ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl08c05
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1LOX4_ORYSA (Q53RB0) Probable lipoxygenase 4 (EC 1.13.11.12) 175 4e-44
2LOX1_HORVU (P29114) Lipoxygenase 1 (EC 1.13.11.12) 100 1e-21
3LOX1_ARATH (Q06327) Lipoxygenase 1 (EC 1.13.11.12) 96 4e-20
4LOX3_ORYSA (Q7G794) Putative lipoxygenase 3 (EC 1.13.11.12) 92 8e-19
5LOX2_ORYSA (P29250) Lipoxygenase 2 (EC 1.13.11.12) (Lipoxygenase... 85 7e-17
6LOX1_ORYSA (Q76I22) Lipoxygenase 1 (EC 1.13.11.12) (9-lipoxygena... 79 7e-15
7LOXA_LYCES (P38415) Lipoxygenase A (EC 1.13.11.12) 77 3e-14
8LOX1_SOLTU (P37831) Lipoxygenase 1 (EC 1.13.11.12) 69 5e-12
9LOXB_LYCES (P38416) Lipoxygenase B (EC 1.13.11.12) 69 7e-12
10LOX3_PEA (P09918) Seed lipoxygenase-3 (EC 1.13.11.12) 59 7e-09
11LOX2_PEA (P14856) Seed lipoxygenase-2 (EC 1.13.11.12) 57 2e-08
12LOX3_SOYBN (P09186) Seed lipoxygenase-3 (EC 1.13.11.12) (L-3) 55 1e-07
13LOX2_SOYBN (P09439) Seed lipoxygenase-2 (EC 1.13.11.12) (L-2) 52 5e-07
14LOX1_SOYBN (P08170) Seed lipoxygenase-1 (EC 1.13.11.12) (L-1) 52 9e-07
15LOX1_LENCU (P38414) Lipoxygenase (EC 1.13.11.12) 47 2e-05
16LOXX_SOYBN (P24095) Seed lipoxygenase (EC 1.13.11.12) 45 7e-05
17LOX4_SOYBN (P38417) Lipoxygenase-4 (EC 1.13.11.12) (L-4) (VSP94) 44 2e-04
18LOXA_PHAVU (P27480) Lipoxygenase 1 (EC 1.13.11.12) 40 0.003
19ZN205_HUMAN (O95201) Zinc finger protein 205 (Zinc finger protei... 30 2.2
20ZN449_HUMAN (Q6P9G9) Zinc finger protein 449 (Zinc finger and SC... 30 2.8
21IF2P_ARCFU (O29490) Probable translation initiation factor IF-2 30 3.7
22DNAA_BIFLO (Q8G6K0) Chromosomal replication initiator protein dnaA 29 4.8
23ZFP13_MOUSE (P10754) Zinc finger protein 13 (Zfp-13) (Krox-8 pro... 29 4.8
24TRUA_GEOKA (Q5L3Q7) tRNA pseudouridine synthase A (EC 5.4.99.12)... 29 4.8
25ARI2_CAEEL (Q22431) Probable protein ariadne-2 (Ari-2) 28 8.2

>LOX4_ORYSA (Q53RB0) Probable lipoxygenase 4 (EC 1.13.11.12)|
          Length = 877

 Score =  175 bits (444), Expect = 4e-44
 Identities = 85/107 (79%), Positives = 93/107 (86%)
 Frame = +3

Query: 132 MLLHGLVDRLTGKNKEAWKEGKIRGTAVLVKSDVLDLGDFHASLLDGVHKILGKDDGVSF 311
           M + G  DRLTG+NKEAWKEG+IRGTAVLVK DVL LGDFHASLLDGVH ILG  +GV+F
Sbjct: 1   MQVQGFFDRLTGRNKEAWKEGRIRGTAVLVKKDVLGLGDFHASLLDGVHNILGHKEGVAF 60

Query: 312 RLVSATAPDPQNGSRGKMGKPAHLEEMVVTMKSTAAXESVFKVTFEW 452
           RLVSATA DP NG RGK+GKPAHLEE+VVTMKSTAA ESVF+V FEW
Sbjct: 61  RLVSATARDPSNGGRGKLGKPAHLEELVVTMKSTAAGESVFRVAFEW 107



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>LOX1_HORVU (P29114) Lipoxygenase 1 (EC 1.13.11.12)|
          Length = 862

 Score =  100 bits (250), Expect = 1e-21
 Identities = 52/107 (48%), Positives = 74/107 (69%)
 Frame = +3

Query: 132 MLLHGLVDRLTGKNKEAWKEGKIRGTAVLVKSDVLDLGDFHASLLDGVHKILGKDDGVSF 311
           MLL GL+D LTG NK A    +++GT VL++ +VLDL DF A+++DG+ + LGK  GV+ 
Sbjct: 1   MLLGGLIDTLTGANKSA----RLKGTVVLMRKNVLDLNDFGATIIDGIGEFLGK--GVTC 54

Query: 312 RLVSATAPDPQNGSRGKMGKPAHLEEMVVTMKSTAAXESVFKVTFEW 452
           +L+S+TA D  NG RGK+G  A LE+ V ++ S    ES F +TF+W
Sbjct: 55  QLISSTAVDQDNGGRGKVGAEAELEQWVTSLPSLTTGESKFGLTFDW 101



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>LOX1_ARATH (Q06327) Lipoxygenase 1 (EC 1.13.11.12)|
          Length = 859

 Score = 95.9 bits (237), Expect = 4e-20
 Identities = 50/102 (49%), Positives = 69/102 (67%)
 Frame = +3

Query: 147 LVDRLTGKNKEAWKEGKIRGTAVLVKSDVLDLGDFHASLLDGVHKILGKDDGVSFRLVSA 326
           L D LTG   E   + K++GT VL+K +VLD  DF+AS LD +H+ LG    ++ RLVS+
Sbjct: 5   LRDLLTGGGNETTTK-KVKGTVVLMKKNVLDFNDFNASFLDRLHEFLGNK--ITLRLVSS 61

Query: 327 TAPDPQNGSRGKMGKPAHLEEMVVTMKSTAAXESVFKVTFEW 452
              D +NGS+GK+GK AHLE+ + T+ S  A ES FKVTF++
Sbjct: 62  DVTDSENGSKGKLGKAAHLEDWITTITSLTAGESAFKVTFDY 103



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>LOX3_ORYSA (Q7G794) Putative lipoxygenase 3 (EC 1.13.11.12)|
          Length = 866

 Score = 91.7 bits (226), Expect = 8e-19
 Identities = 47/107 (43%), Positives = 76/107 (71%), Gaps = 1/107 (0%)
 Frame = +3

Query: 135 LLHGLVDRLTGKNKEAWKEGKIRGTAVLVKSDVLDLGDFHASLLDGVHKILGKDDGVSFR 314
           +L G++D +TG +K++    +++GT VL++ +VLDL DF A+++DG+ + LGK  GV+ +
Sbjct: 1   MLGGIIDTITGSSKQS----RLKGTVVLMRKNVLDLNDFGATVIDGLGEFLGK--GVTCQ 54

Query: 315 LVSATAPDPQNGSRGKMGKPAHLEE-MVVTMKSTAAXESVFKVTFEW 452
           L+S+TA DP NG+RGK+G  A LE+ +  ++ S    ES F VTF+W
Sbjct: 55  LISSTAVDPNNGNRGKVGAEASLEQWLTSSLPSLTTGESRFGVTFDW 101



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>LOX2_ORYSA (P29250) Lipoxygenase 2 (EC 1.13.11.12) (Lipoxygenase L-2)|
          Length = 870

 Score = 85.1 bits (209), Expect = 7e-17
 Identities = 42/106 (39%), Positives = 70/106 (66%)
 Frame = +3

Query: 135 LLHGLVDRLTGKNKEAWKEGKIRGTAVLVKSDVLDLGDFHASLLDGVHKILGKDDGVSFR 314
           +L G++  LTG      K  +++G+ VL++ + LD+ DF A+++DG+ + LG+  GV+ +
Sbjct: 1   MLGGIIGGLTGN-----KNARLKGSLVLMRKNALDINDFGATVIDGISEFLGR--GVTCQ 53

Query: 315 LVSATAPDPQNGSRGKMGKPAHLEEMVVTMKSTAAXESVFKVTFEW 452
           LVS++  DP NG+RG++G  A LE+ + ++ S    ES F VTFEW
Sbjct: 54  LVSSSLVDPNNGNRGRVGTEASLEQWLTSLPSLTTGESKFGVTFEW 99



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>LOX1_ORYSA (Q76I22) Lipoxygenase 1 (EC 1.13.11.12) (9-lipoxygenase) (r9-LOX1)|
          Length = 863

 Score = 78.6 bits (192), Expect = 7e-15
 Identities = 46/106 (43%), Positives = 63/106 (59%)
 Frame = +3

Query: 135 LLHGLVDRLTGKNKEAWKEGKIRGTAVLVKSDVLDLGDFHASLLDGVHKILGKDDGVSFR 314
           +L GL D+LTGKN       KI+G AVL+   +LD  DF ASLLD VH++ G  + ++ +
Sbjct: 1   MLGGLKDKLTGKNGN-----KIKGLAVLMSRKLLDPRDFTASLLDNVHEVFG--NSITCQ 53

Query: 315 LVSATAPDPQNGSRGKMGKPAHLEEMVVTMKSTAAXESVFKVTFEW 452
           LVSAT  D  N  RG +G  A+LE+ +  + S +  ES   V F W
Sbjct: 54  LVSATVADQNNEGRGIVGSEANLEQGLTDLPSVSQGESKLTVRFNW 99



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>LOXA_LYCES (P38415) Lipoxygenase A (EC 1.13.11.12)|
          Length = 860

 Score = 76.6 bits (187), Expect = 3e-14
 Identities = 42/106 (39%), Positives = 64/106 (60%)
 Frame = +3

Query: 135 LLHGLVDRLTGKNKEAWKEGKIRGTAVLVKSDVLDLGDFHASLLDGVHKILGKDDGVSFR 314
           +L  LV  L G + ++    K++GT V++K + LD  D   SL D + + LG+   VSF+
Sbjct: 1   MLGQLVGGLIGGHHDS---KKVKGTVVMMKKNALDFTDLAGSLTDKIFEALGQK--VSFQ 55

Query: 315 LVSATAPDPQNGSRGKMGKPAHLEEMVVTMKSTAAXESVFKVTFEW 452
           L+S+   DP NG +GK   PA+LE  ++T+   AA E+ F VTF+W
Sbjct: 56  LISSVQSDPANGLQGKHSNPAYLENFLLTLTPLAAGETAFGVTFDW 101



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>LOX1_SOLTU (P37831) Lipoxygenase 1 (EC 1.13.11.12)|
          Length = 861

 Score = 68.9 bits (167), Expect = 5e-12
 Identities = 36/87 (41%), Positives = 53/87 (60%), Gaps = 1/87 (1%)
 Frame = +3

Query: 195 KIRGTAVLVKSDVLDLGDFHASLLDGVHKILGKDDGVSFRLVSATAPDPQNGSRGKMGKP 374
           K++GT V++  +VLD  D   SL   +  +LG+   VSF+L+S+   DP NG +GK   P
Sbjct: 18  KVKGTVVMMNKNVLDFTDLAGSLTGKIFDVLGQK--VSFQLISSVQGDPTNGLQGKHSNP 75

Query: 375 AHLEEMVVTMKS-TAAXESVFKVTFEW 452
           A+LE  + T+   TA  E+ F VTF+W
Sbjct: 76  AYLENSLFTLTPLTAGSETAFGVTFDW 102



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>LOXB_LYCES (P38416) Lipoxygenase B (EC 1.13.11.12)|
          Length = 859

 Score = 68.6 bits (166), Expect = 7e-12
 Identities = 39/107 (36%), Positives = 62/107 (57%)
 Frame = +3

Query: 132 MLLHGLVDRLTGKNKEAWKEGKIRGTAVLVKSDVLDLGDFHASLLDGVHKILGKDDGVSF 311
           M L G+VD + GK+       K++G  +L+K +VLD  +  AS++DG+  +LG+   VS 
Sbjct: 1   MSLGGIVDAILGKDDRP----KVKGRVILMKKNVLDFINIGASVVDGISDLLGQK--VSI 54

Query: 312 RLVSATAPDPQNGSRGKMGKPAHLEEMVVTMKSTAAXESVFKVTFEW 452
           +L+S +     +G  GK+  PA+LE  +  +    A ES F VTF+W
Sbjct: 55  QLISGSVN--YDGLEGKLSNPAYLESWLTDITPITAGESTFSVTFDW 99



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>LOX3_PEA (P09918) Seed lipoxygenase-3 (EC 1.13.11.12)|
          Length = 861

 Score = 58.5 bits (140), Expect = 7e-09
 Identities = 35/99 (35%), Positives = 54/99 (54%), Gaps = 13/99 (13%)
 Frame = +3

Query: 195 KIRGTAVLVKSDVLDLG-------------DFHASLLDGVHKILGKDDGVSFRLVSATAP 335
           KI+GT VL++ +VLD+              D   S +D +   LG+   VS +L+SAT P
Sbjct: 14  KIKGTVVLMRKNVLDINSLTTVGGVIGQGFDILGSTVDNLTAFLGRS--VSLQLISATKP 71

Query: 336 DPQNGSRGKMGKPAHLEEMVVTMKSTAAXESVFKVTFEW 452
           D     +GK+GK   LE ++ ++ +  A +S FK+ FEW
Sbjct: 72  DATG--KGKLGKATFLEGIISSLPTLGAGQSAFKIHFEW 108



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>LOX2_PEA (P14856) Seed lipoxygenase-2 (EC 1.13.11.12)|
          Length = 864

 Score = 57.4 bits (137), Expect = 2e-08
 Identities = 41/107 (38%), Positives = 57/107 (53%), Gaps = 18/107 (16%)
 Frame = +3

Query: 186 KEGKIRGTAVLVKSDVLDL--------GDFHA----------SLLDGVHKILGKDDGVSF 311
           K  KIRGT VL++ +VLD         G+ H           S LDG+   LG+   VS 
Sbjct: 11  KGHKIRGTVVLMRKNVLDFNTIVSIGGGNVHGVIDSGINIIGSTLDGLTAFLGRS--VSL 68

Query: 312 RLVSATAPDPQNGSRGKMGKPAHLEEMVVTMKSTAAXESVFKVTFEW 452
           +L+SAT  D  NG +GK+GK   LE ++ ++ +  A ES F + FEW
Sbjct: 69  QLISATKSDA-NG-KGKVGKDTFLEGVLASLPTLGAGESAFNIHFEW 113



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>LOX3_SOYBN (P09186) Seed lipoxygenase-3 (EC 1.13.11.12) (L-3)|
          Length = 857

 Score = 54.7 bits (130), Expect = 1e-07
 Identities = 36/99 (36%), Positives = 54/99 (54%), Gaps = 13/99 (13%)
 Frame = +3

Query: 195 KIRGTAVLVKSDVLDLG-------------DFHASLLDGVHKILGKDDGVSFRLVSATAP 335
           KI+GT VL++ +VL +              D   S LD +   LG+   VS +L+SAT  
Sbjct: 11  KIKGTVVLMRKNVLHVNSVTSVGGIIGQGLDLVGSTLDTLTAFLGRP--VSLQLISATKA 68

Query: 336 DPQNGSRGKMGKPAHLEEMVVTMKSTAAXESVFKVTFEW 452
           D  NG +GK+GK   LE ++ ++ +  A +S FK+ FEW
Sbjct: 69  DA-NG-KGKLGKATFLEGIITSLPTLGAGQSAFKINFEW 105



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>LOX2_SOYBN (P09439) Seed lipoxygenase-2 (EC 1.13.11.12) (L-2)|
          Length = 865

 Score = 52.4 bits (124), Expect = 5e-07
 Identities = 36/104 (34%), Positives = 53/104 (50%), Gaps = 18/104 (17%)
 Frame = +3

Query: 195 KIRGTAVLVKSDVLDLGDFH------------------ASLLDGVHKILGKDDGVSFRLV 320
           KI+GT VL++ +VLD                        S LD +   LG+   V+ +L+
Sbjct: 18  KIKGTVVLMRKNVLDFNSVADLTKGNVGGLIGTGLNVVGSTLDNLTAFLGRS--VALQLI 75

Query: 321 SATAPDPQNGSRGKMGKPAHLEEMVVTMKSTAAXESVFKVTFEW 452
           SAT P   NG +GK+GK   LE ++V++ +  A ES F + FEW
Sbjct: 76  SATKP-LANG-KGKVGKDTFLEGIIVSLPTLGAGESAFNIQFEW 117



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>LOX1_SOYBN (P08170) Seed lipoxygenase-1 (EC 1.13.11.12) (L-1)|
          Length = 839

 Score = 51.6 bits (122), Expect = 9e-07
 Identities = 31/86 (36%), Positives = 49/86 (56%)
 Frame = +3

Query: 195 KIRGTAVLVKSDVLDLGDFHASLLDGVHKILGKDDGVSFRLVSATAPDPQNGSRGKMGKP 374
           KI+GT VL+  + L++     S +D ++  LG+   VS +L+SAT  D     +GK+GK 
Sbjct: 7   KIKGTVVLMPKNELEVNP-DGSAVDNLNAFLGRS--VSLQLISATKADAHG--KGKVGKD 61

Query: 375 AHLEEMVVTMKSTAAXESVFKVTFEW 452
             LE +  ++ +  A ES F + FEW
Sbjct: 62  TFLEGINTSLPTLGAGESAFNIHFEW 87



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>LOX1_LENCU (P38414) Lipoxygenase (EC 1.13.11.12)|
          Length = 866

 Score = 47.4 bits (111), Expect = 2e-05
 Identities = 31/106 (29%), Positives = 50/106 (47%), Gaps = 20/106 (18%)
 Frame = +3

Query: 195 KIRGTAVLVKSDVLDL--------------------GDFHASLLDGVHKILGKDDGVSFR 314
           K++GT +L++ +VLD+                    G    S++D     LG+   V  R
Sbjct: 11  KLKGTVILMQKNVLDINALTAAQSPSGIIGGAFGVVGSIAGSIIDTATAFLGRS--VRLR 68

Query: 315 LVSATAPDPQNGSRGKMGKPAHLEEMVVTMKSTAAXESVFKVTFEW 452
           L+SAT  D     +GK+ K A LE ++ ++ +    +S F V FEW
Sbjct: 69  LISATVADASG--KGKVSKEAFLEGLLTSIPTLGDKQSAFSVHFEW 112



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>LOXX_SOYBN (P24095) Seed lipoxygenase (EC 1.13.11.12)|
          Length = 864

 Score = 45.4 bits (106), Expect = 7e-05
 Identities = 32/109 (29%), Positives = 50/109 (45%), Gaps = 20/109 (18%)
 Frame = +3

Query: 186 KEGKIRGTAVLVKSDVLDLGDFHA----SLLDGVHKILGKD----------------DGV 305
           K  KI+GT VL+  +VLD     +     ++D    ILG+                   +
Sbjct: 7   KGQKIKGTVVLMPKNVLDFNAITSIGKGGVIDTATGILGQGVSLVGGVIDTATSFLGRNI 66

Query: 306 SFRLVSATAPDPQNGSRGKMGKPAHLEEMVVTMKSTAAXESVFKVTFEW 452
           S +L+SAT  D      GK+GK  +LE+ + T+ +  A +  F + FEW
Sbjct: 67  SMQLISATQTD--GSGNGKVGKEVYLEKHLPTLPTLGARQDAFSIFFEW 113



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>LOX4_SOYBN (P38417) Lipoxygenase-4 (EC 1.13.11.12) (L-4) (VSP94)|
          Length = 853

 Score = 43.5 bits (101), Expect = 2e-04
 Identities = 32/102 (31%), Positives = 50/102 (49%), Gaps = 13/102 (12%)
 Frame = +3

Query: 186 KEGKIRGTAVLVKSDVLDLGD-------------FHASLLDGVHKILGKDDGVSFRLVSA 326
           K  KI+GT V+++ +VLD+               F  S +D +     K   +S +L+SA
Sbjct: 7   KGQKIKGTMVVMQKNVLDINSITSVGGIVDQGLGFIGSAVDALTFAATK---ISIQLISA 63

Query: 327 TAPDPQNGSRGKMGKPAHLEEMVVTMKSTAAXESVFKVTFEW 452
           T  D   G +GK+GK  +L    +T+ +  A E  + V FEW
Sbjct: 64  TKAD---GGKGKIGKSTNLRGK-ITLPTLGAGEQAYDVNFEW 101



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>LOXA_PHAVU (P27480) Lipoxygenase 1 (EC 1.13.11.12)|
          Length = 862

 Score = 40.0 bits (92), Expect = 0.003
 Identities = 28/108 (25%), Positives = 49/108 (45%), Gaps = 22/108 (20%)
 Frame = +3

Query: 195 KIRGTAVLVKSDVLDLGDFHAS----------------------LLDGVHKILGKDDGVS 308
           KI+GT VL+  +V D  +F ++                      ++DG   I  ++  ++
Sbjct: 10  KIKGTVVLMTKNVFDFNEFVSTTRGGIVGAAGGLFGAATDIVGGIVDGATAIFSRN--IA 67

Query: 309 FRLVSATAPDPQNGSRGKMGKPAHLEEMVVTMKSTAAXESVFKVTFEW 452
            +L+SAT  D      GK+GK   LE+ + ++ +    +  F V FEW
Sbjct: 68  IQLISATKTDGLGN--GKVGKQTFLEKHLPSLPNLGDRQDAFNVYFEW 113



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>ZN205_HUMAN (O95201) Zinc finger protein 205 (Zinc finger protein 210)|
          Length = 504

 Score = 30.4 bits (67), Expect = 2.2
 Identities = 15/47 (31%), Positives = 22/47 (46%), Gaps = 3/47 (6%)
 Frame = +3

Query: 12  HHCPPCAKCISKGTG--TH-RLCSSCSALPCLRCRTREQRRGEMLLH 143
           H CP CAKC ++ +   TH R  +     PC  C     +R  ++ H
Sbjct: 370 HKCPICAKCFTQSSALVTHQRTHTGVKPYPCPECGKCFSQRSNLIAH 416



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>ZN449_HUMAN (Q6P9G9) Zinc finger protein 449 (Zinc finger and SCAN|
           domain-containing protein 19)
          Length = 518

 Score = 30.0 bits (66), Expect = 2.8
 Identities = 16/47 (34%), Positives = 20/47 (42%), Gaps = 3/47 (6%)
 Frame = +3

Query: 12  HHCPPCAKCI---SKGTGTHRLCSSCSALPCLRCRTREQRRGEMLLH 143
           H CP C KC    S+ TG  R+ S      C  C  R  R  ++  H
Sbjct: 323 HRCPQCGKCFARKSQLTGHQRIHSGEEPHKCPECGKRFLRSSDLYRH 369



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>IF2P_ARCFU (O29490) Probable translation initiation factor IF-2|
          Length = 595

 Score = 29.6 bits (65), Expect = 3.7
 Identities = 27/77 (35%), Positives = 35/77 (45%), Gaps = 7/77 (9%)
 Frame = +3

Query: 132 MLLHGLVDRLTGKNKEAWKEGKIRGTAVLVKSDVLDLG-DFHASLLDGVHK------ILG 290
           ++L GL  R   KN     EGK RGT + VK +   LG    A L DG  K      I G
Sbjct: 215 LILVGLAQRYLEKNLRLHIEGKGRGTVLEVKEE-RGLGVTCDAILYDGTLKVGDRIAIAG 273

Query: 291 KDDGVSFRLVSATAPDP 341
           KD+ +   + +   P P
Sbjct: 274 KDEVIVTNVKAILKPPP 290



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>DNAA_BIFLO (Q8G6K0) Chromosomal replication initiator protein dnaA|
          Length = 500

 Score = 29.3 bits (64), Expect = 4.8
 Identities = 20/73 (27%), Positives = 35/73 (47%), Gaps = 4/73 (5%)
 Frame = +3

Query: 189 EGKIRGTAVLV--KSDVLDL--GDFHASLLDGVHKILGKDDGVSFRLVSATAPDPQNGSR 356
           EG    T VL    +D L    GD + SLL  +  + G++   +F++V  T P+P + ++
Sbjct: 43  EGVFGSTIVLCVDNNDTLQAIQGDLNDSLLQALRTVTGENMFPAFKVVPKTEPEPLSEAK 102

Query: 357 GKMGKPAHLEEMV 395
                P+ +   V
Sbjct: 103 PAQPYPSEISPTV 115



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>ZFP13_MOUSE (P10754) Zinc finger protein 13 (Zfp-13) (Krox-8 protein)|
          Length = 512

 Score = 29.3 bits (64), Expect = 4.8
 Identities = 14/47 (29%), Positives = 22/47 (46%), Gaps = 3/47 (6%)
 Frame = +3

Query: 12  HHCPPCAKCISKGTG--TH-RLCSSCSALPCLRCRTREQRRGEMLLH 143
           H CP C+KC ++ +   TH R  +     PC  C     +R  ++ H
Sbjct: 378 HKCPICSKCFTQSSALVTHQRTHTGVKPYPCPECGKCFSQRSNLIAH 424



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>TRUA_GEOKA (Q5L3Q7) tRNA pseudouridine synthase A (EC 5.4.99.12) (tRNA-uridine|
           isomerase I) (tRNA pseudouridylate synthase I)
          Length = 258

 Score = 29.3 bits (64), Expect = 4.8
 Identities = 31/113 (27%), Positives = 41/113 (36%), Gaps = 2/113 (1%)
 Frame = +3

Query: 3   PYHHHCPPCAKCISKGTGTHRLCSSCSALPCLRCRTREQRRGEMLLHG--LVDRLTGKNK 176
           PY  H     + +    GTH   S CSA   +  R R   R E+   G  L  R  G   
Sbjct: 134 PYSLHISAMNEALRLLHGTHDFTSFCSAKTSIEDRVRTMYRAEVKADGPMLEFRFVG--- 190

Query: 177 EAWKEGKIRGTAVLVKSDVLDLGDFHASLLDGVHKILGKDDGVSFRLVSATAP 335
                G +     ++   VL++G    S  D    +  KD     RL   TAP
Sbjct: 191 ----SGFLYNMVRIIVGTVLEIGQGKRSPADISTLLAAKDR----RLAGPTAP 235



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>ARI2_CAEEL (Q22431) Probable protein ariadne-2 (Ari-2)|
          Length = 482

 Score = 28.5 bits (62), Expect = 8.2
 Identities = 12/30 (40%), Positives = 14/30 (46%)
 Frame = +3

Query: 18  CPPCAKCISKGTGTHRLCSSCSALPCLRCR 107
           CP C  CI K  G       C+ + C RCR
Sbjct: 287 CPQCHSCIEKAGG-------CNHIQCTRCR 309


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.312    0.126    0.378 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 44,475,675
Number of Sequences: 219361
Number of extensions: 821646
Number of successful extensions: 2964
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 2838
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2946
length of database: 80,573,946
effective HSP length: 102
effective length of database: 58,199,124
effective search space used: 2793557952
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
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