>SF3B3_HUMAN (Q15393) Splicing factor 3B subunit 3 (Spliceosome-associated|
           protein 130) (SAP 130) (SF3b130) (Pre-mRNA splicing
           factor SF3b 130 kDa subunit) (STAF130)
          Length = 1217

 Score =  179 bits (455), Expect = 3e-45
 Identities = 89/136 (65%), Positives = 107/136 (78%)
 Frame = +2

Query: 62  MYLYSLTLQRATGAVCAVIGSFSGRDSKKSNAAGSSTQEIAVARGGTLDLLRPDPETGRL 241
           M+LY+LTLQRATG   A+ G+FSG          +  QEI V+RG  L+LLRPDP TG++
Sbjct: 1   MFLYNLTLQRATGISFAIHGNFSG----------TKQQEIVVSRGKILELLRPDPNTGKV 50

Query: 242 RTLLSVDVFGAIRSLAQFRLTGATKDYLVVGSDSGRLVILEYSPDRNRFDKVHQETFGKS 421
            TLL+V+VFG IRSL  FRLTG TKDY+VVGSDSGR+VILEY P +N F+K+HQETFGKS
Sbjct: 51  HTLLTVEVFGVIRSLMAFRLTGGTKDYIVVGSDSGRIVILEYQPSKNMFEKIHQETFGKS 110

Query: 422 GCRRIVPGQLLSVDPR 469
           GCRRIVPGQ L+VDP+
Sbjct: 111 GCRRIVPGQFLAVDPK 126

>RSE1_USTMA (Q4PGM6) Pre-mRNA-splicing factor RSE1|
          Length = 1221

 Score =  157 bits (398), Expect = 1e-38
 Identities = 80/136 (58%), Positives = 98/136 (72%)
 Frame = +2

Query: 62  MYLYSLTLQRATGAVCAVIGSFSGRDSKKSNAAGSSTQEIAVARGGTLDLLRPDPETGRL 241
           MYLY+LTLQ +      V+G FSG          +  QEI VA+G  L+LLRPD +TG++
Sbjct: 4   MYLYNLTLQASGSVNATVVGQFSG----------TRQQEIIVAKGSRLELLRPDTQTGKV 53

Query: 242 RTLLSVDVFGAIRSLAQFRLTGATKDYLVVGSDSGRLVILEYSPDRNRFDKVHQETFGKS 421
            T+LS D FG IRSLA FRLTG +KDY++VGSDSGR+VILEY P  N  +KVHQETFG+S
Sbjct: 54  DTVLSHDAFGVIRSLAAFRLTGGSKDYVIVGSDSGRIVILEYQPKTNSLEKVHQETFGRS 113

Query: 422 GCRRIVPGQLLSVDPR 469
           G RRIVPGQ L+ DP+
Sbjct: 114 GSRRIVPGQYLATDPK 129

>RSE1_ASPFU (Q4WLI5) Pre-mRNA-splicing factor rse1|
          Length = 1225

 Score =  145 bits (367), Expect = 4e-35
 Identities = 69/136 (50%), Positives = 95/136 (69%)
 Frame = +2

Query: 62  MYLYSLTLQRATGAVCAVIGSFSGRDSKKSNAAGSSTQEIAVARGGTLDLLRPDPETGRL 241
           M++YSLT+Q  T    A++G F          AG+  Q+I  A G  L + RPDP  G++
Sbjct: 7   MFMYSLTIQPPTAITQAILGQF----------AGTKEQQIVTASGSKLTIHRPDPTQGKI 56

Query: 242 RTLLSVDVFGAIRSLAQFRLTGATKDYLVVGSDSGRLVILEYSPDRNRFDKVHQETFGKS 421
             + S DVFG IR+LA FRL G++KDY+++GSDSGR+ I+EY P +NRF+++H ETFGKS
Sbjct: 57  TPIYSQDVFGIIRTLAAFRLAGSSKDYIIIGSDSGRITIIEYVPSQNRFNRIHLETFGKS 116

Query: 422 GCRRIVPGQLLSVDPR 469
           G RR+VPGQ L+VDP+
Sbjct: 117 GVRRVVPGQYLAVDPK 132

>RSE1_EMENI (Q5B1X8) Pre-mRNA-splicing factor rse1|
          Length = 1226

 Score =  144 bits (362), Expect = 2e-34
 Identities = 69/136 (50%), Positives = 94/136 (69%)
 Frame = +2

Query: 62  MYLYSLTLQRATGAVCAVIGSFSGRDSKKSNAAGSSTQEIAVARGGTLDLLRPDPETGRL 241
           M++YSLT+Q  T    A++G F          AG+  Q+I  A G  L + RPDP  G++
Sbjct: 7   MFMYSLTIQPPTAITQAILGQF----------AGTKEQQIVTASGSKLTIHRPDPTQGKV 56

Query: 242 RTLLSVDVFGAIRSLAQFRLTGATKDYLVVGSDSGRLVILEYSPDRNRFDKVHQETFGKS 421
             L + DVFG IR+LA FRL G+ KDY+++GSDSGR+ I+EY P +NRF+++H ETFGKS
Sbjct: 57  IPLYTQDVFGIIRTLAAFRLAGSNKDYIIIGSDSGRITIIEYVPSQNRFNRIHLETFGKS 116

Query: 422 GCRRIVPGQLLSVDPR 469
           G RR+VPGQ L+VDP+
Sbjct: 117 GVRRVVPGQYLAVDPK 132

>RSE1_NEUCR (Q7RYR4) Pre-mRNA-splicing factor rse-1|
          Length = 1271

 Score =  141 bits (356), Expect = 8e-34
 Identities = 66/136 (48%), Positives = 93/136 (68%)
 Frame = +2

Query: 62  MYLYSLTLQRATGAVCAVIGSFSGRDSKKSNAAGSSTQEIAVARGGTLDLLRPDPETGRL 241
           M+LYSLT+Q  T    A++G FSG          +  Q+I  A G  L LL+PDP  G++
Sbjct: 7   MFLYSLTIQPPTAVTQALLGQFSG----------TKEQQILTASGSRLTLLQPDPRQGKV 56

Query: 242 RTLLSVDVFGAIRSLAQFRLTGATKDYLVVGSDSGRLVILEYSPDRNRFDKVHQETFGKS 421
            TLLS D+FG +R++A FRL G+ KDY+++ +DSGR+ I+EY P  N+F ++H ETFGKS
Sbjct: 57  NTLLSHDIFGIVRAIASFRLAGSHKDYIILATDSGRITIIEYLPKTNKFQRIHLETFGKS 116

Query: 422 GCRRIVPGQLLSVDPR 469
           G RR++PGQ L+ DP+
Sbjct: 117 GVRRVIPGQYLAADPK 132

>RSE1_MAGGR (Q52E49) Pre-mRNA-splicing factor RSE1|
          Length = 1229

 Score =  140 bits (352), Expect = 2e-33
 Identities = 69/136 (50%), Positives = 92/136 (67%)
 Frame = +2

Query: 62  MYLYSLTLQRATGAVCAVIGSFSGRDSKKSNAAGSSTQEIAVARGGTLDLLRPDPETGRL 241
           M+LYSL++Q  +    A++G FSG          +  Q+I  A G  L L RPDP  G++
Sbjct: 7   MFLYSLSIQPPSTITRAILGQFSG----------TKEQQIVAASGSRLTLYRPDPTQGKV 56

Query: 242 RTLLSVDVFGAIRSLAQFRLTGATKDYLVVGSDSGRLVILEYSPDRNRFDKVHQETFGKS 421
             L+S DVFG IR LA FRL G++KDYL++ SDSGR+ I+EY P +NRF ++H ETFGKS
Sbjct: 57  VPLMSHDVFGIIRDLASFRLAGSSKDYLIIASDSGRITIVEYLPAQNRFSRIHLETFGKS 116

Query: 422 GCRRIVPGQLLSVDPR 469
           G RR+VPGQ L+ DP+
Sbjct: 117 GVRRVVPGQYLAADPK 132

>RSE1_CRYNE (Q5KP25) Pre-mRNA-splicing factor RSE1|
          Length = 1217

 Score =  123 bits (308), Expect = 3e-28
 Identities = 73/143 (51%), Positives = 96/143 (67%), Gaps = 3/143 (2%)
 Frame = +2

Query: 62  MYLYSLTLQRATGAVCAVIGSFSGRDSKKSNAAGSSTQEIAVARGGT-LDLLRPDPETGR 238
           M+L +LTL   T    AV+GSFSG          S +QEI   RGGT L++ + +  TG+
Sbjct: 1   MHLLNLTLSSPTNVSTAVVGSFSG----------SKSQEILCVRGGTKLEIFKLNATTGQ 50

Query: 239 LRTLLSVDVFGAIRSLAQFRLTGATKDYLVVGSDSGRLVILEY--SPDRNRFDKVHQETF 412
           L T++S + FG IR++A FRL G TKDY++  SDSGRL ILE+  SP  + F+ ++QE F
Sbjct: 51  LDTIVSTEAFGTIRNIAGFRLAGMTKDYILATSDSGRLSILEFVISPTPH-FESLYQEVF 109

Query: 413 GKSGCRRIVPGQLLSVDPRAGRS 481
           GKSG RRIVPGQ L+VDP+ GRS
Sbjct: 110 GKSGSRRIVPGQFLAVDPK-GRS 131

>RSE1_SCHPO (Q9UTT2) Pre-mRNA-splicing factor rse1 (Pre-mRNA processing protein|
           12) (Spliceosome associated protein 130)
          Length = 1206

 Score =  112 bits (281), Expect = 4e-25
 Identities = 60/142 (42%), Positives = 91/142 (64%)
 Frame = +2

Query: 59  AMYLYSLTLQRATGAVCAVIGSFSGRDSKKSNAAGSSTQEIAVARGGTLDLLRPDPETGR 238
           +++LYSLT+Q +     +   S SG+ +          QEI +A    L + + D   GR
Sbjct: 6   SLFLYSLTIQNSNYVQSSCAASLSGKKA----------QEIVIATESRLLIYKVDATDGR 55

Query: 239 LRTLLSVDVFGAIRSLAQFRLTGATKDYLVVGSDSGRLVILEYSPDRNRFDKVHQETFGK 418
           +  +L+ + FG IR++A  RLTG  +DYLVV SDSGR+ ILEY+ ++N+   ++QETFGK
Sbjct: 56  MNCILNQNCFGIIRNVAPLRLTGFKRDYLVVTSDSGRITILEYNVEKNKLVPIYQETFGK 115

Query: 419 SGCRRIVPGQLLSVDPRAGRSA 484
           SG RR+VPG+ L++D + GR+A
Sbjct: 116 SGIRRVVPGEYLAIDAK-GRAA 136

>RSE1_DEBHA (Q6BYK1) Pre-mRNA-splicing factor RSE1|
          Length = 1256

 Score = 97.4 bits (241), Expect = 2e-20
 Identities = 51/136 (37%), Positives = 83/136 (61%)
 Frame = +2

Query: 59  AMYLYSLTLQRATGAVCAVIGSFSGRDSKKSNAAGSSTQEIAVARGGTLDLLRPDPETGR 238
           ++YLY+LT++  +  + +++G F G  +KKS       QEI +A   +++L + D  TG+
Sbjct: 7   SLYLYNLTIKHPSLCIASIVGQFLG--NKKS-------QEIILANSTSIELWKADSNTGK 57

Query: 239 LRTLLSVDVFGAIRSLAQFRLTGATKDYLVVGSDSGRLVILEYSPDRNRFDKVHQETFGK 418
           L  +     FG I+ + + RL G  KDY+V+ SDSG+LV+LE+  ++ +F  + QE   K
Sbjct: 58  LEKIYQQASFGIIQGIDKIRLVGTQKDYVVITSDSGKLVVLEFDIEKLQFVPLFQEPHSK 117

Query: 419 SGCRRIVPGQLLSVDP 466
           +G RR  PG+ L VDP
Sbjct: 118 NGLRRTSPGEYLCVDP 133

>RSE1_YARLI (Q6CAH5) Pre-mRNA-splicing factor RSE1|
          Length = 1143

 Score = 80.1 bits (196), Expect = 3e-15
 Identities = 47/134 (35%), Positives = 73/134 (54%)
 Frame = +2

Query: 68  LYSLTLQRATGAVCAVIGSFSGRDSKKSNAAGSSTQEIAVARGGTLDLLRPDPETGRLRT 247
           LY  TL R++    A+ G FSG+  +    + +         G  L L   D +TG +  
Sbjct: 24  LYHSTL-RSSSPKSAICGRFSGKSQQVITLSST---------GNALYLYSHDGDTGTVTL 73

Query: 248 LLSVDVFGAIRSLAQFRLTGATKDYLVVGSDSGRLVILEYSPDRNRFDKVHQETFGKSGC 427
           + +      +R +  FRL G  KDY++  SDSG + +LE+    NRF  +H+E +G+SG 
Sbjct: 74  IHTHLTHCQVREIRAFRLPGLKKDYVIASSDSGVISVLEFR--HNRFVSLHKEAYGRSGI 131

Query: 428 RRIVPGQLLSVDPR 469
           RR+VPG+ L+VDP+
Sbjct: 132 RRVVPGEFLAVDPK 145

>RSE1_CANAL (Q5A7S5) Pre-mRNA-splicing factor RSE1|
          Length = 1219

 Score = 68.2 bits (165), Expect = 1e-11
 Identities = 43/136 (31%), Positives = 72/136 (52%)
 Frame = +2

Query: 59  AMYLYSLTLQRATGAVCAVIGSFSGRDSKKSNAAGSSTQEIAVARGGTLDLLRPDPETGR 238
           ++YLY+LTL+  +  + +++G F  +D+   NA     Q++ +    TL L   + E G+
Sbjct: 39  SVYLYNLTLKPPSYYISSIVGQFYKQDNSTKNA-----QQLVLVSSTTLQLFEINEEAGK 93

Query: 239 LRTLLSVDVFGAIRSLAQFRLTGATKDYLVVGSDSGRLVILEYSPDRNRFDKVHQETFGK 418
           L    S ++ G I S+ +  L+    D +V+ SDSG L IL+Y     +F    QE   K
Sbjct: 94  LELQSSQNLLGIINSIEKICLSEV--DGVVITSDSGNLSILQYDNKTKKFISKIQEPMTK 151

Query: 419 SGCRRIVPGQLLSVDP 466
           +G  R   G+ L++DP
Sbjct: 152 NGWGRNYVGENLAIDP 167

>RSE1_ASHGO (Q753D4) Pre-mRNA-splicing factor RSE1|
          Length = 1288

 Score = 58.2 bits (139), Expect = 1e-08
 Identities = 46/150 (30%), Positives = 71/150 (47%), Gaps = 14/150 (9%)
 Frame = +2

Query: 62  MYLYSLTLQRATGAVCAVIGSFSGRDSKKSNAAGSSTQ------------EIAVARGGTL 205
           ++LY ++LQ+    V + IG F         A G S +            +I +A    +
Sbjct: 7   LHLYHVSLQKQRNYVHSCIGHFVDYRHHHIRAQGGSVEGGKKGSKWRKQLQICMATQTQV 66

Query: 206 DLLRPDPETGRLRTLLSVDVFGAIRSLAQFRLTGATKDYLVVGSDSGRLVIL--EYSPDR 379
           +L   D E GRLR L +  VFG I  L+     G  +  L+V  DSG++ +L  +Y   R
Sbjct: 67  ELY--DVEEGRLRRLFTRTVFGTITGLSSVVADG--RSVLIVVGDSGKMSVLRFKYEGGR 122

Query: 380 NRFDKVHQETFGKSGCRRIVPGQLLSVDPR 469
            R + +  E   +SG RR+ P   +SVDP+
Sbjct: 123 VRLEALFNEPLSRSGVRRLSPQAHVSVDPQ 152

>DDB1B_ARATH (O49552) DNA damage binding protein 1b (UV-damaged DNA-binding|
           protein 1b) (DDB1b)
          Length = 1088

 Score = 37.7 bits (86), Expect = 0.017
 Identities = 26/103 (25%), Positives = 51/103 (49%)
 Frame = +2

Query: 59  AMYLYSLTLQRATGAVCAVIGSFSGRDSKKSNAAGSSTQEIAVARGGTLDLLRPDPETGR 238
           +++ Y++T Q+ T    + +G+F+         A S+  EI         LL P      
Sbjct: 2   SVWNYAVTAQKPTCVTHSCVGNFTSPQELNLIVAKSTRIEI--------HLLSPQ----G 49

Query: 239 LRTLLSVDVFGAIRSLAQFRLTGATKDYLVVGSDSGRLVILEY 367
           L+T+L V ++G I ++  FR  G  +D+L V ++  +  +L++
Sbjct: 50  LQTILDVPLYGRIATMELFRPHGEAQDFLFVATERYKFCVLQW 92

>DDB1A_ARATH (Q9M0V3) DNA damage binding protein 1a (UV-damaged DNA-binding|
           protein 1a) (DDB1a)
          Length = 1088

 Score = 35.8 bits (81), Expect = 0.064
 Identities = 24/102 (23%), Positives = 46/102 (45%)
 Frame = +2

Query: 71  YSLTLQRATGAVCAVIGSFSGRDSKKSNAAGSSTQEIAVARGGTLDLLRPDPETGRLRTL 250
           Y +T  + T    + +G+F+         A  +  EI         LL P      L+ +
Sbjct: 6   YVVTAHKPTSVTHSCVGNFTSPQELNLIVAKCTRIEI--------HLLTPQG----LQPM 53

Query: 251 LSVDVFGAIRSLAQFRLTGATKDYLVVGSDSGRLVILEYSPD 376
           L V ++G I +L  FR  G  +D+L + ++  +  +L++ P+
Sbjct: 54  LDVPIYGRIATLELFRPHGEAQDFLFIATERYKFCVLQWDPE 95

>DDB1_LYCES (Q6QNU4) DNA damage binding protein 1 (UV-damaged DNA-binding|
           protein 1) (High pigmentation protein 1)
          Length = 1090

 Score = 35.4 bits (80), Expect = 0.084
 Identities = 25/106 (23%), Positives = 49/106 (46%)
 Frame = +2

Query: 59  AMYLYSLTLQRATGAVCAVIGSFSGRDSKKSNAAGSSTQEIAVARGGTLDLLRPDPETGR 238
           +++ Y +T  + T    + +G+F+G        A  +  EI         LL P      
Sbjct: 2   SVWNYVVTAHKPTNVTHSCVGNFTGPQELNLIIAKCTRIEI--------HLLTPQG---- 49

Query: 239 LRTLLSVDVFGAIRSLAQFRLTGATKDYLVVGSDSGRLVILEYSPD 376
           L+ +L V ++G I +L  FR  G T+D L + ++  +  +L++  +
Sbjct: 50  LQPMLDVPIYGRIATLELFRPHGETQDLLFIATERYKFCVLQWDTE 95

>DDB1_HUMAN (Q16531) DNA damage-binding protein 1 (Damage-specific DNA-binding|
           protein 1) (UV-damaged DNA-binding factor) (DDB p127
           subunit) (DDBa) (UV-damaged DNA-binding protein 1)
           (UV-DDB 1) (Xeroderma pigmentosum group E-complementing
           protein) (XPCe)
          Length = 1140

 Score = 35.4 bits (80), Expect = 0.084
 Identities = 31/109 (28%), Positives = 44/109 (40%)
 Frame = +2

Query: 65  YLYSLTLQRATGAVCAVIGSFSGRDSKKSNAAGSSTQEIAVARGGTLDLLRPDPETGRLR 244
           Y Y +T Q+ T     V G F+  +      A ++  EI V    T + LRP  E G   
Sbjct: 3   YNYVVTAQKPTAVNGCVTGHFTSAEDLNLLIAKNTRLEIYVV---TAEGLRPVKEVG--- 56

Query: 245 TLLSVDVFGAIRSLAQFRLTGATKDYLVVGSDSGRLVILEYSPDRNRFD 391
                 ++G I  +  FR  G +KD L + +      ILEY       D
Sbjct: 57  ------MYGKIAVMELFRPKGESKDLLFILTAKYNACILEYKQSGESID 99

>PMA2_SCHPO (P28876) Plasma membrane ATPase 2 (EC 3.6.3.6) (Proton pump 2)|
          Length = 1010

 Score = 35.0 bits (79), Expect = 0.11
 Identities = 28/120 (23%), Positives = 47/120 (39%)
 Frame = +2

Query: 128 SGRDSKKSNAAGSSTQEIAVARGGTLDLLRPDPETGRLRTLLSVDVFGAIRSLAQFRLTG 307
           SG  + +  AA ++  + A  + G   +      T R +   +     A         TG
Sbjct: 58  SGNAAPRLTAAPNTHAQQANLQSGNTSITHETQSTSRGQEATTSPSLSASHEKPARPQTG 117

Query: 308 ATKDYLVVGSDSGRLVILEYSPDRNRFDKVHQETFGKSGCRRIVPGQLLSVDPRAGRSAS 487
              D      D   L+   YS D+       +E+ G +G  ++VP +LL  DP+ G + S
Sbjct: 118 EGSDNEDEDEDIDALIEDLYSQDQEEEQVEEEESPGPAGAAKVVPEELLETDPKYGLTES 177

>RSE1_YEAST (Q04693) Pre-mRNA splicing factor RSE1 (RNA splicing and ER to|
           Golgi transport factor 1) (Spliceosome-associated
           protein 130)
          Length = 1361

 Score = 34.7 bits (78), Expect = 0.14
 Identities = 35/146 (23%), Positives = 60/146 (41%), Gaps = 11/146 (7%)
 Frame = +2

Query: 62  MYLYSLTLQRATGAVCAVIGSFSGRDSKKSNAAGSSTQEIAVARGGTLDLLRPDPETGRL 241
           +YLY LTL++ T  V + IG F   +      AGS  ++  +       L   D   G L
Sbjct: 58  LYLYHLTLKKQTNFVHSCIGHFVDLE------AGSKREQSQLCVATETHLELYDTADGEL 111

Query: 242 RTLLSV-DVFGAIRSLAQFRLTGATK--------DYLVVGSDSGRLVILEYSPDRN--RF 388
           + +    ++F  I S+    L  +           +L + SDSG L I++        R 
Sbjct: 112 KLIAKFQNLFATITSMKSLDLPHSGSRAKASNWPTFLALTSDSGNLSIVQIIMHAGALRL 171

Query: 389 DKVHQETFGKSGCRRIVPGQLLSVDP 466
             +  +   ++  RR+ P   + +DP
Sbjct: 172 KTLVNQPLTRTTLRRVSPISYMEIDP 197

>DDB1_LYCCS (Q6E7D1) DNA damage binding protein 1 (UV-damaged DNA-binding|
           protein 1)
          Length = 1095

 Score = 34.7 bits (78), Expect = 0.14
 Identities = 23/106 (21%), Positives = 48/106 (45%)
 Frame = +2

Query: 59  AMYLYSLTLQRATGAVCAVIGSFSGRDSKKSNAAGSSTQEIAVARGGTLDLLRPDPETGR 238
           +++ Y +T  + T    + +G+F+G        A  +  EI +     L  +   P    
Sbjct: 2   SVWNYVVTAHKPTNVTHSCVGNFTGPQELNLIIAKCTRIEIHLLTPQGLQCICLQP---- 57

Query: 239 LRTLLSVDVFGAIRSLAQFRLTGATKDYLVVGSDSGRLVILEYSPD 376
              +L V ++G I +L  FR  G T+D L + ++  +  +L++  +
Sbjct: 58  ---MLDVPIYGRIATLELFRPHGETQDLLFIATERYKFCVLQWDTE 100

>RSE1_KLULA (Q6CXH8) Pre-mRNA-splicing factor RSE1|
          Length = 1269

 Score = 34.3 bits (77), Expect = 0.19
 Identities = 37/153 (24%), Positives = 62/153 (40%), Gaps = 18/153 (11%)
 Frame = +2

Query: 68  LYSLTLQRATGAVCAVIGSFSGRDSKKSNAAGSSTQ-------------EIAVARGGTLD 208
           L+   LQR    V + IG F+   S  + A   +T              ++ +A    ++
Sbjct: 9   LWHTVLQRHRNYVHSCIGDFTLDRSSLATAEADTTSVKGPRSSKKRKELQLCLATQDCVE 68

Query: 209 LLRPDPETGRLRTLLSVDVFGAIRSLAQFRLTGATKDYLVVGSDSGRLVILEYSPDRNRF 388
           L   D   G L  L    +   I S+ +  +   +   LV+ +DSG L   ++  D +  
Sbjct: 69  LY--DVSNGTLDALGKWPIAATILSMTKLNMDRCSHTILVLITDSGNLTFWQFERD-SVS 125

Query: 389 DKVH-----QETFGKSGCRRIVPGQLLSVDPRA 472
            KV+      E   +SG RR VP   +  DP++
Sbjct: 126 GKVYVRTLANEPISRSGIRRFVPQYQMVSDPQS 158

>RSE1_CANGA (Q6FLQ6) Pre-mRNA-splicing factor RSE1|
          Length = 1296

 Score = 33.1 bits (74), Expect = 0.42
 Identities = 37/122 (30%), Positives = 53/122 (43%), Gaps = 2/122 (1%)
 Frame = +2

Query: 62  MYLYSLTLQRATGAVCAVIGSFSGRDSKKSNAAGSSTQEIAVARGGTLDLLRPDPETGRL 241
           M LY LTLQR +  V +V GSF GRDS +   A  +  E+    G     +  D      
Sbjct: 1   MELYHLTLQRQSNYVHSVKGSFLGRDSNELVVATQTHIELYDFAGKVRRKVGND--IVLF 58

Query: 242 RTLLSVDVFGAIRSLAQFRLTGATKDYLVVGSDSGRLVILEY--SPDRNRFDKVHQETFG 415
            +LL++D       LA          +LV+   +G LV+ ++  S DR + D      F 
Sbjct: 59  TSLLALDTIWDEDGLA----------HLVMLGQNGNLVVAKFALSGDRLQLDSEFLYRFD 108

Query: 416 KS 421
            S
Sbjct: 109 NS 110

>DDB1_CERAE (P33194) DNA damage-binding protein 1 (Damage-specific DNA-binding|
           protein 1) (DDB p127 subunit) (DDBa) (UV-damaged
           DNA-binding protein 1) (UV-DDB 1)
          Length = 1140

 Score = 33.1 bits (74), Expect = 0.42
 Identities = 30/109 (27%), Positives = 43/109 (39%)
 Frame = +2

Query: 65  YLYSLTLQRATGAVCAVIGSFSGRDSKKSNAAGSSTQEIAVARGGTLDLLRPDPETGRLR 244
           Y Y +T Q+ T     V   F+  +      A ++  EI V    T + LRP  E G   
Sbjct: 3   YNYVVTAQKPTAVNGCVTAHFTSAEDLNLLIAKNTRLEIYVV---TAEGLRPVKEVG--- 56

Query: 245 TLLSVDVFGAIRSLAQFRLTGATKDYLVVGSDSGRLVILEYSPDRNRFD 391
                 ++G I  +  FR  G +KD L + +      ILEY       D
Sbjct: 57  ------MYGKIAVMELFRPKGESKDLLFILTAKYNACILEYKQSGESID 99

>ASX_DROME (Q9V727) Polycomb protein Asx (Additional sex combs)|
          Length = 1669

 Score = 32.0 bits (71), Expect = 0.93
 Identities = 21/68 (30%), Positives = 33/68 (48%), Gaps = 2/68 (2%)
 Frame = +2

Query: 104 VCAVIGSFSGRDSKKSNAAGSSTQEIAVARGGTLDLLRPDP--ETGRLRTLLSVDVFGAI 277
           V A I  FS +  ++SN   ++  +I   + G +DL  PD    +  LR LL+   F  +
Sbjct: 177 VLASIPGFSVKPRRRSNKKLTTAAQIEQTKDGKIDLETPDSILASTNLRALLNKQTFSLL 236

Query: 278 RSLAQFRL 301
             L Q+ L
Sbjct: 237 PPLYQYNL 244

>DHTM_METME (P16099) Trimethylamine dehydrogenase (EC 1.5.8.2) (TMADh)|
          Length = 729

 Score = 30.4 bits (67), Expect = 2.7
 Identities = 21/75 (28%), Positives = 33/75 (44%), Gaps = 2/75 (2%)
 Frame = +2

Query: 233 GRLRTLLSVDVFGAIRSLAQFRLTGATKDYLVVGSDSGRLV--ILEYSPDRNRFDKVHQE 406
           G+   +L+ D +    SLA+   T   +  +V G      +   LEY     R  ++H E
Sbjct: 528 GKRVVILNADTYFMAPSLAEKLATAGHEVTIVSGVHLANYMHFTLEYPNMMRRLHELHVE 587

Query: 407 TFGKSGCRRIVPGQL 451
             G   C RI PG++
Sbjct: 588 ELGDHFCSRIEPGRM 602

>RPTOR_HUMAN (Q8N122) Regulatory associated protein of mTOR (Raptor) (P150|
           target of rapamycin (TOR)-scaffold protein)
          Length = 1335

 Score = 29.6 bits (65), Expect = 4.6
 Identities = 21/58 (36%), Positives = 29/58 (50%)
 Frame = +2

Query: 182 AVARGGTLDLLRPDPETGRLRTLLSVDVFGAIRSLAQFRLTGATKDYLVVGSDSGRLV 355
           A   GG+L  +R  P T RLR   SV  +G IR++A  R    +   L +  +SG  V
Sbjct: 698 ATTEGGSLTPVRDSPCTPRLR---SVSSYGNIRAVATARSLNKSLQNLSLTEESGGAV 752

>NFIP2_MOUSE (Q91ZP6) NEDD4 family-interacting protein 2 (NEDD4 WW|
           domain-binding protein 5A) (Fragment)
          Length = 311

 Score = 28.9 bits (63), Expect = 7.8
 Identities = 21/56 (37%), Positives = 27/56 (48%), Gaps = 6/56 (10%)
 Frame = +2

Query: 92  ATGAVCAVIGSFSGRD-----SKKSNAAGSSTQEIAVA-RGGTLDLLRPDPETGRL 241
           ATG+  A  G   GR         + AA +ST+E   A R G     +PDPE GR+
Sbjct: 16  ATGSEAAPPGDLGGRTRGGGRGSAAAAATTSTREAEGAERRGDTPARKPDPEAGRM 71


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.315    0.140    0.435 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 31,805,382
Number of Sequences: 219361
Number of extensions: 576209
Number of successful extensions: 1902
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 1873
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1888
length of database: 80,573,946
effective HSP length: 103
effective length of database: 57,979,763
effective search space used: 3478785780
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)