ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl08b11
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 117 3e-23
2gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 117 3e-23
3emb|AL731784.3|CNS08C88 Oryza sativa chromosome 12, . BAC OSJNBa... 117 3e-23
4dbj|AB011271.1| Oryza sativa (japonica cultivar-group) mRNA for ... 117 3e-23
5ref|NM_124727.2| Arabidopsis thaliana protein transporter AT5G53... 58 2e-05
6dbj|AK117217.1| Arabidopsis thaliana At5g53480 mRNA for putative... 58 2e-05
7dbj|AB015476.1| Arabidopsis thaliana genomic DNA, chromosome 5, ... 58 2e-05
8gb|AC165962.4| Mus musculus BAC clone RP23-362B7 from chromosome... 44 0.35
9gb|AC125544.4| Mus musculus BAC clone RP23-364A24 from chromosom... 44 0.35
10ref|XM_518320.1| PREDICTED: Pan troglodytes similar to HLA-F pro... 42 1.4
11gb|AC101651.6| Mus musculus chromosome 18, clone RP23-42D12, com... 42 1.4
12gb|AC165409.3| Mus musculus chromosome 18, clone RP23-90F15, com... 42 1.4
13gb|AC103933.7| Mus musculus chromosome 18, clone RP23-317G9, com... 42 1.4
14emb|AJ297913.2|PPI297913 Plasmid pIPO2T, complete sequence 42 1.4
15gb|AC103873.2| Homo sapiens chromosome 11, clone RP11-768H8, com... 42 1.4
16ref|XM_463624.1| Oryza sativa (japonica cultivar-group), predic... 40 5.5
17ref|XM_417924.1| PREDICTED: Gallus gallus similar to DLNB14 (LOC... 40 5.5
18gb|AC127588.3| Mus musculus BAC clone RP23-106G21 from chromosom... 40 5.5
19ref|XM_987811.1| PREDICTED: Mus musculus similar to MLCK protein... 40 5.5
20gb|AC079218.5| Mus musculus strain C57BL6/J chromosome 6 clone R... 40 5.5
21gb|AC019043.8| Homo sapiens BAC clone RP11-11B21 from 7, complet... 40 5.5
22gb|AC144402.2| Atelerix albiventris clone LBNL4-89B6, complete s... 40 5.5
23gb|AC126012.22| Medicago truncatula clone mth2-27p4, complete se... 40 5.5
24gb|AC141110.7| Medicago truncatula clone mth2-17i10, complete se... 40 5.5
25gb|CP000322.1| Nitrobacter hamburgensis X14 plasmid 3, complete ... 40 5.5
26gb|CP000320.1| Nitrobacter hamburgensis X14 plasmid 1, complete ... 40 5.5
27emb|AL031229.2|HS15D7 Human DNA sequence from clone RP1-15D7 on ... 40 5.5
28gb|BC065682.1| Danio rerio transducin (beta)-like 2, mRNA (cDNA ... 40 5.5
29gb|AC154642.2| Mus musculus BAC clone RP23-277C14 from chromosom... 40 5.5
30emb|BX005354.11| Zebrafish DNA sequence from clone DKEY-49L7, co... 40 5.5
31dbj|AK138010.1| Mus musculus 16 days neonate thymus cDNA, RIKEN ... 40 5.5
32ref|XM_679073.1| PREDICTED: Danio rerio similar to Transducin (b... 40 5.5
33gb|CP000264.1| Jannaschia sp. CCS1, complete genome 40 5.5
34emb|CR406372.1| Gallus gallus finished cDNA, clone ChEST321i17 40 5.5
35gb|AC158515.2| Mus musculus BAC clone RP24-487D11 from chromosom... 40 5.5
36dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.5
37emb|BX296527.6| Zebrafish DNA sequence from clone DKEYP-32C3 in ... 40 5.5
38ref|NM_212767.1| Danio rerio transducin (beta)-like 2 (tbl2), mRNA 40 5.5
39gb|AC106742.3| Homo sapiens chromosome 16 clone RP11-1136G4, com... 40 5.5
40dbj|AP003437.3| Oryza sativa (japonica cultivar-group) genomic D... 40 5.5
41dbj|AP006843.2| Oryza sativa (japonica cultivar-group) genomic D... 40 5.5
42gb|AC018475.32| Homo sapiens 12 BAC RP11-490G8 (Roswell Park Can... 40 5.5
43gb|AC084125.9| Homo sapiens chromosome 8, clone CTD-2517M22, com... 40 5.5
44emb|BX088525.4| Zebrafish DNA sequence from clone DKEYP-51F8 in ... 40 5.5
45dbj|AK103568.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 5.5
46emb|BX005176.8| Zebrafish DNA sequence from clone CH211-106N13 i... 40 5.5
47dbj|AK058979.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 5.5
48dbj|AP000647.5| Homo sapiens genomic DNA, chromosome 11 clone:CM... 40 5.5
49dbj|AP000619.5| Homo sapiens genomic DNA, chromosome 11 clone:CM... 40 5.5
50dbj|AP005241.4| Homo sapiens genomic DNA, chromosome 18 clone:RP... 40 5.5
51dbj|AP005130.4| Homo sapiens genomic DNA, chromosome 18 clone:RP... 40 5.5
52gb|AC154362.1| Mus musculus BAC clone RP23-154E1 from 14, comple... 40 5.5
53emb|CT010509.10| Mouse DNA sequence from clone RP23-63E8 on chro... 40 5.5 
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
                sequence
          Length = 27566993

 Score =  117 bits (59), Expect = 3e-23
 Identities = 107/123 (86%)
 Strand = Plus / Plus

                                                                            
Query: 287      tggatgttactcaaatacttttgagtgcgcaatctgccgatggctcaattaggaagcatg 346
                ||||| |||||||| | || |||||||| |||||| | |||||| | | |||||||| ||
Sbjct: 23437818 tggatattactcaagttctcttgagtgcacaatctcctgatggcgcgactaggaagcttg 23437877

                                                                            
Query: 347      ctgaagaaagcctcaagcagtttcaggagcaaaacctccctggtttcttgctctctctct 406
                ||||||||||||| |||||||| ||||||||||||||||| ||||||||| |||| ||||
Sbjct: 23437878 ctgaagaaagccttaagcagttccaggagcaaaacctcccaggtttcttgttctccctct 23437937

                   
Query: 407      caa 409
                |||
Sbjct: 23437938 caa 23437940
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>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score =  117 bits (59), Expect = 3e-23
 Identities = 107/123 (86%)
 Strand = Plus / Plus

                                                                            
Query: 287      tggatgttactcaaatacttttgagtgcgcaatctgccgatggctcaattaggaagcatg 346
                ||||| |||||||| | || |||||||| |||||| | |||||| | | |||||||| ||
Sbjct: 23366009 tggatattactcaagttctcttgagtgcacaatctcctgatggcgcgactaggaagcttg 23366068

                                                                            
Query: 347      ctgaagaaagcctcaagcagtttcaggagcaaaacctccctggtttcttgctctctctct 406
                ||||||||||||| |||||||| ||||||||||||||||| ||||||||| |||| ||||
Sbjct: 23366069 ctgaagaaagccttaagcagttccaggagcaaaacctcccaggtttcttgttctccctct 23366128

                   
Query: 407      caa 409
                |||
Sbjct: 23366129 caa 23366131
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>emb|AL731784.3|CNS08C88 Oryza sativa chromosome 12, . BAC OSJNBa0016C14 of library OSJNBa from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 162261

 Score =  117 bits (59), Expect = 3e-23
 Identities = 107/123 (86%)
 Strand = Plus / Minus

                                                                         
Query: 287   tggatgttactcaaatacttttgagtgcgcaatctgccgatggctcaattaggaagcatg 346
             ||||| |||||||| | || |||||||| |||||| | |||||| | | |||||||| ||
Sbjct: 64341 tggatattactcaagttctcttgagtgcacaatctcctgatggcgcgactaggaagcttg 64282

                                                                         
Query: 347   ctgaagaaagcctcaagcagtttcaggagcaaaacctccctggtttcttgctctctctct 406
             ||||||||||||| |||||||| ||||||||||||||||| ||||||||| |||| ||||
Sbjct: 64281 ctgaagaaagccttaagcagttccaggagcaaaacctcccaggtttcttgttctccctct 64222

                
Query: 407   caa 409
             |||
Sbjct: 64221 caa 64219
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>dbj|AB011271.1| Oryza sativa (japonica cultivar-group) mRNA for importin-beta2,
           partial cds
          Length = 3676

 Score =  117 bits (59), Expect = 3e-23
 Identities = 107/123 (86%)
 Strand = Plus / Plus

                                                                       
Query: 287 tggatgttactcaaatacttttgagtgcgcaatctgccgatggctcaattaggaagcatg 346
           ||||| |||||||| | || |||||||| |||||| | |||||| | | |||||||| ||
Sbjct: 103 tggatattactcaagttctcttgagtgcacaatctcctgatggcgcgactaggaagcttg 162

                                                                       
Query: 347 ctgaagaaagcctcaagcagtttcaggagcaaaacctccctggtttcttgctctctctct 406
           ||||||||||||| |||||||| ||||||||||||||||| ||||||||| |||| ||||
Sbjct: 163 ctgaagaaagccttaagcagttccaggagcaaaacctcccaggtttcttgttctccctct 222

              
Query: 407 caa 409
           |||
Sbjct: 223 caa 225
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>ref|NM_124727.2| Arabidopsis thaliana protein transporter AT5G53480 mRNA, complete
           cds
          Length = 3811

 Score = 58.0 bits (29), Expect = 2e-05
 Identities = 50/57 (87%)
 Strand = Plus / Plus

                                                                    
Query: 340 aagcatgctgaagaaagcctcaagcagtttcaggagcaaaacctccctggtttcttg 396
           ||||| || |||||||| || |||||||||||||||||||||||  | |||||||||
Sbjct: 186 aagcacgcggaagaaagtcttaagcagtttcaggagcaaaaccttgcgggtttcttg 242
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>dbj|AK117217.1| Arabidopsis thaliana At5g53480 mRNA for putative importin beta,
           complete cds, clone: RAFL16-76-N11
          Length = 3810

 Score = 58.0 bits (29), Expect = 2e-05
 Identities = 50/57 (87%)
 Strand = Plus / Plus

                                                                    
Query: 340 aagcatgctgaagaaagcctcaagcagtttcaggagcaaaacctccctggtttcttg 396
           ||||| || |||||||| || |||||||||||||||||||||||  | |||||||||
Sbjct: 186 aagcacgcggaagaaagtcttaagcagtttcaggagcaaaaccttgcgggtttcttg 242
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>dbj|AB015476.1| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MNC6
          Length = 82952

 Score = 58.0 bits (29), Expect = 2e-05
 Identities = 50/57 (87%)
 Strand = Plus / Plus

                                                                    
Query: 340 aagcatgctgaagaaagcctcaagcagtttcaggagcaaaacctccctggtttcttg 396
           ||||| || |||||||| || |||||||||||||||||||||||  | |||||||||
Sbjct: 309 aagcacgcggaagaaagtcttaagcagtttcaggagcaaaaccttgcgggtttcttg 365
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>gb|AC165962.4| Mus musculus BAC clone RP23-362B7 from chromosome 17, complete sequence
          Length = 179745

 Score = 44.1 bits (22), Expect = 0.35
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 20    cccttttccttttctttccccc 41
             ||||||||||||||||||||||
Sbjct: 58092 cccttttccttttctttccccc 58071
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>gb|AC125544.4| Mus musculus BAC clone RP23-364A24 from chromosome 17, complete
             sequence
          Length = 159298

 Score = 44.1 bits (22), Expect = 0.35
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 20    cccttttccttttctttccccc 41
             ||||||||||||||||||||||
Sbjct: 67153 cccttttccttttctttccccc 67174
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>ref|XM_518320.1| PREDICTED: Pan troglodytes similar to HLA-F protein (LOC462529),
           mRNA
          Length = 2346

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 12  caaagatacccttttccttttcttt 36
           |||||||| ||||||||||||||||
Sbjct: 295 caaagatatccttttccttttcttt 271
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>gb|AC101651.6| Mus musculus chromosome 18, clone RP23-42D12, complete sequence
          Length = 198070

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 387    tggtttcttgctctctctctc 407
              |||||||||||||||||||||
Sbjct: 163083 tggtttcttgctctctctctc 163063
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>gb|AC165409.3| Mus musculus chromosome 18, clone RP23-90F15, complete sequence
          Length = 198735

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 387    tggtttcttgctctctctctc 407
              |||||||||||||||||||||
Sbjct: 190674 tggtttcttgctctctctctc 190694
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>gb|AC103933.7| Mus musculus chromosome 18, clone RP23-317G9, complete sequence
          Length = 198626

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 387    tggtttcttgctctctctctc 407
              |||||||||||||||||||||
Sbjct: 153685 tggtttcttgctctctctctc 153705
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>emb|AJ297913.2|PPI297913 Plasmid pIPO2T, complete sequence
          Length = 45319

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 206   cccgcgccggccagctccacc 226
             |||||||||||||||||||||
Sbjct: 32440 cccgcgccggccagctccacc 32420
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>gb|AC103873.2| Homo sapiens chromosome 11, clone RP11-768H8, complete sequence
          Length = 184860

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 383   tccctggtttcttgctctctctctc 407
             |||||| ||||||||||||||||||
Sbjct: 81697 tccctgctttcttgctctctctctc 81721
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>ref|XM_463624.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1191

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 223 caccccgcccctcgccgccg 242
           ||||||||||||||||||||
Sbjct: 36  caccccgcccctcgccgccg 55
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>ref|XM_417924.1| PREDICTED: Gallus gallus similar to DLNB14 (LOC419787), mRNA
          Length = 2744

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 370  caggagcaaaacctccctgg 389
            ||||||||||||||||||||
Sbjct: 2066 caggagcaaaacctccctgg 2085
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>gb|AC127588.3| Mus musculus BAC clone RP23-106G21 from chromosome 18, complete sequence
          Length = 180320

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 374    agcaaaacctccctggtttc 393
              ||||||||||||||||||||
Sbjct: 132863 agcaaaacctccctggtttc 132844
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>ref|XM_987811.1| PREDICTED: Mus musculus similar to MLCK protein (LOC676159), mRNA
          Length = 3134

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 21   ccttttccttttctttcccc 40
            ||||||||||||||||||||
Sbjct: 1705 ccttttccttttctttcccc 1686
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>gb|AC079218.5| Mus musculus strain C57BL6/J chromosome 6 clone RP23-382G13, complete
             sequence
          Length = 142667

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 22    cttttccttttctttccccc 41
             ||||||||||||||||||||
Sbjct: 58602 cttttccttttctttccccc 58583
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>gb|AC019043.8| Homo sapiens BAC clone RP11-11B21 from 7, complete sequence
          Length = 211680

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 222   ccaccccgcccctcgccgcc 241
             ||||||||||||||||||||
Sbjct: 10700 ccaccccgcccctcgccgcc 10681
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>gb|AC144402.2| Atelerix albiventris clone LBNL4-89B6, complete sequence
          Length = 161430

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 22    cttttccttttctttccccc 41
             ||||||||||||||||||||
Sbjct: 73597 cttttccttttctttccccc 73616
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>gb|AC126012.22| Medicago truncatula clone mth2-27p4, complete sequence
          Length = 108900

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 35    ttcccccacattatttggtt 54
             ||||||||||||||||||||
Sbjct: 36046 ttcccccacattatttggtt 36065
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>gb|AC141110.7| Medicago truncatula clone mth2-17i10, complete sequence
          Length = 113345

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 35    ttcccccacattatttggtt 54
             ||||||||||||||||||||
Sbjct: 91268 ttcccccacattatttggtt 91287
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>gb|CP000322.1| Nitrobacter hamburgensis X14 plasmid 3, complete sequence
          Length = 121408

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 354   aagcctcaagcagtttcaggagca 377
             ||||||||||||| ||||||||||
Sbjct: 99548 aagcctcaagcagcttcaggagca 99571



 Score = 40.1 bits (20), Expect = 5.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 354   aagcctcaagcagtttcaggagca 377
             ||||||||||||| ||||||||||
Sbjct: 90152 aagcctcaagcagcttcaggagca 90175



 Score = 40.1 bits (20), Expect = 5.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 354   aagcctcaagcagtttcaggagca 377
             ||||||||||||| ||||||||||
Sbjct: 52885 aagcctcaagcagcttcaggagca 52908
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>gb|CP000320.1| Nitrobacter hamburgensis X14 plasmid 1, complete sequence
          Length = 294829

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 354    aagcctcaagcagtttcaggagca 377
              ||||||||||||| ||||||||||
Sbjct: 192812 aagcctcaagcagcttcaggagca 192835



 Score = 40.1 bits (20), Expect = 5.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 354    aagcctcaagcagtttcaggagca 377
              ||||||||||||| ||||||||||
Sbjct: 181239 aagcctcaagcagcttcaggagca 181262
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>emb|AL031229.2|HS15D7 Human DNA sequence from clone RP1-15D7 on chromosome 6p22.1-22.3
             Contains a 60S ribosomal protein L8 (RPL8) pseudogene,
             ESTs, STSs, GSS and two CpG islands, complete sequence
          Length = 61450

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 351   agaaagcctcaagcagtttc 370
             ||||||||||||||||||||
Sbjct: 48756 agaaagcctcaagcagtttc 48737
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>gb|BC065682.1| Danio rerio transducin (beta)-like 2, mRNA (cDNA clone MGC:77216
            IMAGE:6962668), complete cds
          Length = 1739

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 343  catgctgaagaaagcctcaa 362
            ||||||||||||||||||||
Sbjct: 1530 catgctgaagaaagcctcaa 1549
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>gb|AC154642.2| Mus musculus BAC clone RP23-277C14 from chromosome 14, complete sequence
          Length = 211315

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 39     cccacattatttggtttcct 58
              ||||||||||||||||||||
Sbjct: 170938 cccacattatttggtttcct 170957
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>emb|BX005354.11| Zebrafish DNA sequence from clone DKEY-49L7, complete sequence
          Length = 149165

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 16    gatacccttttccttttctt 35
             ||||||||||||||||||||
Sbjct: 69190 gatacccttttccttttctt 69209
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>dbj|AK138010.1| Mus musculus 16 days neonate thymus cDNA, RIKEN full-length enriched
            library, clone:A130067M02 product:unclassifiable, full
            insert sequence
          Length = 5110

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 389  gtttcttgctctctctctca 408
            ||||||||||||||||||||
Sbjct: 4824 gtttcttgctctctctctca 4805
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>ref|XM_679073.1| PREDICTED: Danio rerio similar to Transducin (beta)-like 2
            (LOC556305), mRNA
          Length = 1475

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 343  catgctgaagaaagcctcaa 362
            ||||||||||||||||||||
Sbjct: 1299 catgctgaagaaagcctcaa 1318
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>gb|CP000264.1| Jannaschia sp. CCS1, complete genome
          Length = 4317977

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 307     ttgagtgcgcaatctgccgatggc 330
               ||||||||||||| ||||||||||
Sbjct: 3975664 ttgagtgcgcaatatgccgatggc 3975687
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>emb|CR406372.1| Gallus gallus finished cDNA, clone ChEST321i17
          Length = 1390

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 370 caggagcaaaacctccctgg 389
           ||||||||||||||||||||
Sbjct: 712 caggagcaaaacctccctgg 731
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>gb|AC158515.2| Mus musculus BAC clone RP24-487D11 from chromosome 9, complete sequence
          Length = 176590

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 389    gtttcttgctctctctctca 408
              ||||||||||||||||||||
Sbjct: 123509 gtttcttgctctctctctca 123528
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 223      caccccgcccctcgccgccg 242
                ||||||||||||||||||||
Sbjct: 40143925 caccccgcccctcgccgccg 40143906
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>emb|BX296527.6| Zebrafish DNA sequence from clone DKEYP-32C3 in linkage group 2, complete
              sequence
          Length = 185706

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 16     gatacccttttccttttctt 35
              ||||||||||||||||||||
Sbjct: 179219 gatacccttttccttttctt 179238
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>ref|NM_212767.1| Danio rerio transducin (beta)-like 2 (tbl2), mRNA
          Length = 1739

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 343  catgctgaagaaagcctcaa 362
            ||||||||||||||||||||
Sbjct: 1530 catgctgaagaaagcctcaa 1549
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>gb|AC106742.3| Homo sapiens chromosome 16 clone RP11-1136G4, complete sequence
          Length = 145009

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 389   gtttcttgctctctctctca 408
             ||||||||||||||||||||
Sbjct: 35870 gtttcttgctctctctctca 35889
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>dbj|AP003437.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0678F11
          Length = 154292

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 223   caccccgcccctcgccgccg 242
             ||||||||||||||||||||
Sbjct: 87009 caccccgcccctcgccgccg 86990
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>dbj|AP006843.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
            clone:B1793G04
          Length = 156714

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 223  caccccgcccctcgccgccg 242
            ||||||||||||||||||||
Sbjct: 9703 caccccgcccctcgccgccg 9684
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>gb|AC018475.32| Homo sapiens 12 BAC RP11-490G8 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 152757

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 390   tttcttgctctctctctcaa 409
             ||||||||||||||||||||
Sbjct: 54816 tttcttgctctctctctcaa 54835
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>gb|AC084125.9| Homo sapiens chromosome 8, clone CTD-2517M22, complete sequence
          Length = 197294

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 225    ccccgcccctcgccgccgac 244
              ||||||||||||||||||||
Sbjct: 184293 ccccgcccctcgccgccgac 184274



 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 225    ccccgcccctcgccgccgac 244
              ||||||||||||||||||||
Sbjct: 184266 ccccgcccctcgccgccgac 184247



 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 225    ccccgcccctcgccgccgac 244
              ||||||||||||||||||||
Sbjct: 184239 ccccgcccctcgccgccgac 184220



 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 225    ccccgcccctcgccgccgac 244
              ||||||||||||||||||||
Sbjct: 184212 ccccgcccctcgccgccgac 184193
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>emb|BX088525.4| Zebrafish DNA sequence from clone DKEYP-51F8 in linkage group 10,
              complete sequence
          Length = 212133

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 343    catgctgaagaaagcctcaa 362
              ||||||||||||||||||||
Sbjct: 206142 catgctgaagaaagcctcaa 206161
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>dbj|AK103568.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033132M08, full
           insert sequence
          Length = 1627

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 223 caccccgcccctcgccgccg 242
           ||||||||||||||||||||
Sbjct: 144 caccccgcccctcgccgccg 163
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>emb|BX005176.8| Zebrafish DNA sequence from clone CH211-106N13 in linkage group 2,
            complete sequence
          Length = 171996

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 16   gatacccttttccttttctt 35
            ||||||||||||||||||||
Sbjct: 5138 gatacccttttccttttctt 5157
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>dbj|AK058979.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-020-D09, full
           insert sequence
          Length = 1607

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 223 caccccgcccctcgccgccg 242
           ||||||||||||||||||||
Sbjct: 135 caccccgcccctcgccgccg 154
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>dbj|AP000647.5| Homo sapiens genomic DNA, chromosome 11 clone:CMB9-75I23, complete
             sequence
          Length = 118818

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 384   ccctggtttcttgctctctctctc 407
             |||||||||||| |||||||||||
Sbjct: 62057 ccctggtttctttctctctctctc 62034
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>dbj|AP000619.5| Homo sapiens genomic DNA, chromosome 11 clone:CMB9-42C6, complete
             sequence
          Length = 103181

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 384   ccctggtttcttgctctctctctc 407
             |||||||||||| |||||||||||
Sbjct: 12835 ccctggtttctttctctctctctc 12812
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>dbj|AP005241.4| Homo sapiens genomic DNA, chromosome 18 clone:RP11-502P1, complete
              sequence
          Length = 183466

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 21     ccttttccttttctttcccc 40
              ||||||||||||||||||||
Sbjct: 120015 ccttttccttttctttcccc 119996
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>dbj|AP005130.4| Homo sapiens genomic DNA, chromosome 18 clone:RP11-168H23, complete
            sequence
          Length = 181276

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 21   ccttttccttttctttcccc 40
            ||||||||||||||||||||
Sbjct: 4286 ccttttccttttctttcccc 4267
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>gb|AC154362.1| Mus musculus BAC clone RP23-154E1 from 14, complete sequence
          Length = 205650

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 39     cccacattatttggtttcct 58
              ||||||||||||||||||||
Sbjct: 193482 cccacattatttggtttcct 193463
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>emb|CT010509.10| Mouse DNA sequence from clone RP23-63E8 on chromosome 9, complete
             sequence
          Length = 258170

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 389   gtttcttgctctctctctca 408
             ||||||||||||||||||||
Sbjct: 11895 gtttcttgctctctctctca 11876


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7,738,641
Number of Sequences: 3902068
Number of extensions: 7738641
Number of successful extensions: 115185
Number of sequences better than 10.0: 53
Number of HSP's better than 10.0 without gapping: 53
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 114950
Number of HSP's gapped (non-prelim): 235
length of query: 412
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 390
effective length of database: 17,147,199,772
effective search space: 6687407911080
effective search space used: 6687407911080
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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