ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl08d03 |
|---|---|
| Clone Library Name | barley_pub |
>HDGF_RAT (Q8VHK7) Hepatoma-derived growth factor (HDGF)| Length = 237 Score = 48.5 bits (114), Expect = 8e-06 Identities = 21/42 (50%), Positives = 28/42 (66%) Frame = +3 Query: 330 QWKAGDLVLAKMKGFPAWPAMISEPEQWGLPSVKNKRLVYFY 455 ++K GDLV AKMKG+P WPA I E + + S NK V+F+ Sbjct: 9 EYKCGDLVFAKMKGYPHWPARIDEMPEAAVKSTANKYQVFFF 50
>HDGF_MOUSE (P51859) Hepatoma-derived growth factor (HDGF)| Length = 237 Score = 48.5 bits (114), Expect = 8e-06 Identities = 21/42 (50%), Positives = 28/42 (66%) Frame = +3 Query: 330 QWKAGDLVLAKMKGFPAWPAMISEPEQWGLPSVKNKRLVYFY 455 ++K GDLV AKMKG+P WPA I E + + S NK V+F+ Sbjct: 9 EYKCGDLVFAKMKGYPHWPARIDEMPEAAVKSTANKYQVFFF 50
>HDGF_BOVIN (Q9XSK7) Hepatoma-derived growth factor (HDGF)| Length = 239 Score = 48.5 bits (114), Expect = 8e-06 Identities = 21/42 (50%), Positives = 28/42 (66%) Frame = +3 Query: 330 QWKAGDLVLAKMKGFPAWPAMISEPEQWGLPSVKNKRLVYFY 455 ++K GDLV AKMKG+P WPA I E + + S NK V+F+ Sbjct: 9 EYKCGDLVFAKMKGYPHWPARIDEMPEAAVKSTANKYQVFFF 50
>HDGF_HUMAN (P51858) Hepatoma-derived growth factor (HDGF) (High-mobility group| protein 1-like 2) (HMG-1L2) Length = 240 Score = 48.5 bits (114), Expect = 8e-06 Identities = 21/42 (50%), Positives = 28/42 (66%) Frame = +3 Query: 330 QWKAGDLVLAKMKGFPAWPAMISEPEQWGLPSVKNKRLVYFY 455 ++K GDLV AKMKG+P WPA I E + + S NK V+F+ Sbjct: 9 EYKCGDLVFAKMKGYPHWPARIDEMPEAAVKSTANKYQVFFF 50
>HDGR3_HUMAN (Q9Y3E1) Hepatoma-derived growth factor-related protein 3 (HRP-3)| (Hepatoma-derived growth factor 2) Length = 203 Score = 46.6 bits (109), Expect = 3e-05 Identities = 20/42 (47%), Positives = 28/42 (66%) Frame = +3 Query: 330 QWKAGDLVLAKMKGFPAWPAMISEPEQWGLPSVKNKRLVYFY 455 ++KAGDLV AKMKG+P WPA I E + + NK ++F+ Sbjct: 8 EYKAGDLVFAKMKGYPHWPARIDELPEGAVKPPANKYPIFFF 49
>HDGR3_RAT (Q923W4) Hepatoma-derived growth factor-related protein 3 (HRP-3)| Length = 202 Score = 46.6 bits (109), Expect = 3e-05 Identities = 20/42 (47%), Positives = 28/42 (66%) Frame = +3 Query: 330 QWKAGDLVLAKMKGFPAWPAMISEPEQWGLPSVKNKRLVYFY 455 ++KAGDLV AKMKG+P WPA I E + + NK ++F+ Sbjct: 8 EYKAGDLVFAKMKGYPHWPARIDELPEGAVKPPANKYPIFFF 49
>HDGR3_MOUSE (Q9JMG7) Hepatoma-derived growth factor-related protein 3 (HRP-3)| Length = 202 Score = 46.6 bits (109), Expect = 3e-05 Identities = 20/42 (47%), Positives = 28/42 (66%) Frame = +3 Query: 330 QWKAGDLVLAKMKGFPAWPAMISEPEQWGLPSVKNKRLVYFY 455 ++KAGDLV AKMKG+P WPA I E + + NK ++F+ Sbjct: 8 EYKAGDLVFAKMKGYPHWPARIDELPEGAVKPPANKYPIFFF 49
>PSIP1_CHICK (Q5XXA9) Lens epithelium-derived growth factor| Length = 579 Score = 42.7 bits (99), Expect = 4e-04 Identities = 17/41 (41%), Positives = 25/41 (60%) Frame = +3 Query: 333 WKAGDLVLAKMKGFPAWPAMISEPEQWGLPSVKNKRLVYFY 455 +K GDL+ AKMKG+P WPA + E + NK ++F+ Sbjct: 5 FKPGDLIFAKMKGYPHWPARVDEVPDGAVKPPTNKMPIFFF 45
>PSIP1_HUMAN (O75475) PC4 and SFRS1-interacting protein (Lens epithelium-derived| growth factor) (Transcriptional coactivator p75/p52) (Dense fine speckles 70 kDa protein) (DFS 70) (CLL-associated antigen KW-7) Length = 530 Score = 42.4 bits (98), Expect = 6e-04 Identities = 17/41 (41%), Positives = 25/41 (60%) Frame = +3 Query: 333 WKAGDLVLAKMKGFPAWPAMISEPEQWGLPSVKNKRLVYFY 455 +K GDL+ AKMKG+P WPA + E + NK ++F+ Sbjct: 5 FKPGDLIFAKMKGYPHWPARVDEVPDGAVKPPTNKLPIFFF 45
>PSIP1_FELCA (Q66T72) PC4 and SFRS1-interacting protein (Lens epithelium-derived| growth factor) (Transcription coactivator p75) (LEDGF/p75) Length = 530 Score = 42.4 bits (98), Expect = 6e-04 Identities = 17/41 (41%), Positives = 25/41 (60%) Frame = +3 Query: 333 WKAGDLVLAKMKGFPAWPAMISEPEQWGLPSVKNKRLVYFY 455 +K GDL+ AKMKG+P WPA + E + NK ++F+ Sbjct: 5 FKPGDLIFAKMKGYPHWPARVDEVPDGAVKPPTNKLPIFFF 45
>PSIP1_RAT (Q812D1) PC4 and SFRS1-interacting protein (Lens epithelium-derived| growth factor) Length = 528 Score = 42.4 bits (98), Expect = 6e-04 Identities = 17/41 (41%), Positives = 25/41 (60%) Frame = +3 Query: 333 WKAGDLVLAKMKGFPAWPAMISEPEQWGLPSVKNKRLVYFY 455 +K GDL+ AKMKG+P WPA + E + NK ++F+ Sbjct: 5 FKPGDLIFAKMKGYPHWPARVDEVPDGAVKPPTNKLPIFFF 45
>PSIP1_MOUSE (Q99JF8) PC4 and SFRS1-interacting protein (Lens epithelium-derived| growth factor) Length = 528 Score = 42.4 bits (98), Expect = 6e-04 Identities = 17/41 (41%), Positives = 25/41 (60%) Frame = +3 Query: 333 WKAGDLVLAKMKGFPAWPAMISEPEQWGLPSVKNKRLVYFY 455 +K GDL+ AKMKG+P WPA + E + NK ++F+ Sbjct: 5 FKPGDLIFAKMKGYPHWPARVDEVPDGAVKPPTNKLPIFFF 45
>YMT4_YEAST (Q04213) Hypothetical 55.4 kDa protein in MCM1-NUP116 intergenic| region Length = 475 Score = 34.3 bits (77), Expect = 0.15 Identities = 14/17 (82%), Positives = 16/17 (94%) Frame = +3 Query: 345 DLVLAKMKGFPAWPAMI 395 D+VLAK+KGF AWPAMI Sbjct: 10 DIVLAKVKGFSAWPAMI 26
>YAE1_SCHPO (Q09842) Hypothetical PWWP domain protein C23D3.01| Length = 407 Score = 33.1 bits (74), Expect = 0.34 Identities = 16/37 (43%), Positives = 23/37 (62%) Frame = +3 Query: 333 WKAGDLVLAKMKGFPAWPAMISEPEQWGLPSVKNKRL 443 +K G+ VLAKM FP WPA ++ Q +P+ +RL Sbjct: 61 YKNGEYVLAKMSSFPWWPARVA--SQKSIPTEVRERL 95
>ATX3_ARATH (Q9M364) Histone-lysine N-methyltransferase ATX3 (EC 2.1.1.43)| (Trithorax-homolog protein 3) (TRX-homolog protein 3) (Protein SET DOMAIN GROUP 14) Length = 902 Score = 31.2 bits (69), Expect = 1.3 Identities = 14/26 (53%), Positives = 19/26 (73%), Gaps = 1/26 (3%) Frame = +3 Query: 330 QWKAGDLVLAKM-KGFPAWPAMISEP 404 ++ GDLV AK K FPAWPA++ +P Sbjct: 186 EFTVGDLVWAKCGKRFPAWPAVVIDP 211
>MSH6_MOUSE (P54276) DNA mismatch repair protein MSH6 (MutS-alpha 160 kDa| subunit) (G/T mismatch-binding protein) (GTBP) (GTMBP) (p160) Length = 1358 Score = 31.2 bits (69), Expect = 1.3 Identities = 11/18 (61%), Positives = 15/18 (83%) Frame = +3 Query: 342 GDLVLAKMKGFPAWPAMI 395 GDLV AKM+G+P WP ++ Sbjct: 93 GDLVWAKMEGYPWWPCLV 110
>MSH6_HUMAN (P52701) DNA mismatch repair protein MSH6 (MutS-alpha 160 kDa| subunit) (G/T mismatch binding protein) (GTBP) (GTMBP) (p160) Length = 1360 Score = 31.2 bits (69), Expect = 1.3 Identities = 11/18 (61%), Positives = 15/18 (83%) Frame = +3 Query: 342 GDLVLAKMKGFPAWPAMI 395 GDLV AKM+G+P WP ++ Sbjct: 93 GDLVWAKMEGYPWWPCLV 110
>YH57_SCHPO (O94312) PWWP domain protein C215.07c| Length = 568 Score = 30.8 bits (68), Expect = 1.7 Identities = 12/21 (57%), Positives = 15/21 (71%) Frame = +3 Query: 333 WKAGDLVLAKMKGFPAWPAMI 395 +K G VL KM GFP WP+M+ Sbjct: 123 YKPGMRVLTKMSGFPWWPSMV 143
>DNM3B_MOUSE (O88509) DNA (cytosine-5)-methyltransferase 3B (EC 2.1.1.37)| (Dnmt3b) (DNA methyltransferase MmuIIIB) (DNA MTase MmuIIIB) (M.MmuIIIB) Length = 859 Score = 30.4 bits (67), Expect = 2.2 Identities = 12/18 (66%), Positives = 14/18 (77%) Frame = +3 Query: 342 GDLVLAKMKGFPAWPAMI 395 GDLV K+KGF WPAM+ Sbjct: 233 GDLVWGKIKGFSWWPAMV 250
>BRPF1_HUMAN (P55201) Peregrin (Bromodomain and PHD finger-containing protein 1)| (BR140 protein) Length = 1214 Score = 30.4 bits (67), Expect = 2.2 Identities = 15/44 (34%), Positives = 23/44 (52%) Frame = +3 Query: 276 VRRKRGXXXXXXXXXXXXQWKAGDLVLAKMKGFPAWPAMISEPE 407 VR+ G A DLV AK +G+P++PA+I +P+ Sbjct: 1064 VRKSLGRGAGWLSEDEDSPLDALDLVWAKCRGYPSYPALIIDPK 1107
>DNM3B_HUMAN (Q9UBC3) DNA (cytosine-5)-methyltransferase 3B (EC 2.1.1.37)| (Dnmt3b) (DNA methyltransferase HsaIIIB) (DNA MTase HsaIIIB) (M.HsaIIIB) Length = 853 Score = 30.4 bits (67), Expect = 2.2 Identities = 12/18 (66%), Positives = 14/18 (77%) Frame = +3 Query: 342 GDLVLAKMKGFPAWPAMI 395 GDLV K+KGF WPAM+ Sbjct: 226 GDLVWGKIKGFSWWPAMV 243
>ZMY11_MOUSE (Q8R5C8) Zinc finger MYND domain-containing protein 11| Length = 562 Score = 29.3 bits (64), Expect = 4.9 Identities = 12/21 (57%), Positives = 15/21 (71%) Frame = +3 Query: 345 DLVLAKMKGFPAWPAMISEPE 407 +LV AKMKGF WPA + + E Sbjct: 242 ELVWAKMKGFGFWPAKVMQKE 262
>ZMY11_HUMAN (Q15326) Zinc finger MYND domain-containing protein 11 (Adenovirus| 5 E1A-binding protein) (BS69 protein) Length = 562 Score = 29.3 bits (64), Expect = 4.9 Identities = 12/21 (57%), Positives = 15/21 (71%) Frame = +3 Query: 345 DLVLAKMKGFPAWPAMISEPE 407 +LV AKMKGF WPA + + E Sbjct: 242 ELVWAKMKGFGFWPAKVMQKE 262
>SRRM1_MOUSE (Q52KI8) Serine/arginine repetitive matrix protein 1| (Plenty-of-prolines 101) Length = 946 Score = 28.9 bits (63), Expect = 6.4 Identities = 14/32 (43%), Positives = 18/32 (56%) Frame = -3 Query: 265 SLPATS*PQRRHRPTSDQNSRTASGAVVSTRG 170 S PAT P+ RH PT Q++RT V + G Sbjct: 400 SSPATPPPKTRHSPTPQQSNRTRKSRVSVSPG 431
>BRPF3_HUMAN (Q9ULD4) Bromodomain and PHD finger-containing protein 3| Length = 1205 Score = 28.5 bits (62), Expect = 8.4 Identities = 10/21 (47%), Positives = 18/21 (85%) Frame = +3 Query: 345 DLVLAKMKGFPAWPAMISEPE 407 +LV AK +G+P++PA+I +P+ Sbjct: 1078 ELVWAKCRGYPSYPALIIDPK 1098
>SRRM1_PONPY (Q5R5Q2) Serine/arginine repetitive matrix protein 1| Length = 917 Score = 28.5 bits (62), Expect = 8.4 Identities = 14/32 (43%), Positives = 18/32 (56%) Frame = -3 Query: 265 SLPATS*PQRRHRPTSDQNSRTASGAVVSTRG 170 S PAT P+ RH PT Q++RT V + G Sbjct: 402 SPPATPPPKTRHSPTPQQSNRTRKSRVSVSPG 433
>SRRM1_HUMAN (Q8IYB3) Serine/arginine repetitive matrix protein 1| (Ser/Arg-related nuclear matrix protein) (SR-related nuclear matrix protein of 160 kDa) (SRm160) Length = 904 Score = 28.5 bits (62), Expect = 8.4 Identities = 14/32 (43%), Positives = 18/32 (56%) Frame = -3 Query: 265 SLPATS*PQRRHRPTSDQNSRTASGAVVSTRG 170 S PAT P+ RH PT Q++RT V + G Sbjct: 402 SPPATPPPKTRHSPTPQQSNRTRKSRVSVSPG 433 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 49,400,191 Number of Sequences: 219361 Number of extensions: 719776 Number of successful extensions: 1769 Number of sequences better than 10.0: 27 Number of HSP's better than 10.0 without gapping: 1720 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1768 length of database: 80,573,946 effective HSP length: 102 effective length of database: 58,199,124 effective search space used: 2851757076 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
