: 476 EFKQKKAKKVKKTASASKLPIEGAGPFGDPMDQED 510

>HRS_DROME (Q960X8) Hepatocyte growth factor-regulated tyrosine kinase|
           substrate
          Length = 760

 Score = 28.5 bits (62), Expect = 7.9
 Identities = 17/42 (40%), Positives = 22/42 (52%)
 Frame = +2

Query: 161 PDRQPQLHAGQVPRQVAPLRALVLPQQARDQQPQEEARQADQ 286
           P +QPQ   GQ P+Q+   +    PQQ   QQPQ+   Q  Q
Sbjct: 658 PGQQPQQIPGQQPQQIPGQQ----PQQIPGQQPQQIPVQQPQ 695

>TBX18_CAEEL (O02073) Putative T-box protein 18|
          Length = 376

 Score = 28.5 bits (62), Expect = 7.9
 Identities = 18/54 (33%), Positives = 28/54 (51%)
 Frame = +3

Query: 279 QIKKLMQRGLMDPEKADPFSLFLETSDITYCMYKDSERVLGNTLACAYCRTSRR 440
           +I +L   G+   E A   + F ETS +T  +Y++ +     TL   YCRT R+
Sbjct: 313 KIYELSNSGMEKKEIAQ--ATFPETSFVTVSIYRNQKIKEMKTLGNKYCRTDRK 364


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 40,214,227
Number of Sequences: 219361
Number of extensions: 561985
Number of successful extensions: 2268
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 2154
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2254
length of database: 80,573,946
effective HSP length: 102
effective length of database: 58,199,124
effective search space used: 2677159704
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)