ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl08b10
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_464248.1| Oryza sativa (japonica cultivar-group), mRNA 66 9e-08
2ref|XM_464247.1| Oryza sativa (japonica cultivar-group), mRNA 66 9e-08
3dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 60 6e-06
4dbj|AP005804.2| Oryza sativa (japonica cultivar-group) genomic D... 60 6e-06
5dbj|AK069161.1| Oryza sativa (japonica cultivar-group) cDNA clon... 60 6e-06
6gb|AY224056.1| Zea mays strain W64A clone MMP43 endosperm-specif... 46 0.083
7dbj|AK153631.1| Mus musculus 3 days neonate thymus cDNA, RIKEN f... 46 0.083
8dbj|AK159041.1| Mus musculus visual cortex cDNA, RIKEN full-leng... 46 0.083
9dbj|AK040555.1| Mus musculus 0 day neonate thymus cDNA, RIKEN fu... 46 0.083
10dbj|AK079157.1| Mus musculus 12 days embryo embryonic body betwe... 46 0.083
11dbj|AK086543.1| Mus musculus 15 days embryo head cDNA, RIKEN ful... 46 0.083
12ref|NM_177672.3| Mus musculus DNA segment, Chr 4, ERATO Doi 429,... 46 0.083
13emb|AL626808.28| Mouse DNA sequence from clone RP23-383I7 on chr... 46 0.083
14gb|AC099975.11| Mus musculus chromosome 5, clone RP23-23A2, comp... 44 0.33
15gb|AC116383.11| Mus musculus chromosome 5, clone RP23-15P21, com... 44 0.33
16emb|BX927311.7| Zebrafish DNA sequence from clone CH211-235E15 i... 42 1.3
17gb|AC130527.4| Mus musculus BAC clone RP23-56C10 from chromosome... 42 1.3
18gb|AC008532.7| Homo sapiens chromosome 19 clone CTC-483I11, comp... 42 1.3
19emb|AL691419.10| Mouse DNA sequence from clone RP23-95I4 on chro... 42 1.3
20ref|XM_414200.1| PREDICTED: Gallus gallus similar to chromosome ... 40 5.1
21gb|AC142270.4| Mus musculus BAC clone RP24-115G23 from chromosom... 40 5.1
22gb|AC109805.8| Mus musculus chromosome 3, clone RP23-91D14, comp... 40 5.1
23gb|AC109619.11| Mus musculus chromosome 19, clone RP23-427F6, co... 40 5.1
24emb|AL138753.8| Human DNA sequence from clone RP11-3L8 on chromo... 40 5.1
25ref|NM_073637.1| Caenorhabditis elegans Nuclear Hormone Receptor... 40 5.1
26gb|AC003037.1|AC003037 Homo sapiens Xp22 BAC GSHB 526D21 (Genome... 40 5.1
27emb|Z92825.1|CEC13C4 Caenorhabditis elegans Cosmid C13C4, comple... 40 5.1
28gb|AC131658.3| Mus musculus BAC clone RP23-239F24 from 3, comple... 40 5.1
29emb|AL845488.7| Mouse DNA sequence from clone RP23-215P8 on chro... 40 5.1
30emb|AL663027.9| Mouse DNA sequence from clone RP23-16P3 on chrom... 40 5.1 
>ref|XM_464248.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 4183

 Score = 65.9 bits (33), Expect = 9e-08
 Identities = 45/49 (91%)
 Strand = Plus / Plus

                                                            
Query: 252 agattacagaaggaacaaaaggattggaagcagagatcgtggggagttt 300
           ||||||||||||||||||||||||||| || ||||| |||| |||||||
Sbjct: 822 agattacagaaggaacaaaaggattgggagtagagaccgtgcggagttt 870



 Score = 60.0 bits (30), Expect = 6e-06
 Identities = 33/34 (97%)
 Strand = Plus / Plus

                                             
Query: 4   tatgctccacatcatggatgggagaacaacagtg 37
           ||||||||||| ||||||||||||||||||||||
Sbjct: 397 tatgctccacagcatggatgggagaacaacagtg 430



 Score = 48.1 bits (24), Expect = 0.021
 Identities = 66/80 (82%)
 Strand = Plus / Plus

                                                                       
Query: 43  gatgggtatggcgccattaatgagccagaatttagggctggtgaaccctacattggtagg 102
           ||||||||||| | ||| ||||  ||||| | |||||| |||| | |||||| |||||||
Sbjct: 610 gatgggtatggtgtcatcaatggcccagattatagggccggtggatcctacaatggtagg 669

                               
Query: 103 agatatgtggatgaaggctt 122
           || | ||||||||| |||||
Sbjct: 670 aggtttgtggatgatggctt 689
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>ref|XM_464247.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2787

 Score = 65.9 bits (33), Expect = 9e-08
 Identities = 45/49 (91%)
 Strand = Plus / Plus

                                                            
Query: 252 agattacagaaggaacaaaaggattggaagcagagatcgtggggagttt 300
           ||||||||||||||||||||||||||| || ||||| |||| |||||||
Sbjct: 51  agattacagaaggaacaaaaggattgggagtagagaccgtgcggagttt 99
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
               sequence
          Length = 35954743

 Score = 60.0 bits (30), Expect = 6e-06
 Identities = 33/34 (97%)
 Strand = Plus / Minus

                                                 
Query: 4       tatgctccacatcatggatgggagaacaacagtg 37
               ||||||||||| ||||||||||||||||||||||
Sbjct: 3630370 tatgctccacagcatggatgggagaacaacagtg 3630337



 Score = 46.1 bits (23), Expect = 0.083
 Identities = 35/39 (89%)
 Strand = Plus / Minus

                                                      
Query: 262     aggaacaaaaggattggaagcagagatcgtggggagttt 300
               ||||||||||||||||| || ||||| |||| |||||||
Sbjct: 3629596 aggaacaaaaggattgggagtagagaccgtgcggagttt 3629558



 Score = 40.1 bits (20), Expect = 5.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 159     acatgatagaaatatgtatccacc 182
               ||||||||||||| ||||||||||
Sbjct: 3629828 acatgatagaaatgtgtatccacc 3629805
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>dbj|AP005804.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
              clone:OSJNBa0085K21
          Length = 180714

 Score = 60.0 bits (30), Expect = 6e-06
 Identities = 33/34 (97%)
 Strand = Plus / Minus

                                                
Query: 4      tatgctccacatcatggatgggagaacaacagtg 37
              ||||||||||| ||||||||||||||||||||||
Sbjct: 111660 tatgctccacagcatggatgggagaacaacagtg 111627



 Score = 46.1 bits (23), Expect = 0.083
 Identities = 35/39 (89%)
 Strand = Plus / Minus

                                                     
Query: 262    aggaacaaaaggattggaagcagagatcgtggggagttt 300
              ||||||||||||||||| || ||||| |||| |||||||
Sbjct: 110886 aggaacaaaaggattgggagtagagaccgtgcggagttt 110848



 Score = 40.1 bits (20), Expect = 5.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 159    acatgatagaaatatgtatccacc 182
              ||||||||||||| ||||||||||
Sbjct: 111118 acatgatagaaatgtgtatccacc 111095
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>dbj|AK069161.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023008A08, full
           insert sequence
          Length = 4183

 Score = 60.0 bits (30), Expect = 6e-06
 Identities = 33/34 (97%)
 Strand = Plus / Plus

                                             
Query: 4   tatgctccacatcatggatgggagaacaacagtg 37
           ||||||||||| ||||||||||||||||||||||
Sbjct: 397 tatgctccacagcatggatgggagaacaacagtg 430



 Score = 58.0 bits (29), Expect = 2e-05
 Identities = 44/49 (89%)
 Strand = Plus / Plus

                                                            
Query: 252 agattacagaaggaacaaaaggattggaagcagagatcgtggggagttt 300
           ||||||||||||||||||||||||||| || || || |||| |||||||
Sbjct: 822 agattacagaaggaacaaaaggattgggagtagggaccgtgcggagttt 870



 Score = 48.1 bits (24), Expect = 0.021
 Identities = 66/80 (82%)
 Strand = Plus / Plus

                                                                       
Query: 43  gatgggtatggcgccattaatgagccagaatttagggctggtgaaccctacattggtagg 102
           ||||||||||| | ||| ||||  ||||| | |||||| |||| | |||||| |||||||
Sbjct: 610 gatgggtatggtgtcatcaatggcccagattatagggccggtggatcctacaatggtagg 669

                               
Query: 103 agatatgtggatgaaggctt 122
           || | ||||||||| |||||
Sbjct: 670 aggtttgtggatgatggctt 689
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>gb|AY224056.1| Zea mays strain W64A clone MMP43 endosperm-specific maternally
           demethylated fragment
          Length = 665

 Score = 46.1 bits (23), Expect = 0.083
 Identities = 38/43 (88%)
 Strand = Plus / Plus

                                                      
Query: 323 accaaggcggagaggacaactatgagagagatcatcaatatgg 365
           ||||| || |||| |||| |||||||||||||||| |||||||
Sbjct: 26  accaaagcagagatgacagctatgagagagatcatgaatatgg 68
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>dbj|AK153631.1| Mus musculus 3 days neonate thymus cDNA, RIKEN full-length enriched
            library, clone:A630026F13 product:hypothetical protein,
            full insert sequence
          Length = 3602

 Score = 46.1 bits (23), Expect = 0.083
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                       
Query: 191  ctgctggcaccatgtggtctcagcctc 217
            |||||||| ||||||||||||||||||
Sbjct: 2039 ctgctggccccatgtggtctcagcctc 2065
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>dbj|AK159041.1| Mus musculus visual cortex cDNA, RIKEN full-length enriched library,
            clone:K530042E13 product:hypothetical protein, full
            insert sequence
          Length = 3628

 Score = 46.1 bits (23), Expect = 0.083
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                       
Query: 191  ctgctggcaccatgtggtctcagcctc 217
            |||||||| ||||||||||||||||||
Sbjct: 2050 ctgctggccccatgtggtctcagcctc 2076
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>dbj|AK040555.1| Mus musculus 0 day neonate thymus cDNA, RIKEN full-length enriched
            library, clone:A430106G14 product:hypothetical protein,
            full insert sequence
          Length = 4069

 Score = 46.1 bits (23), Expect = 0.083
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                       
Query: 191  ctgctggcaccatgtggtctcagcctc 217
            |||||||| ||||||||||||||||||
Sbjct: 2487 ctgctggccccatgtggtctcagcctc 2513
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>dbj|AK079157.1| Mus musculus 12 days embryo embryonic body between diaphragm region
            and neck cDNA, RIKEN full-length enriched library,
            clone:9430091K04 product:hypothetical protein, full
            insert sequence
          Length = 3533

 Score = 46.1 bits (23), Expect = 0.083
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                       
Query: 191  ctgctggcaccatgtggtctcagcctc 217
            |||||||| ||||||||||||||||||
Sbjct: 1969 ctgctggccccatgtggtctcagcctc 1995
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>dbj|AK086543.1| Mus musculus 15 days embryo head cDNA, RIKEN full-length enriched
            library, clone:D930036F13 product:hypothetical protein,
            full insert sequence
          Length = 3625

 Score = 46.1 bits (23), Expect = 0.083
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                       
Query: 191  ctgctggcaccatgtggtctcagcctc 217
            |||||||| ||||||||||||||||||
Sbjct: 2044 ctgctggccccatgtggtctcagcctc 2070
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>ref|NM_177672.3| Mus musculus DNA segment, Chr 4, ERATO Doi 429, expressed
            (D4Ertd429e), transcript variant 2, mRNA
          Length = 3612

 Score = 46.1 bits (23), Expect = 0.083
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                       
Query: 191  ctgctggcaccatgtggtctcagcctc 217
            |||||||| ||||||||||||||||||
Sbjct: 2030 ctgctggccccatgtggtctcagcctc 2056
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>emb|AL626808.28| Mouse DNA sequence from clone RP23-383I7 on chromosome 4, complete
             sequence
          Length = 203992

 Score = 46.1 bits (23), Expect = 0.083
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                        
Query: 191   ctgctggcaccatgtggtctcagcctc 217
             |||||||| ||||||||||||||||||
Sbjct: 35297 ctgctggccccatgtggtctcagcctc 35271
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>gb|AC099975.11| Mus musculus chromosome 5, clone RP23-23A2, complete sequence
          Length = 213359

 Score = 44.1 bits (22), Expect = 0.33
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                            
Query: 254    attacagaaggaacaaaaggattggaagca 283
              |||||||||| ||| |||||||||||||||
Sbjct: 127427 attacagaagaaaccaaaggattggaagca 127398
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>gb|AC116383.11| Mus musculus chromosome 5, clone RP23-15P21, complete sequence
          Length = 259299

 Score = 44.1 bits (22), Expect = 0.33
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                           
Query: 254   attacagaaggaacaaaaggattggaagca 283
             |||||||||| ||| |||||||||||||||
Sbjct: 29118 attacagaagaaaccaaaggattggaagca 29089
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>emb|BX927311.7| Zebrafish DNA sequence from clone CH211-235E15 in linkage group 24,
              complete sequence
          Length = 162570

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 250    aaagattacagaaggaacaaa 270
              |||||||||||||||||||||
Sbjct: 137852 aaagattacagaaggaacaaa 137872
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>gb|AC130527.4| Mus musculus BAC clone RP23-56C10 from chromosome 1, complete sequence
          Length = 233538

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 106    tatgtggatgaaggctttcct 126
              |||||||||||||||||||||
Sbjct: 127718 tatgtggatgaaggctttcct 127698
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>gb|AC008532.7| Homo sapiens chromosome 19 clone CTC-483I11, complete sequence
          Length = 155127

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 297   gtttggtgctgagtttgaaga 317
             |||||||||||||||||||||
Sbjct: 61115 gtttggtgctgagtttgaaga 61135
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>emb|AL691419.10| Mouse DNA sequence from clone RP23-95I4 on chromosome 3, complete
             sequence
          Length = 249405

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 155   atatacatgatagaaatatgt 175
             |||||||||||||||||||||
Sbjct: 57487 atatacatgatagaaatatgt 57507
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>ref|XM_414200.1| PREDICTED: Gallus gallus similar to chromosome 16 open reading frame
            7; ATP synthase, subunit b-like (LOC415839), mRNA
          Length = 1239

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 187  cccactgctggcaccatgtg 206
            ||||||||||||||||||||
Sbjct: 1219 cccactgctggcaccatgtg 1238
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>gb|AC142270.4| Mus musculus BAC clone RP24-115G23 from chromosome 3, complete sequence
          Length = 170870

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 251    aagattacagaaggaacaaa 270
              ||||||||||||||||||||
Sbjct: 149219 aagattacagaaggaacaaa 149238
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>gb|AC109805.8| Mus musculus chromosome 3, clone RP23-91D14, complete sequence
          Length = 171006

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 251    aagattacagaaggaacaaa 270
              ||||||||||||||||||||
Sbjct: 147331 aagattacagaaggaacaaa 147350
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>gb|AC109619.11| Mus musculus chromosome 19, clone RP23-427F6, complete sequence
          Length = 170072

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 187   cccactgctggcaccatgtg 206
             ||||||||||||||||||||
Sbjct: 92500 cccactgctggcaccatgtg 92481
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>emb|AL138753.8| Human DNA sequence from clone RP11-3L8 on chromosome 9 Contains the
             TYRP1 gene for tyrosinase-related protein 1, the 3' end of
             a novel gene and the 5' end of a novel gene (FLJ38505
             FLJ90271), complete sequence
          Length = 162151

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 220   agaaattttgatgaagaatt 239
             ||||||||||||||||||||
Sbjct: 31543 agaaattttgatgaagaatt 31524
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>ref|NM_073637.1| Caenorhabditis elegans Nuclear Hormone Receptor family member
            (nhr-153) (nhr-153) mRNA, complete cds
          Length = 1248

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 257  acagaaggaacaaaaggatt 276
            ||||||||||||||||||||
Sbjct: 1128 acagaaggaacaaaaggatt 1147
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>gb|AC003037.1|AC003037 Homo sapiens Xp22 BAC GSHB 526D21 (Genome Systems Human BAC library)
             complete sequence
          Length = 213863

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 7     gctccacatcatggatgggagaac 30
             |||||| |||||||||||||||||
Sbjct: 48186 gctccagatcatggatgggagaac 48163
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>emb|Z92825.1|CEC13C4 Caenorhabditis elegans Cosmid C13C4, complete sequence
          Length = 25002

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 257  acagaaggaacaaaaggatt 276
            ||||||||||||||||||||
Sbjct: 4565 acagaaggaacaaaaggatt 4584
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>gb|AC131658.3| Mus musculus BAC clone RP23-239F24 from 3, complete sequence
          Length = 200955

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 251    aagattacagaaggaacaaa 270
              ||||||||||||||||||||
Sbjct: 155984 aagattacagaaggaacaaa 155965
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>emb|AL845488.7| Mouse DNA sequence from clone RP23-215P8 on chromosome 2, complete
             sequence
          Length = 153445

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 59    ttaatgagccagaatttagg 78
             ||||||||||||||||||||
Sbjct: 59635 ttaatgagccagaatttagg 59654
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>emb|AL663027.9| Mouse DNA sequence from clone RP23-16P3 on chromosome 2, complete
              sequence
          Length = 219778

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 178    ccaccaccacccactgctgg 197
              ||||||||||||||||||||
Sbjct: 106426 ccaccaccacccactgctgg 106445


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,854,616
Number of Sequences: 3902068
Number of extensions: 3854616
Number of successful extensions: 66233
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 66158
Number of HSP's gapped (non-prelim): 75
length of query: 384
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 362
effective length of database: 17,147,199,772
effective search space: 6207286317464
effective search space used: 6207286317464
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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