Clone Name | bastl08c05 |
---|---|
Clone Library Name | barley_pub |
>LOX4_ORYSA (Q53RB0) Probable lipoxygenase 4 (EC 1.13.11.12)| Length = 877 Score = 175 bits (444), Expect = 4e-44 Identities = 85/107 (79%), Positives = 93/107 (86%) Frame = +3 Query: 132 MLLHGLVDRLTGKNKEAWKEGKIRGTAVLVKSDVLDLGDFHASLLDGVHKILGKDDGVSF 311 M + G DRLTG+NKEAWKEG+IRGTAVLVK DVL LGDFHASLLDGVH ILG +GV+F Sbjct: 1 MQVQGFFDRLTGRNKEAWKEGRIRGTAVLVKKDVLGLGDFHASLLDGVHNILGHKEGVAF 60 Query: 312 RLVSATAPDPQNGSRGKMGKPAHLEEMVVTMKSTAAXESVFKVTFEW 452 RLVSATA DP NG RGK+GKPAHLEE+VVTMKSTAA ESVF+V FEW Sbjct: 61 RLVSATARDPSNGGRGKLGKPAHLEELVVTMKSTAAGESVFRVAFEW 107
>LOX1_HORVU (P29114) Lipoxygenase 1 (EC 1.13.11.12)| Length = 862 Score = 100 bits (250), Expect = 1e-21 Identities = 52/107 (48%), Positives = 74/107 (69%) Frame = +3 Query: 132 MLLHGLVDRLTGKNKEAWKEGKIRGTAVLVKSDVLDLGDFHASLLDGVHKILGKDDGVSF 311 MLL GL+D LTG NK A +++GT VL++ +VLDL DF A+++DG+ + LGK GV+ Sbjct: 1 MLLGGLIDTLTGANKSA----RLKGTVVLMRKNVLDLNDFGATIIDGIGEFLGK--GVTC 54 Query: 312 RLVSATAPDPQNGSRGKMGKPAHLEEMVVTMKSTAAXESVFKVTFEW 452 +L+S+TA D NG RGK+G A LE+ V ++ S ES F +TF+W Sbjct: 55 QLISSTAVDQDNGGRGKVGAEAELEQWVTSLPSLTTGESKFGLTFDW 101
>LOX1_ARATH (Q06327) Lipoxygenase 1 (EC 1.13.11.12)| Length = 859 Score = 95.9 bits (237), Expect = 4e-20 Identities = 50/102 (49%), Positives = 69/102 (67%) Frame = +3 Query: 147 LVDRLTGKNKEAWKEGKIRGTAVLVKSDVLDLGDFHASLLDGVHKILGKDDGVSFRLVSA 326 L D LTG E + K++GT VL+K +VLD DF+AS LD +H+ LG ++ RLVS+ Sbjct: 5 LRDLLTGGGNETTTK-KVKGTVVLMKKNVLDFNDFNASFLDRLHEFLGNK--ITLRLVSS 61 Query: 327 TAPDPQNGSRGKMGKPAHLEEMVVTMKSTAAXESVFKVTFEW 452 D +NGS+GK+GK AHLE+ + T+ S A ES FKVTF++ Sbjct: 62 DVTDSENGSKGKLGKAAHLEDWITTITSLTAGESAFKVTFDY 103
>LOX3_ORYSA (Q7G794) Putative lipoxygenase 3 (EC 1.13.11.12)| Length = 866 Score = 91.7 bits (226), Expect = 8e-19 Identities = 47/107 (43%), Positives = 76/107 (71%), Gaps = 1/107 (0%) Frame = +3 Query: 135 LLHGLVDRLTGKNKEAWKEGKIRGTAVLVKSDVLDLGDFHASLLDGVHKILGKDDGVSFR 314 +L G++D +TG +K++ +++GT VL++ +VLDL DF A+++DG+ + LGK GV+ + Sbjct: 1 MLGGIIDTITGSSKQS----RLKGTVVLMRKNVLDLNDFGATVIDGLGEFLGK--GVTCQ 54 Query: 315 LVSATAPDPQNGSRGKMGKPAHLEE-MVVTMKSTAAXESVFKVTFEW 452 L+S+TA DP NG+RGK+G A LE+ + ++ S ES F VTF+W Sbjct: 55 LISSTAVDPNNGNRGKVGAEASLEQWLTSSLPSLTTGESRFGVTFDW 101
>LOX2_ORYSA (P29250) Lipoxygenase 2 (EC 1.13.11.12) (Lipoxygenase L-2)| Length = 870 Score = 85.1 bits (209), Expect = 7e-17 Identities = 42/106 (39%), Positives = 70/106 (66%) Frame = +3 Query: 135 LLHGLVDRLTGKNKEAWKEGKIRGTAVLVKSDVLDLGDFHASLLDGVHKILGKDDGVSFR 314 +L G++ LTG K +++G+ VL++ + LD+ DF A+++DG+ + LG+ GV+ + Sbjct: 1 MLGGIIGGLTGN-----KNARLKGSLVLMRKNALDINDFGATVIDGISEFLGR--GVTCQ 53 Query: 315 LVSATAPDPQNGSRGKMGKPAHLEEMVVTMKSTAAXESVFKVTFEW 452 LVS++ DP NG+RG++G A LE+ + ++ S ES F VTFEW Sbjct: 54 LVSSSLVDPNNGNRGRVGTEASLEQWLTSLPSLTTGESKFGVTFEW 99
>LOX1_ORYSA (Q76I22) Lipoxygenase 1 (EC 1.13.11.12) (9-lipoxygenase) (r9-LOX1)| Length = 863 Score = 78.6 bits (192), Expect = 7e-15 Identities = 46/106 (43%), Positives = 63/106 (59%) Frame = +3 Query: 135 LLHGLVDRLTGKNKEAWKEGKIRGTAVLVKSDVLDLGDFHASLLDGVHKILGKDDGVSFR 314 +L GL D+LTGKN KI+G AVL+ +LD DF ASLLD VH++ G + ++ + Sbjct: 1 MLGGLKDKLTGKNGN-----KIKGLAVLMSRKLLDPRDFTASLLDNVHEVFG--NSITCQ 53 Query: 315 LVSATAPDPQNGSRGKMGKPAHLEEMVVTMKSTAAXESVFKVTFEW 452 LVSAT D N RG +G A+LE+ + + S + ES V F W Sbjct: 54 LVSATVADQNNEGRGIVGSEANLEQGLTDLPSVSQGESKLTVRFNW 99
>LOXA_LYCES (P38415) Lipoxygenase A (EC 1.13.11.12)| Length = 860 Score = 76.6 bits (187), Expect = 3e-14 Identities = 42/106 (39%), Positives = 64/106 (60%) Frame = +3 Query: 135 LLHGLVDRLTGKNKEAWKEGKIRGTAVLVKSDVLDLGDFHASLLDGVHKILGKDDGVSFR 314 +L LV L G + ++ K++GT V++K + LD D SL D + + LG+ VSF+ Sbjct: 1 MLGQLVGGLIGGHHDS---KKVKGTVVMMKKNALDFTDLAGSLTDKIFEALGQK--VSFQ 55 Query: 315 LVSATAPDPQNGSRGKMGKPAHLEEMVVTMKSTAAXESVFKVTFEW 452 L+S+ DP NG +GK PA+LE ++T+ AA E+ F VTF+W Sbjct: 56 LISSVQSDPANGLQGKHSNPAYLENFLLTLTPLAAGETAFGVTFDW 101
>LOX1_SOLTU (P37831) Lipoxygenase 1 (EC 1.13.11.12)| Length = 861 Score = 68.9 bits (167), Expect = 5e-12 Identities = 36/87 (41%), Positives = 53/87 (60%), Gaps = 1/87 (1%) Frame = +3 Query: 195 KIRGTAVLVKSDVLDLGDFHASLLDGVHKILGKDDGVSFRLVSATAPDPQNGSRGKMGKP 374 K++GT V++ +VLD D SL + +LG+ VSF+L+S+ DP NG +GK P Sbjct: 18 KVKGTVVMMNKNVLDFTDLAGSLTGKIFDVLGQK--VSFQLISSVQGDPTNGLQGKHSNP 75 Query: 375 AHLEEMVVTMKS-TAAXESVFKVTFEW 452 A+LE + T+ TA E+ F VTF+W Sbjct: 76 AYLENSLFTLTPLTAGSETAFGVTFDW 102
>LOXB_LYCES (P38416) Lipoxygenase B (EC 1.13.11.12)| Length = 859 Score = 68.6 bits (166), Expect = 7e-12 Identities = 39/107 (36%), Positives = 62/107 (57%) Frame = +3 Query: 132 MLLHGLVDRLTGKNKEAWKEGKIRGTAVLVKSDVLDLGDFHASLLDGVHKILGKDDGVSF 311 M L G+VD + GK+ K++G +L+K +VLD + AS++DG+ +LG+ VS Sbjct: 1 MSLGGIVDAILGKDDRP----KVKGRVILMKKNVLDFINIGASVVDGISDLLGQK--VSI 54 Query: 312 RLVSATAPDPQNGSRGKMGKPAHLEEMVVTMKSTAAXESVFKVTFEW 452 +L+S + +G GK+ PA+LE + + A ES F VTF+W Sbjct: 55 QLISGSVN--YDGLEGKLSNPAYLESWLTDITPITAGESTFSVTFDW 99
>LOX3_PEA (P09918) Seed lipoxygenase-3 (EC 1.13.11.12)| Length = 861 Score = 58.5 bits (140), Expect = 7e-09 Identities = 35/99 (35%), Positives = 54/99 (54%), Gaps = 13/99 (13%) Frame = +3 Query: 195 KIRGTAVLVKSDVLDLG-------------DFHASLLDGVHKILGKDDGVSFRLVSATAP 335 KI+GT VL++ +VLD+ D S +D + LG+ VS +L+SAT P Sbjct: 14 KIKGTVVLMRKNVLDINSLTTVGGVIGQGFDILGSTVDNLTAFLGRS--VSLQLISATKP 71 Query: 336 DPQNGSRGKMGKPAHLEEMVVTMKSTAAXESVFKVTFEW 452 D +GK+GK LE ++ ++ + A +S FK+ FEW Sbjct: 72 DATG--KGKLGKATFLEGIISSLPTLGAGQSAFKIHFEW 108
>LOX2_PEA (P14856) Seed lipoxygenase-2 (EC 1.13.11.12)| Length = 864 Score = 57.4 bits (137), Expect = 2e-08 Identities = 41/107 (38%), Positives = 57/107 (53%), Gaps = 18/107 (16%) Frame = +3 Query: 186 KEGKIRGTAVLVKSDVLDL--------GDFHA----------SLLDGVHKILGKDDGVSF 311 K KIRGT VL++ +VLD G+ H S LDG+ LG+ VS Sbjct: 11 KGHKIRGTVVLMRKNVLDFNTIVSIGGGNVHGVIDSGINIIGSTLDGLTAFLGRS--VSL 68 Query: 312 RLVSATAPDPQNGSRGKMGKPAHLEEMVVTMKSTAAXESVFKVTFEW 452 +L+SAT D NG +GK+GK LE ++ ++ + A ES F + FEW Sbjct: 69 QLISATKSDA-NG-KGKVGKDTFLEGVLASLPTLGAGESAFNIHFEW 113
>LOX3_SOYBN (P09186) Seed lipoxygenase-3 (EC 1.13.11.12) (L-3)| Length = 857 Score = 54.7 bits (130), Expect = 1e-07 Identities = 36/99 (36%), Positives = 54/99 (54%), Gaps = 13/99 (13%) Frame = +3 Query: 195 KIRGTAVLVKSDVLDLG-------------DFHASLLDGVHKILGKDDGVSFRLVSATAP 335 KI+GT VL++ +VL + D S LD + LG+ VS +L+SAT Sbjct: 11 KIKGTVVLMRKNVLHVNSVTSVGGIIGQGLDLVGSTLDTLTAFLGRP--VSLQLISATKA 68 Query: 336 DPQNGSRGKMGKPAHLEEMVVTMKSTAAXESVFKVTFEW 452 D NG +GK+GK LE ++ ++ + A +S FK+ FEW Sbjct: 69 DA-NG-KGKLGKATFLEGIITSLPTLGAGQSAFKINFEW 105
>LOX2_SOYBN (P09439) Seed lipoxygenase-2 (EC 1.13.11.12) (L-2)| Length = 865 Score = 52.4 bits (124), Expect = 5e-07 Identities = 36/104 (34%), Positives = 53/104 (50%), Gaps = 18/104 (17%) Frame = +3 Query: 195 KIRGTAVLVKSDVLDLGDFH------------------ASLLDGVHKILGKDDGVSFRLV 320 KI+GT VL++ +VLD S LD + LG+ V+ +L+ Sbjct: 18 KIKGTVVLMRKNVLDFNSVADLTKGNVGGLIGTGLNVVGSTLDNLTAFLGRS--VALQLI 75 Query: 321 SATAPDPQNGSRGKMGKPAHLEEMVVTMKSTAAXESVFKVTFEW 452 SAT P NG +GK+GK LE ++V++ + A ES F + FEW Sbjct: 76 SATKP-LANG-KGKVGKDTFLEGIIVSLPTLGAGESAFNIQFEW 117
>LOX1_SOYBN (P08170) Seed lipoxygenase-1 (EC 1.13.11.12) (L-1)| Length = 839 Score = 51.6 bits (122), Expect = 9e-07 Identities = 31/86 (36%), Positives = 49/86 (56%) Frame = +3 Query: 195 KIRGTAVLVKSDVLDLGDFHASLLDGVHKILGKDDGVSFRLVSATAPDPQNGSRGKMGKP 374 KI+GT VL+ + L++ S +D ++ LG+ VS +L+SAT D +GK+GK Sbjct: 7 KIKGTVVLMPKNELEVNP-DGSAVDNLNAFLGRS--VSLQLISATKADAHG--KGKVGKD 61 Query: 375 AHLEEMVVTMKSTAAXESVFKVTFEW 452 LE + ++ + A ES F + FEW Sbjct: 62 TFLEGINTSLPTLGAGESAFNIHFEW 87
>LOX1_LENCU (P38414) Lipoxygenase (EC 1.13.11.12)| Length = 866 Score = 47.4 bits (111), Expect = 2e-05 Identities = 31/106 (29%), Positives = 50/106 (47%), Gaps = 20/106 (18%) Frame = +3 Query: 195 KIRGTAVLVKSDVLDL--------------------GDFHASLLDGVHKILGKDDGVSFR 314 K++GT +L++ +VLD+ G S++D LG+ V R Sbjct: 11 KLKGTVILMQKNVLDINALTAAQSPSGIIGGAFGVVGSIAGSIIDTATAFLGRS--VRLR 68 Query: 315 LVSATAPDPQNGSRGKMGKPAHLEEMVVTMKSTAAXESVFKVTFEW 452 L+SAT D +GK+ K A LE ++ ++ + +S F V FEW Sbjct: 69 LISATVADASG--KGKVSKEAFLEGLLTSIPTLGDKQSAFSVHFEW 112
>LOXX_SOYBN (P24095) Seed lipoxygenase (EC 1.13.11.12)| Length = 864 Score = 45.4 bits (106), Expect = 7e-05 Identities = 32/109 (29%), Positives = 50/109 (45%), Gaps = 20/109 (18%) Frame = +3 Query: 186 KEGKIRGTAVLVKSDVLDLGDFHA----SLLDGVHKILGKD----------------DGV 305 K KI+GT VL+ +VLD + ++D ILG+ + Sbjct: 7 KGQKIKGTVVLMPKNVLDFNAITSIGKGGVIDTATGILGQGVSLVGGVIDTATSFLGRNI 66 Query: 306 SFRLVSATAPDPQNGSRGKMGKPAHLEEMVVTMKSTAAXESVFKVTFEW 452 S +L+SAT D GK+GK +LE+ + T+ + A + F + FEW Sbjct: 67 SMQLISATQTD--GSGNGKVGKEVYLEKHLPTLPTLGARQDAFSIFFEW 113
>LOX4_SOYBN (P38417) Lipoxygenase-4 (EC 1.13.11.12) (L-4) (VSP94)| Length = 853 Score = 43.5 bits (101), Expect = 2e-04 Identities = 32/102 (31%), Positives = 50/102 (49%), Gaps = 13/102 (12%) Frame = +3 Query: 186 KEGKIRGTAVLVKSDVLDLGD-------------FHASLLDGVHKILGKDDGVSFRLVSA 326 K KI+GT V+++ +VLD+ F S +D + K +S +L+SA Sbjct: 7 KGQKIKGTMVVMQKNVLDINSITSVGGIVDQGLGFIGSAVDALTFAATK---ISIQLISA 63 Query: 327 TAPDPQNGSRGKMGKPAHLEEMVVTMKSTAAXESVFKVTFEW 452 T D G +GK+GK +L +T+ + A E + V FEW Sbjct: 64 TKAD---GGKGKIGKSTNLRGK-ITLPTLGAGEQAYDVNFEW 101
>LOXA_PHAVU (P27480) Lipoxygenase 1 (EC 1.13.11.12)| Length = 862 Score = 40.0 bits (92), Expect = 0.003 Identities = 28/108 (25%), Positives = 49/108 (45%), Gaps = 22/108 (20%) Frame = +3 Query: 195 KIRGTAVLVKSDVLDLGDFHAS----------------------LLDGVHKILGKDDGVS 308 KI+GT VL+ +V D +F ++ ++DG I ++ ++ Sbjct: 10 KIKGTVVLMTKNVFDFNEFVSTTRGGIVGAAGGLFGAATDIVGGIVDGATAIFSRN--IA 67 Query: 309 FRLVSATAPDPQNGSRGKMGKPAHLEEMVVTMKSTAAXESVFKVTFEW 452 +L+SAT D GK+GK LE+ + ++ + + F V FEW Sbjct: 68 IQLISATKTDGLGN--GKVGKQTFLEKHLPSLPNLGDRQDAFNVYFEW 113
>ZN205_HUMAN (O95201) Zinc finger protein 205 (Zinc finger protein 210)| Length = 504 Score = 30.4 bits (67), Expect = 2.2 Identities = 15/47 (31%), Positives = 22/47 (46%), Gaps = 3/47 (6%) Frame = +3 Query: 12 HHCPPCAKCISKGTG--TH-RLCSSCSALPCLRCRTREQRRGEMLLH 143 H CP CAKC ++ + TH R + PC C +R ++ H Sbjct: 370 HKCPICAKCFTQSSALVTHQRTHTGVKPYPCPECGKCFSQRSNLIAH 416
>ZN449_HUMAN (Q6P9G9) Zinc finger protein 449 (Zinc finger and SCAN| domain-containing protein 19) Length = 518 Score = 30.0 bits (66), Expect = 2.8 Identities = 16/47 (34%), Positives = 20/47 (42%), Gaps = 3/47 (6%) Frame = +3 Query: 12 HHCPPCAKCI---SKGTGTHRLCSSCSALPCLRCRTREQRRGEMLLH 143 H CP C KC S+ TG R+ S C C R R ++ H Sbjct: 323 HRCPQCGKCFARKSQLTGHQRIHSGEEPHKCPECGKRFLRSSDLYRH 369
>IF2P_ARCFU (O29490) Probable translation initiation factor IF-2| Length = 595 Score = 29.6 bits (65), Expect = 3.7 Identities = 27/77 (35%), Positives = 35/77 (45%), Gaps = 7/77 (9%) Frame = +3 Query: 132 MLLHGLVDRLTGKNKEAWKEGKIRGTAVLVKSDVLDLG-DFHASLLDGVHK------ILG 290 ++L GL R KN EGK RGT + VK + LG A L DG K I G Sbjct: 215 LILVGLAQRYLEKNLRLHIEGKGRGTVLEVKEE-RGLGVTCDAILYDGTLKVGDRIAIAG 273 Query: 291 KDDGVSFRLVSATAPDP 341 KD+ + + + P P Sbjct: 274 KDEVIVTNVKAILKPPP 290
>DNAA_BIFLO (Q8G6K0) Chromosomal replication initiator protein dnaA| Length = 500 Score = 29.3 bits (64), Expect = 4.8 Identities = 20/73 (27%), Positives = 35/73 (47%), Gaps = 4/73 (5%) Frame = +3 Query: 189 EGKIRGTAVLV--KSDVLDL--GDFHASLLDGVHKILGKDDGVSFRLVSATAPDPQNGSR 356 EG T VL +D L GD + SLL + + G++ +F++V T P+P + ++ Sbjct: 43 EGVFGSTIVLCVDNNDTLQAIQGDLNDSLLQALRTVTGENMFPAFKVVPKTEPEPLSEAK 102 Query: 357 GKMGKPAHLEEMV 395 P+ + V Sbjct: 103 PAQPYPSEISPTV 115
>ZFP13_MOUSE (P10754) Zinc finger protein 13 (Zfp-13) (Krox-8 protein)| Length = 512 Score = 29.3 bits (64), Expect = 4.8 Identities = 14/47 (29%), Positives = 22/47 (46%), Gaps = 3/47 (6%) Frame = +3 Query: 12 HHCPPCAKCISKGTG--TH-RLCSSCSALPCLRCRTREQRRGEMLLH 143 H CP C+KC ++ + TH R + PC C +R ++ H Sbjct: 378 HKCPICSKCFTQSSALVTHQRTHTGVKPYPCPECGKCFSQRSNLIAH 424
>TRUA_GEOKA (Q5L3Q7) tRNA pseudouridine synthase A (EC 5.4.99.12) (tRNA-uridine| isomerase I) (tRNA pseudouridylate synthase I) Length = 258 Score = 29.3 bits (64), Expect = 4.8 Identities = 31/113 (27%), Positives = 41/113 (36%), Gaps = 2/113 (1%) Frame = +3 Query: 3 PYHHHCPPCAKCISKGTGTHRLCSSCSALPCLRCRTREQRRGEMLLHG--LVDRLTGKNK 176 PY H + + GTH S CSA + R R R E+ G L R G Sbjct: 134 PYSLHISAMNEALRLLHGTHDFTSFCSAKTSIEDRVRTMYRAEVKADGPMLEFRFVG--- 190 Query: 177 EAWKEGKIRGTAVLVKSDVLDLGDFHASLLDGVHKILGKDDGVSFRLVSATAP 335 G + ++ VL++G S D + KD RL TAP Sbjct: 191 ----SGFLYNMVRIIVGTVLEIGQGKRSPADISTLLAAKDR----RLAGPTAP 235
>ARI2_CAEEL (Q22431) Probable protein ariadne-2 (Ari-2)| Length = 482 Score = 28.5 bits (62), Expect = 8.2 Identities = 12/30 (40%), Positives = 14/30 (46%) Frame = +3 Query: 18 CPPCAKCISKGTGTHRLCSSCSALPCLRCR 107 CP C CI K G C+ + C RCR Sbjct: 287 CPQCHSCIEKAGG-------CNHIQCTRCR 309 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.312 0.126 0.378 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 44,475,675 Number of Sequences: 219361 Number of extensions: 821646 Number of successful extensions: 2964 Number of sequences better than 10.0: 25 Number of HSP's better than 10.0 without gapping: 2838 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2946 length of database: 80,573,946 effective HSP length: 102 effective length of database: 58,199,124 effective search space used: 2793557952 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.9 bits)