Clone Information

BLAST Search Result

Clone Name	bastl08b10
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	SRP2_SCHPO (P78814) Pre-mRNA-splicing factor srp2	40	0.001
2	FLRT2_HUMAN (O43155) Leucine-rich repeat transmembrane protein F...	36	0.026
3	TNR6A_HUMAN (Q8NDV7) Trinucleotide repeat-containing gene 6A pro...	32	0.28
4	ERG24_NEUCR (P38670) Delta(14)-sterol reductase (EC 1.3.1.70) (C...	32	0.48
5	MLL3_HUMAN (Q8NEZ4) Myeloid/lymphoid or mixed-lineage leukemia p...	31	0.63
6	SAFB2_HUMAN (Q14151) Scaffold attachment factor B2	30	1.1
7	NUOG_MYCTU (P95175) NADH-quinone oxidoreductase chain G (EC 1.6....	30	1.1
8	NUOG_MYCBO (P59962) NADH-quinone oxidoreductase chain G (EC 1.6....	30	1.1
9	BGAL_SULSO (P22498) Beta-galactosidase (EC 3.2.1.23) (Lactase)	30	1.4
10	CHD2_HUMAN (O14647) Chromodomain-helicase-DNA-binding protein 2 ...	30	1.8
11	IF4B_HUMAN (P23588) Eukaryotic translation initiation factor 4B ...	30	1.8
12	BGAL_SULSH (P50388) Beta-galactosidase (EC 3.2.1.23) (Lactase)	30	1.8
13	IF4B_MOUSE (Q8BGD9) Eukaryotic translation initiation factor 4B ...	29	2.4
14	ZEA8_MAIZE (P06676) Zein-alpha precursor (19 kDa) (Clone 19C1)	29	2.4
15	ZEA7_MAIZE (P04703) Zein-alpha precursor (19 kDa) (Clone A20)	29	2.4
16	LMBR1_XENTR (Q5U4X7) Limb region 1 protein homolog	28	4.1
17	HXC4_MOUSE (Q08624) Homeobox protein Hox-C4 (Hox-3.5)	28	4.1
18	HXC4_HUMAN (P09017) Homeobox protein Hox-C4 (Hox-3E) (CP19)	28	4.1
19	EP300_HUMAN (Q09472) E1A-associated protein p300 (EC 2.3.1.48)	28	4.1
20	SESN1_MOUSE (P58006) Sestrin-1 (p53-regulated protein PA26)	28	4.1
21	SESN1_MACFA (Q4R6P7) Sestrin-1	28	4.1
22	SESN1_HUMAN (Q9Y6P5) Sestrin-1 (p53-regulated protein PA26)	28	4.1
23	PALI_MAGGR (Q51MB1) pH-response regulator protein palI/RIM9	28	4.1
24	ZEA9_MAIZE (P06677) Zein-alpha precursor (19 kDa) (Clone 19C2)	28	4.1
25	ZEA6_MAIZE (P04702) Zein-alpha precursor (19 kDa) (Clone M6)	28	4.1
26	LMBR1_CHICK (Q7ZUA6) Limb region 1 protein homolog	28	5.4
27	MOG5_CAEEL (Q09530) Probable pre-mRNA-splicing factor ATP-depend...	28	5.4
28	NU4M_ANOGA (P34852) NADH-ubiquinone oxidoreductase chain 4 (EC 1...	28	5.4
29	NU4M_ANOQU (P33511) NADH-ubiquinone oxidoreductase chain 4 (EC 1...	28	5.4
30	LMBR1_MOUSE (Q9JIT0) Limb region 1 protein	28	5.4
31	GPDA_BACSK (Q5WGU2) Glycerol-3-phosphate dehydrogenase [NAD(P)+]...	28	5.4
32	CNN3_HUMAN (Q15417) Calponin-3 (Calponin, acidic isoform)	28	5.4
33	ABRB_ECOLI (P75747) Protein abrB (AidB regulator)	28	7.0
34	FMRA_CALPA (Q01133) Antho-RFamide neuropeptides precursor [Conta...	28	7.0
35	SEC1_MOUSE (P97353) Galactoside 2-alpha-L-fucosyltransferase 3 (...	28	7.0
36	PALI_NEUCR (Q7SFN5) pH-response regulator protein palI/rim-9	28	7.0
37	CAD96_DROME (Q9VBW3) Tyrosine kinase receptor Cad96Ca precursor ...	28	7.0
38	YP68_CAEEL (Q09217) Hypothetical protein B0495.8	28	7.0
39	DBP7_GIBZE (Q4HZ68) ATP-dependent RNA helicase DBP7 (EC 3.6.1.-)	28	7.0
40	BSN_RAT (O88778) Bassoon protein	28	7.0
41	SYD_SYNP7 (Q31NM6) Aspartyl-tRNA synthetase (EC 6.1.1.12) (Aspar...	27	9.1
42	SYD_SYNP6 (Q5N5I8) Aspartyl-tRNA synthetase (EC 6.1.1.12) (Aspar...	27	9.1
43	YLPM1_MOUSE (Q9R0I7) YLP motif-containing protein 1 (Nuclear pro...	27	9.1
44	DMP1_RAT (P98193) Dentin matrix acidic phosphoprotein 1 precurso...	27	9.1
45	CSPG2_BOVIN (P81282) Versican core protein precursor (Large fibr...	27	9.1

>SRP2_SCHPO (P78814) Pre-mRNA-splicing factor srp2|
          Length = 365

 Score = 40.0 bits (92), Expect = 0.001
 Identities = 39/121 (32%), Positives = 48/121 (39%), Gaps = 12/121 (9%)
 Frame = +1

Query: 55  AINEP------EFRAGEPYIGRRYVDEGFPSD--RRGAFGPDIHDRNMYPPPPTAGTMWS 210
           A NEP       FR+  P   RRY D+       RR A+ P   D   Y P         
Sbjct: 172 AANEPLPEVPSRFRSRSPPARRRYRDDYRRGGDYRRDAYRPGRDDERRYAPR-------G 224

Query: 211 QPRRNFDEEFAT--TKDYRRNKRIGSR--DRGEFGAEFEDRYQGGEDNYERDHQYGRYSC 378
           + RRN  +E+      +YRRN R   R     E+     D Y+ G D Y R    GR S 
Sbjct: 225 EYRRNNRDEYRRGGRDEYRRNSRSDYRRPHDDEYRRPRGDEYRPGRDEYRRSRDDGRPSH 284

Query: 379 D 381
           D
Sbjct: 285 D 285

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>FLRT2_HUMAN (O43155) Leucine-rich repeat transmembrane protein FLRT2 precursor|
           (Fibronectin-like domain-containing leucine-rich
           transmembrane protein 2)
          Length = 660

 Score = 35.8 bits (81), Expect = 0.026
 Identities = 18/46 (39%), Positives = 30/46 (65%), Gaps = 1/46 (2%)
 Frame = +2

Query: 131 IEGVHLVQIYMIEICIHHHPLLAPCGL-SLEEILMKNSQLRKITEG 265
           + G HL+++Y+ +  I+H PL A   L  LE + + N+QLR +T+G
Sbjct: 249 LPGTHLIRLYLQDNQINHIPLTAFSNLRKLERLDISNNQLRMLTQG 294

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>TNR6A_HUMAN (Q8NDV7) Trinucleotide repeat-containing gene 6A protein (CAG repeat|
            protein 26) (Glycin-tryptophan protein of 182 kDa) (GW182
            autoantigen) (GW1 protein) (EMSY interactor protein)
          Length = 1962

 Score = 32.3 bits (72), Expect = 0.28
 Identities = 14/33 (42%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
 Frame = +1

Query: 19   GWENNSAPDGYGAIN-EPEFRAGEPYIGRRYVD 114
            GW    +P+G  ++N  PEFR GEP+ G   +D
Sbjct: 1593 GWPRAKSPNGSSSVNWPPEFRPGEPWKGYPNID 1625

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>ERG24_NEUCR (P38670) Delta(14)-sterol reductase (EC 1.3.1.70) (C-14 sterol|
           reductase) (Sterol C14-reductase)
          Length = 490

 Score = 31.6 bits (70), Expect = 0.48
 Identities = 26/76 (34%), Positives = 38/76 (50%), Gaps = 2/76 (2%)
 Frame = -1

Query: 357 MISLIVVLSALVAIFKLSTKLPTISASNPFVPSVIFRSCEFFIKISSRLRPHGASSGWWW 178
           +I++  VL+A  +IF+LS        +NP  PSV   +     K  SRL     +SGWW 
Sbjct: 330 LIAVGAVLAAGYSIFRLSNSQKNNFRTNPEDPSVKHLT-YLQTKTGSRL----ITSGWWG 384

Query: 177 I--HISIMYIWTKCTP 136
           I  HI+ +  W +  P
Sbjct: 385 IARHINYLGDWLQSWP 400

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>MLL3_HUMAN (Q8NEZ4) Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog|
            (Histone-lysine N-methyltransferase, H3 lysine-4 specific
            MLL3) (EC 2.1.1.43) (Homologous to ALR protein)
          Length = 4911

 Score = 31.2 bits (69), Expect = 0.63
 Identities = 20/51 (39%), Positives = 25/51 (49%), Gaps = 7/51 (13%)
 Frame = +1

Query: 88   PYIGRRYVDEGFPSDRRGAFGPDIHDRNMYP-------PPPTAGTMWSQPR 219
            P +G RY    FP D+RG + PD+    M P       P  + GTM SQ R
Sbjct: 2449 PPLGPRYAV--FPKDQRGPYPPDVASMGMRPHGFRFGFPGGSHGTMPSQER 2497

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>SAFB2_HUMAN (Q14151) Scaffold attachment factor B2|
          Length = 953

 Score = 30.4 bits (67), Expect = 1.1
 Identities = 27/98 (27%), Positives = 38/98 (38%), Gaps = 9/98 (9%)
 Frame = +1

Query: 70   EFRAGEPYIGRRYVDEGFPS-------DRRGAFGPD--IHDRNMYPPPPTAGTMWSQPRR 222
            + R G+ Y   R+   G P        D  G +G D  + +    PPPP  G  W +  +
Sbjct: 793  DHRDGQHYGDDRHGHGGPPERHGRDSRDGWGGYGSDKRLSEGRGLPPPPRGGRDWGEHNQ 852

Query: 223  NFDEEFATTKDYRRNKRIGSRDRGEFGAEFEDRYQGGE 336
              +E  A           G+ D G    E   R+QGGE
Sbjct: 853  RLEEHQARAWQ-------GAMDAGAASRE-HARWQGGE 882

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>NUOG_MYCTU (P95175) NADH-quinone oxidoreductase chain G (EC 1.6.99.5) (NADH|
           dehydrogenase I, chain G) (NDH-1, chain G)
          Length = 806

 Score = 30.4 bits (67), Expect = 1.1
 Identities = 22/81 (27%), Positives = 36/81 (44%)
 Frame = +2

Query: 116 KAFLVIEGVHLVQIYMIEICIHHHPLLAPCGLSLEEILMKNSQLRKITEGTKGLEAEIVG 295
           K  LVI    L+ I +   C   HPLL P G   + ++    Q + +   T     ++V 
Sbjct: 30  KGTLVIRAAELMGIQIPRFC--DHPLLEPVGACRQCLVEVEGQRKPLASCTTVATDDMVV 87

Query: 296 SLVLSLKIATKAERTTMREII 358
              L+ +IA KA+   M  ++
Sbjct: 88  RTQLTSEIADKAQHGVMELLL 108

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>NUOG_MYCBO (P59962) NADH-quinone oxidoreductase chain G (EC 1.6.99.5) (NADH|
           dehydrogenase I, chain G) (NDH-1, chain G)
          Length = 806

 Score = 30.4 bits (67), Expect = 1.1
 Identities = 22/81 (27%), Positives = 36/81 (44%)
 Frame = +2

Query: 116 KAFLVIEGVHLVQIYMIEICIHHHPLLAPCGLSLEEILMKNSQLRKITEGTKGLEAEIVG 295
           K  LVI    L+ I +   C   HPLL P G   + ++    Q + +   T     ++V 
Sbjct: 30  KGTLVIRAAELMGIQIPRFC--DHPLLEPVGACRQCLVEVEGQRKPLASCTTVATDDMVV 87

Query: 296 SLVLSLKIATKAERTTMREII 358
              L+ +IA KA+   M  ++
Sbjct: 88  RTQLTSEIADKAQHGVMELLL 108

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>BGAL_SULSO (P22498) Beta-galactosidase (EC 3.2.1.23) (Lactase)|
          Length = 489

 Score = 30.0 bits (66), Expect = 1.4
 Identities = 18/59 (30%), Positives = 27/59 (45%)
 Frame = +1

Query: 1   RYAPHHGWENNSAPDGYGAINEPEFRAGEPYIGRRYVDEGFPSDRRGAFGPDIHDRNMY 177
           R++ +  W+ +   D Y  +NEP    G  Y+G   V  GFP    G    ++  R MY
Sbjct: 185 RFSAYIAWKFDDLVDEYSTMNEPNVVGGLGYVG---VKSGFPP---GYLSFELSRRAMY 237

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>CHD2_HUMAN (O14647) Chromodomain-helicase-DNA-binding protein 2 (EC 3.6.1.-)|
            (ATP-dependent helicase CHD2) (CHD-2)
          Length = 1739

 Score = 29.6 bits (65), Expect = 1.8
 Identities = 21/78 (26%), Positives = 35/78 (44%), Gaps = 5/78 (6%)
 Frame = +1

Query: 154  DIHDRNMYPPPPTAGTMWSQPRRNFDEEFATTKDYRRNKR-IGSRDRGEFGAEFEDRYQG 330
            ++H +  + P      M   PR N++           NKR   + DRG++  E +  Y G
Sbjct: 1600 NLHPQKPHLPASHGPQMHGHPRDNYNHP---------NKRHFSNADRGDWQRERKFNYGG 1650

Query: 331  GEDN----YERDHQYGRY 372
            G +N     +R HQY ++
Sbjct: 1651 GNNNPPWGSDRHHQYEQH 1668

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>IF4B_HUMAN (P23588) Eukaryotic translation initiation factor 4B (eIF-4B)|
          Length = 611

 Score = 29.6 bits (65), Expect = 1.8
 Identities = 32/112 (28%), Positives = 48/112 (42%), Gaps = 3/112 (2%)
 Frame = +1

Query: 22  WENNSAPDGYGAINEPEFRAGEPYIGRRYVDEGFPSDR-RGAFGPDIHDRNMYPPPPTAG 198
           W    A D +   ++   R G+   G +Y D  + SDR R  +      R+ Y   P   
Sbjct: 199 WRARPATDSF---DDYPPRRGDDSFGDKYRDR-YDSDRYRDGY------RDGYRDGPRRD 248

Query: 199 TMWSQPRRNFDEEFATTKDYRRNKRIGSRDRGEFGAEF--EDRYQGGEDNYE 348
                 R  +D+  +   D   + RIGS  R  FG+ +  +D Y+GG D YE
Sbjct: 249 MDRYGGRDRYDDRGSRDYDRGYDSRIGSGRRA-FGSGYRRDDDYRGGGDRYE 299

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>BGAL_SULSH (P50388) Beta-galactosidase (EC 3.2.1.23) (Lactase)|
          Length = 489

 Score = 29.6 bits (65), Expect = 1.8
 Identities = 14/42 (33%), Positives = 21/42 (50%)
 Frame = +1

Query: 1   RYAPHHGWENNSAPDGYGAINEPEFRAGEPYIGRRYVDEGFP 126
           R++ +  W+ +   D Y  +NEP    G  Y+G   V  GFP
Sbjct: 185 RFSAYIAWKFDDLVDEYSTMNEPNVVGGLGYVG---VKSGFP 223

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>IF4B_MOUSE (Q8BGD9) Eukaryotic translation initiation factor 4B (eIF-4B)|
          Length = 611

 Score = 29.3 bits (64), Expect = 2.4
 Identities = 29/94 (30%), Positives = 42/94 (44%), Gaps = 3/94 (3%)
 Frame = +1

Query: 76  RAGEPYIGRRYVDEGFPSDR-RGAFGPDIHDRNMYPPPPTAGTMWSQPRRNFDEEFATTK 252
           R G+   G +Y D  + SDR R  +      R+ Y   P         R  +D+  +   
Sbjct: 214 RRGDDSFGDKYRDR-YDSDRYRDGY------RDGYRDGPRRDMDRYGGRDRYDDRGSRDY 266

Query: 253 DYRRNKRIGSRDRGEFGAEF--EDRYQGGEDNYE 348
           D   + RIGS  R  FG+ +  +D Y+GG D YE
Sbjct: 267 DRGYDSRIGSGRRA-FGSGYRRDDDYRGGGDRYE 299

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>ZEA8_MAIZE (P06676) Zein-alpha precursor (19 kDa) (Clone 19C1)|
          Length = 240

 Score = 29.3 bits (64), Expect = 2.4
 Identities = 17/47 (36%), Positives = 26/47 (55%), Gaps = 3/47 (6%)
 Frame = -1

Query: 369 TPILMISLIVVLSALVA---IFKLSTKLPTISASNPFVPSVIFRSCE 238
           T I  + +++ LSA VA   IF   ++ P  S   P++PS+I   CE
Sbjct: 3   TKIFSLLMLLALSACVANATIFPQCSQAPIASLLPPYLPSMIASVCE 49

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>ZEA7_MAIZE (P04703) Zein-alpha precursor (19 kDa) (Clone A20)|
          Length = 240

 Score = 29.3 bits (64), Expect = 2.4
 Identities = 17/47 (36%), Positives = 26/47 (55%), Gaps = 3/47 (6%)
 Frame = -1

Query: 369 TPILMISLIVVLSALVA---IFKLSTKLPTISASNPFVPSVIFRSCE 238
           T I  + +++ LSA VA   IF   ++ P  S   P++PS+I   CE
Sbjct: 3   TKIFSLLMLLALSACVANATIFPQCSQAPIASLLPPYLPSMIASVCE 49

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>LMBR1_XENTR (Q5U4X7) Limb region 1 protein homolog|
          Length = 485

 Score = 28.5 bits (62), Expect = 4.1
 Identities = 14/50 (28%), Positives = 25/50 (50%), Gaps = 4/50 (8%)
 Frame = +2

Query: 41  LMGMAPLMSQNLGLVNPTLVGDM----WMKAFLVIEGVHLVQIYMIEICI 178
           L    P+MS+ LG+    L+GD     W+  F ++   +L+   M  +C+
Sbjct: 396 LSSALPVMSRTLGITRFDLLGDFGRFNWLGNFYIVVAYNLMFAVMTTLCL 445

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>HXC4_MOUSE (Q08624) Homeobox protein Hox-C4 (Hox-3.5)|
          Length = 264

 Score = 28.5 bits (62), Expect = 4.1
 Identities = 15/44 (34%), Positives = 20/44 (45%), Gaps = 2/44 (4%)
 Frame = +1

Query: 64  EPEFRAGEPYIGRRYVDEGFPS--DRRGAFGPDIHDRNMYPPPP 189
           +P+F   E Y    Y+ E  P    R    G   H + +YPPPP
Sbjct: 14  DPKFPPCEEYSQNSYIPEHSPEYYGRTRESGFQHHHQELYPPPP 57

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>HXC4_HUMAN (P09017) Homeobox protein Hox-C4 (Hox-3E) (CP19)|
          Length = 264

 Score = 28.5 bits (62), Expect = 4.1
 Identities = 15/44 (34%), Positives = 20/44 (45%), Gaps = 2/44 (4%)
 Frame = +1

Query: 64  EPEFRAGEPYIGRRYVDEGFPS--DRRGAFGPDIHDRNMYPPPP 189
           +P+F   E Y    Y+ E  P    R    G   H + +YPPPP
Sbjct: 14  DPKFPPCEEYSQNSYIPEHSPEYYGRTRESGFQHHHQELYPPPP 57

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>EP300_HUMAN (Q09472) E1A-associated protein p300 (EC 2.3.1.48)|
          Length = 2414

 Score = 28.5 bits (62), Expect = 4.1
 Identities = 11/31 (35%), Positives = 19/31 (61%)
 Frame = +2

Query: 161  MIEICIHHHPLLAPCGLSLEEILMKNSQLRK 253
            M +IC+ HH ++ P G   +  L K+++ RK
Sbjct: 1254 MHQICVLHHEIIWPAGFVCDGCLKKSARTRK 1284

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>SESN1_MOUSE (P58006) Sestrin-1 (p53-regulated protein PA26)|
          Length = 492

 Score = 28.5 bits (62), Expect = 4.1
 Identities = 22/85 (25%), Positives = 37/85 (43%), Gaps = 12/85 (14%)
 Frame = +2

Query: 2   DMLHIMDGRTTVHLMGMAPLMSQNLGLVNPTLVGDMWMKAFLVIEGVHLVQ--------- 154
           D LH+      ++ +  AP   QNLG +N  L    W+     IEG+   +         
Sbjct: 140 DFLHVGGDPKWLNGLENAPQKLQNLGELNKVLAHRPWLITKEHIEGLLKAEEHSWSLAEL 199

Query: 155 IYMIEICIHHHPLLA---PCGLSLE 220
           ++ + +  H+H L +    CG+S E
Sbjct: 200 VHAVVLLTHYHSLASFTFGCGISPE 224

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>SESN1_MACFA (Q4R6P7) Sestrin-1|
          Length = 492

 Score = 28.5 bits (62), Expect = 4.1
 Identities = 22/85 (25%), Positives = 37/85 (43%), Gaps = 12/85 (14%)
 Frame = +2

Query: 2   DMLHIMDGRTTVHLMGMAPLMSQNLGLVNPTLVGDMWMKAFLVIEGVHLVQ--------- 154
           D LH+      ++ +  AP   QNLG +N  L    W+     IEG+   +         
Sbjct: 140 DFLHVGGDPKWLNGLENAPQKLQNLGELNKVLAHRPWLITKEHIEGLLKAEEHSWSLAEL 199

Query: 155 IYMIEICIHHHPLLA---PCGLSLE 220
           ++ + +  H+H L +    CG+S E
Sbjct: 200 VHAVVLLTHYHSLASFTFGCGISPE 224

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>SESN1_HUMAN (Q9Y6P5) Sestrin-1 (p53-regulated protein PA26)|
          Length = 492

 Score = 28.5 bits (62), Expect = 4.1
 Identities = 22/85 (25%), Positives = 37/85 (43%), Gaps = 12/85 (14%)
 Frame = +2

Query: 2   DMLHIMDGRTTVHLMGMAPLMSQNLGLVNPTLVGDMWMKAFLVIEGVHLVQ--------- 154
           D LH+      ++ +  AP   QNLG +N  L    W+     IEG+   +         
Sbjct: 140 DFLHVGGDPKWLNGLENAPQKLQNLGELNKVLAHRPWLITKEHIEGLLKAEEHSWSLAEL 199

Query: 155 IYMIEICIHHHPLLA---PCGLSLE 220
           ++ + +  H+H L +    CG+S E
Sbjct: 200 VHAVVLLTHYHSLASFTFGCGISPE 224

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>PALI_MAGGR (Q51MB1) pH-response regulator protein palI/RIM9|
          Length = 736

 Score = 28.5 bits (62), Expect = 4.1
 Identities = 17/51 (33%), Positives = 21/51 (41%)
 Frame = +1

Query: 46  GYGAINEPEFRAGEPYIGRRYVDEGFPSDRRGAFGPDIHDRNMYPPPPTAG 198
           GYG      +  G P   R     G+    RG +GP  + R  Y PPP  G
Sbjct: 324 GYGPPGRGGYGYGPPPGSRG----GYGPPGRGGYGPGPNGRGGYGPPPRGG 370

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>ZEA9_MAIZE (P06677) Zein-alpha precursor (19 kDa) (Clone 19C2)|
          Length = 240

 Score = 28.5 bits (62), Expect = 4.1
 Identities = 16/47 (34%), Positives = 25/47 (53%), Gaps = 3/47 (6%)
 Frame = -1

Query: 369 TPILMISLIVVLSALVA---IFKLSTKLPTISASNPFVPSVIFRSCE 238
           T I  + +++ LS  VA   IF   ++ P  S   P++PS+I   CE
Sbjct: 3   TKIFSLLMLLALSTCVANATIFPQCSQAPIASLLPPYLPSIIASICE 49

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>ZEA6_MAIZE (P04702) Zein-alpha precursor (19 kDa) (Clone M6)|
          Length = 240

 Score = 28.5 bits (62), Expect = 4.1
 Identities = 16/47 (34%), Positives = 25/47 (53%), Gaps = 3/47 (6%)
 Frame = -1

Query: 369 TPILMISLIVVLSALVA---IFKLSTKLPTISASNPFVPSVIFRSCE 238
           T I  + +++ LS  VA   IF   ++ P  S   P++PS+I   CE
Sbjct: 3   TKIFSLLMLLALSTCVANATIFPQCSQAPIASLLPPYLPSIIASICE 49

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>LMBR1_CHICK (Q7ZUA6) Limb region 1 protein homolog|
          Length = 488

 Score = 28.1 bits (61), Expect = 5.4
 Identities = 14/50 (28%), Positives = 25/50 (50%), Gaps = 4/50 (8%)
 Frame = +2

Query: 41  LMGMAPLMSQNLGLVNPTLVGDM----WMKAFLVIEGVHLVQIYMIEICI 178
           L    P+MS+ LG+    L+GD     W+  F ++   +L+   M  +C+
Sbjct: 396 LSSALPVMSRTLGITRFDLLGDFGRFNWLGNFYIVLSYNLLFAIMTTLCL 445

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>MOG5_CAEEL (Q09530) Probable pre-mRNA-splicing factor ATP-dependent RNA|
           helicase mog-5 (EC 3.6.1.-) (Sex determination protein
           mog-5) (Masculinization of germ line protein 5)
          Length = 1200

 Score = 28.1 bits (61), Expect = 5.4
 Identities = 18/55 (32%), Positives = 24/55 (43%), Gaps = 1/55 (1%)
 Frame = +1

Query: 208 SQPRRNFDEEFATTKDY-RRNKRIGSRDRGEFGAEFEDRYQGGEDNYERDHQYGR 369
           S  +RN     + ++D  RR  R G RDR       EDR      + +RD   GR
Sbjct: 150 SDSKRNRSRSRSRSRDRKRRRSRSGDRDRRRRSRSREDRRDRDRRDRDRDRDRGR 204

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>NU4M_ANOGA (P34852) NADH-ubiquinone oxidoreductase chain 4 (EC 1.6.5.3) (NADH|
           dehydrogenase subunit 4)
          Length = 447

 Score = 28.1 bits (61), Expect = 5.4
 Identities = 26/119 (21%), Positives = 45/119 (37%), Gaps = 15/119 (12%)
 Frame = -1

Query: 363 ILMISLIVVLSALVAIFKLSTKLPTISASNPFVPSVIFRSCEF------FIKISSRLRPH 202
           +L +SL+      + +F +   LP      P   S+I             +++ S L+  
Sbjct: 183 LLYLSLVFAFLVKMPMFLVHLWLPKAHVEAPVSGSMILAGILLKLGGYGLLRMFSLLQIS 242

Query: 201 GASSGWWWIHISI---MYIWTKCTPSITRKAFI------HISPTNVGFTSPKFWLINGA 52
           G    +WWI IS+   + I   C      KA I      H+     G  +  +W + G+
Sbjct: 243 GVKYNYWWISISLVGGVLISLVCLRQTDLKALIAYSSVAHMGIVLSGLLTMTYWGLTGS 301

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>NU4M_ANOQU (P33511) NADH-ubiquinone oxidoreductase chain 4 (EC 1.6.5.3) (NADH|
           dehydrogenase subunit 4)
          Length = 448

 Score = 28.1 bits (61), Expect = 5.4
 Identities = 26/119 (21%), Positives = 45/119 (37%), Gaps = 15/119 (12%)
 Frame = -1

Query: 363 ILMISLIVVLSALVAIFKLSTKLPTISASNPFVPSVIFRSCEF------FIKISSRLRPH 202
           +L +SLI      + +F +   LP      P   S+I             +++ S L+  
Sbjct: 183 LLYLSLIFAFLVKMPMFLVHLWLPKAHVEAPVSGSMILAGILLKLGGYGLLRMFSLLQVS 242

Query: 201 GASSGWWWIHISI---MYIWTKCTPSITRKAFI------HISPTNVGFTSPKFWLINGA 52
           G    +WWI +S+   + I   C      KA I      H+     G  +  +W + G+
Sbjct: 243 GIKYNYWWISVSLIGGVLISLVCLRQTDLKALIAYSSVAHMGIVLSGLLTMTYWGLTGS 301

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>LMBR1_MOUSE (Q9JIT0) Limb region 1 protein|
          Length = 490

 Score = 28.1 bits (61), Expect = 5.4
 Identities = 14/50 (28%), Positives = 25/50 (50%), Gaps = 4/50 (8%)
 Frame = +2

Query: 41  LMGMAPLMSQNLGLVNPTLVGDM----WMKAFLVIEGVHLVQIYMIEICI 178
           L    P+MS+ LG+    L+GD     W+  F ++   +L+   M  +C+
Sbjct: 397 LSSALPVMSRTLGITRFDLLGDFGRFNWLGNFYIVLSYNLLFAIMTTLCL 446

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>GPDA_BACSK (Q5WGU2) Glycerol-3-phosphate dehydrogenase [NAD(P)+] (EC 1.1.1.94)|
           (NAD(P)H-dependent glycerol-3-phosphate dehydrogenase)
          Length = 340

 Score = 28.1 bits (61), Expect = 5.4
 Identities = 15/46 (32%), Positives = 24/46 (52%)
 Frame = +2

Query: 221 EILMKNSQLRKITEGTKGLEAEIVGSLVLSLKIATKAERTTMREII 358
           E  + N +L     G  G+E  + G   + L + TKA R T+R+I+
Sbjct: 47  ESYLPNIELPTTIRGYTGMEEALGGVEAIVLVVPTKAMRETVRKIV 92

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>CNN3_HUMAN (Q15417) Calponin-3 (Calponin, acidic isoform)|
          Length = 329

 Score = 28.1 bits (61), Expect = 5.4
 Identities = 12/30 (40%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
 Frame = +1

Query: 295 EFGAEFEDRYQGG-EDNYERDHQYGRYSCD 381
           ++ AE+ D Y G  +D+Y RD+QY     D
Sbjct: 299 DYQAEYPDEYHGEYQDDYPRDYQYSDQGID 328

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>ABRB_ECOLI (P75747) Protein abrB (AidB regulator)|
          Length = 348

 Score = 27.7 bits (60), Expect = 7.0
 Identities = 13/39 (33%), Positives = 21/39 (53%)
 Frame = -1

Query: 366 PILMISLIVVLSALVAIFKLSTKLPTISASNPFVPSVIF 250
           P+L   ++ VLS L++I  L+  LP      P +  +IF
Sbjct: 2   PVLQWGMLCVLSLLLSIGFLAVHLPAALLLGPMIAGIIF 40

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>FMRA_CALPA (Q01133) Antho-RFamide neuropeptides precursor [Contains:|
           Antho-RFamide]
          Length = 334

 Score = 27.7 bits (60), Expect = 7.0
 Identities = 11/34 (32%), Positives = 18/34 (52%)
 Frame = +1

Query: 271 RIGSRDRGEFGAEFEDRYQGGEDNYERDHQYGRY 372
           R G   +G FG EF+ R+   +  + R+   GR+
Sbjct: 96  RYGREFQGRFGREFQGRFGREQGRFGREEDQGRF 129

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>SEC1_MOUSE (P97353) Galactoside 2-alpha-L-fucosyltransferase 3 (EC 2.4.1.69)|
           (GDP-L-fucose:beta-D-galactoside
           2-alpha-L-fucosyltransferase 3) (Alpha(1,2)FT 3)
           (Fucosyltransferase 10) (Secretory blood group protein
           1)
          Length = 368

 Score = 27.7 bits (60), Expect = 7.0
 Identities = 10/28 (35%), Positives = 18/28 (64%)
 Frame = -2

Query: 185 GGGYIFLSCISGPNAPLRSLGKPSSTYL 102
           GG  ++L+  + PN+P  ++ KP + YL
Sbjct: 307 GGDTVYLANFTQPNSPFHTVFKPEAAYL 334

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>PALI_NEUCR (Q7SFN5) pH-response regulator protein palI/rim-9|
          Length = 705

 Score = 27.7 bits (60), Expect = 7.0
 Identities = 16/38 (42%), Positives = 18/38 (47%)
 Frame = +1

Query: 76  RAGEPYIGRRYVDEGFPSDRRGAFGPDIHDRNMYPPPP 189
           R G P  GR     G P + RG +GP    R  Y PPP
Sbjct: 337 RGGFPGPGR---GGGPPQNGRGGYGPPGRGRGGYGPPP 371

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>CAD96_DROME (Q9VBW3) Tyrosine kinase receptor Cad96Ca precursor (EC 2.7.10.1)|
           (Cadherin 96Ca) (Tyrosine kinase receptor HD-14)
          Length = 773

 Score = 27.7 bits (60), Expect = 7.0
 Identities = 10/31 (32%), Positives = 17/31 (54%)
 Frame = +1

Query: 97  GRRYVDEGFPSDRRGAFGPDIHDRNMYPPPP 189
           G + +  G P+ R G + P +   N++ PPP
Sbjct: 193 GVQSIRNGLPNSRPGGWYPPVPQNNIFGPPP 223

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>YP68_CAEEL (Q09217) Hypothetical protein B0495.8|
          Length = 313

 Score = 27.7 bits (60), Expect = 7.0
 Identities = 15/51 (29%), Positives = 24/51 (47%)
 Frame = +1

Query: 217 RRNFDEEFATTKDYRRNKRIGSRDRGEFGAEFEDRYQGGEDNYERDHQYGR 369
           R+  +E+  + + Y+R +  G RDRG    E    Y+G  D   R+    R
Sbjct: 237 RKEREEKLGSQRGYQRRESYGRRDRGGDRGE----YRGDRDRDRRNRDRSR 283

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>DBP7_GIBZE (Q4HZ68) ATP-dependent RNA helicase DBP7 (EC 3.6.1.-)|
          Length = 744

 Score = 27.7 bits (60), Expect = 7.0
 Identities = 16/51 (31%), Positives = 23/51 (45%)
 Frame = +1

Query: 208 SQPRRNFDEEFATTKDYRRNKRIGSRDRGEFGAEFEDRYQGGEDNYERDHQ 360
           S+ +R  D +F    DY+   R GSR +      F++   GG     R HQ
Sbjct: 61  SKRQRTDDGDFDNGFDYKSANRFGSRPK-----HFDNDGHGGASGQSRSHQ 106

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>BSN_RAT (O88778) Bassoon protein|
          Length = 3937

 Score = 27.7 bits (60), Expect = 7.0
 Identities = 20/61 (32%), Positives = 30/61 (49%), Gaps = 4/61 (6%)
 Frame = +1

Query: 163  DRNMYPPPPTAGTMWSQPRRNFDE-EFATTKDYRRNKR---IGSRDRGEFGAEFEDRYQG 330
            D   YPPP  + ++ S+ R+  DE  +   K+    +R   + SRD     AE +DR  G
Sbjct: 3378 DLASYPPPTVSSSLTSRSRKFQDEITYGLKKNVYEQQRYYGVSSRDT----AEEDDRMYG 3433

Query: 331  G 333
            G
Sbjct: 3434 G 3434

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>SYD_SYNP7 (Q31NM6) Aspartyl-tRNA synthetase (EC 6.1.1.12) (Aspartate--tRNA|
           ligase) (AspRS)
          Length = 599

 Score = 27.3 bits (59), Expect = 9.1
 Identities = 20/73 (27%), Positives = 33/73 (45%)
 Frame = +2

Query: 62  MSQNLGLVNPTLVGDMWMKAFLVIEGVHLVQIYMIEICIHHHPLLAPCGLSLEEILMKNS 241
           + + LGL++P  +  +W+  F ++E     + Y       HHP  AP    LE++    +
Sbjct: 422 LGKELGLIDPEALNLLWVVDFPMVEWNADEKRYE----ALHHPFTAPNPQDLEDLTTARA 477

Query: 242 QLRKITEGTKGLE 280
           Q   I     GLE
Sbjct: 478 QAYDIV--LNGLE 488

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>SYD_SYNP6 (Q5N5I8) Aspartyl-tRNA synthetase (EC 6.1.1.12) (Aspartate--tRNA|
           ligase) (AspRS)
          Length = 599

 Score = 27.3 bits (59), Expect = 9.1
 Identities = 20/73 (27%), Positives = 33/73 (45%)
 Frame = +2

Query: 62  MSQNLGLVNPTLVGDMWMKAFLVIEGVHLVQIYMIEICIHHHPLLAPCGLSLEEILMKNS 241
           + + LGL++P  +  +W+  F ++E     + Y       HHP  AP    LE++    +
Sbjct: 422 LGKELGLIDPEALNLLWVVDFPMVEWNADEKRYE----ALHHPFTAPNPQDLEDLTTARA 477

Query: 242 QLRKITEGTKGLE 280
           Q   I     GLE
Sbjct: 478 QAYDIV--LNGLE 488

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>YLPM1_MOUSE (Q9R0I7) YLP motif-containing protein 1 (Nuclear protein ZAP3)|
          Length = 1386

 Score = 27.3 bits (59), Expect = 9.1
 Identities = 14/37 (37%), Positives = 17/37 (45%)
 Frame = +1

Query: 127  SDRRGAFGPDIHDRNMYPPPPTAGTMWSQPRRNFDEE 237
            S RRG F    +DR    PP     M+   RR + EE
Sbjct: 995  SSRRGGFDRPSYDRKSDRPPYEGPPMFGGERRTYPEE 1031

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>DMP1_RAT (P98193) Dentin matrix acidic phosphoprotein 1 precursor (Dentin|
           matrix protein 1) (DMP-1) (AG1)
          Length = 489

 Score = 27.3 bits (59), Expect = 9.1
 Identities = 31/118 (26%), Positives = 45/118 (38%), Gaps = 23/118 (19%)
 Frame = +1

Query: 13  HHGWENNSAPDGYGAINEPE---FRAGEPYIGR-------RYVDEGFPSDRRGAFGPDIH 162
           HH  E +S P+   +  + E   +R G    G         + DEG  SD  G+   D  
Sbjct: 148 HHSDEADSRPEAGDSTQDSESEEYRVGGGSEGESSHGDGSEFDDEGMQSDDPGSTRSDRG 207

Query: 163 DRNM-------------YPPPPTAGTMWSQPRRNFDEEFATTKDYRRNKRIGSRDRGE 297
              M             + P  T  +  SQ     D EF++ K +RR++     DRGE
Sbjct: 208 HTRMSSAGIRSEESKGDHEPTSTQDSDDSQ-----DVEFSSRKSFRRSRVSEEDDRGE 260

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>CSPG2_BOVIN (P81282) Versican core protein precursor (Large fibroblast|
           proteoglycan) (Chondroitin sulfate proteoglycan core
           protein 2) (PG-M) (Glial hyaluronate-binding protein)
           (GHAP)
          Length = 3381

 Score = 27.3 bits (59), Expect = 9.1
 Identities = 14/41 (34%), Positives = 23/41 (56%)
 Frame = -1

Query: 375 TVTPILMISLIVVLSALVAIFKLSTKLPTISASNPFVPSVI 253
           TV+P L+  L V L  +  I  L T+LP I+   P + +++
Sbjct: 367 TVSPTLLEELQVGLDRMTPIVPLITELPVITTKVPPIGNIV 407


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.316    0.140    0.456 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 64,364,787
Number of Sequences: 219361
Number of extensions: 1523384
Number of successful extensions: 3457
Number of sequences better than 10.0: 45
Number of HSP's better than 10.0 without gapping: 3319
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3439
length of database: 80,573,946
effective HSP length: 103
effective length of database: 57,979,763
effective search space used: 1391514312
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result