>LONH1_MAIZE (P93647) Lon protease homolog 1, mitochondrial precursor (EC|
           3.4.21.-)
          Length = 885

 Score =  171 bits (432), Expect = 1e-42
 Identities = 88/118 (74%), Positives = 94/118 (79%)
 Frame = +1

Query: 103 PVELPGRLAILPFRNKVLLPGAIVRIRCTTPSSVKLVEQELWQREDKGLIGVLPVRDSEA 282
           PVELP RLA+LPFRNKVLLPGAIVRIRCT PSSVKLVEQELWQ+E+KGLIGVLPVRDSEA
Sbjct: 5   PVELPSRLAVLPFRNKVLLPGAIVRIRCTNPSSVKLVEQELWQKEEKGLIGVLPVRDSEA 64

Query: 283 AAVGSILXXXXXXXXXXXXXXXXXASGGESSKQDAKSGKEPIHWHSRGVAARALHLSR 456
            AVGS+L                  S  ESSKQD K+GKEPIHWHS+GVAARALHLSR
Sbjct: 65  TAVGSLL-SPGVGSDSGEGGSKVGGSAVESSKQDTKNGKEPIHWHSKGVAARALHLSR 121

>LONH1_SPIOL (O04979) Lon protease homolog 1, mitochondrial precursor (EC|
           3.4.21.-)
          Length = 875

 Score =  139 bits (351), Expect = 3e-33
 Identities = 74/118 (62%), Positives = 86/118 (72%), Gaps = 1/118 (0%)
 Frame = +1

Query: 106 VELPGRLAILPFRNKVLLPGAIVRIRCTTPSSVKLVEQELWQREDKGLIGVLPVRD-SEA 282
           VELP RL IL FRNKVLLPGAI+RIRCT+PSSVKLVEQELWQRE+KGLIG++PVRD SE+
Sbjct: 5   VELPSRLGILAFRNKVLLPGAIIRIRCTSPSSVKLVEQELWQREEKGLIGIVPVRDASES 64

Query: 283 AAVGSILXXXXXXXXXXXXXXXXXASGGESSKQDAKSGKEPIHWHSRGVAARALHLSR 456
           A+V  +L                     +S K D KS +E +HWH+RGVAARALHLSR
Sbjct: 65  ASVAPVLYPGGGTDSGERNVKSQPGL-SDSRKADGKSQQEAVHWHTRGVAARALHLSR 121

>LONH1_ARATH (O64948) Lon protease homolog 1, mitochondrial precursor (EC|
           3.4.21.-)
          Length = 888

 Score =  129 bits (324), Expect = 4e-30
 Identities = 68/118 (57%), Positives = 87/118 (73%), Gaps = 1/118 (0%)
 Frame = +1

Query: 106 VELPGRLAILPFRNKVLLPGAIVRIRCTTPSSVKLVEQELWQREDKGLIGVLPVR-DSEA 282
           VELP RLAILPFRNKVLLPGAI+RIRCT+ SSV LVEQELWQ+E+KGLIG+LPVR D+E 
Sbjct: 5   VELPSRLAILPFRNKVLLPGAIIRIRCTSHSSVTLVEQELWQKEEKGLIGILPVRDDAEG 64

Query: 283 AAVGSILXXXXXXXXXXXXXXXXXASGGESSKQDAKSGKEPIHWHSRGVAARALHLSR 456
           +++G+++                  +  ++ K DAK  ++ + WH+RGVAARALHLSR
Sbjct: 65  SSIGTMINPGAGSDSGERSLKFLVGT-TDAQKSDAKD-QQDLQWHTRGVAARALHLSR 120

>LON2_MYXXA (P36774) ATP-dependent protease La 2 (EC 3.4.21.53)|
          Length = 826

 Score = 32.7 bits (73), Expect = 0.45
 Identities = 18/63 (28%), Positives = 32/63 (50%)
 Frame = +1

Query: 109 ELPGRLAILPFRNKVLLPGAIVRIRCTTPSSVKLVEQELWQREDKGLIGVLPVRDSEAAA 288
           ++P  L ILP RN V  PG ++ +      ++ L++  +    D  +IGV+  R +E   
Sbjct: 27  DIPQVLPILPLRNSVFFPGGVLPLAVGRQKTIALIKDAV---RDDQVIGVVTQRRAEEED 83

Query: 289 VGS 297
            G+
Sbjct: 84  PGA 86

>RECX_DEIRA (Q9RUS2) Regulatory protein recX|
          Length = 204

 Score = 29.6 bits (65), Expect = 3.8
 Identities = 16/53 (30%), Positives = 27/53 (50%), Gaps = 7/53 (13%)
 Frame = -2

Query: 382 PVCSTLPQ--KHQATGGLLPLNHRPLQ-----ATGSNQQPQPQSPAREAPQSD 245
           PVC   P   K  ++GG+LP+ +RP +     A+    +P+P+ P     Q +
Sbjct: 2   PVCGRRPWQVKRSSSGGILPVMYRPRRRSSTPASEGEAEPRPRRPKTREEQRE 54

>SNX15_HUMAN (Q9NRS6) Sorting nexin-15|
          Length = 342

 Score = 29.3 bits (64), Expect = 5.0
 Identities = 19/51 (37%), Positives = 22/51 (43%), Gaps = 4/51 (7%)
 Frame = -2

Query: 397 SRSLH----PVCSTLPQKHQATGGLLPLNHRPLQATGSNQQPQPQSPAREA 257
           SR LH    P+  T P        LLP   R L+       P P SPA+EA
Sbjct: 135 SRDLHILPPPLIPTPPPDDPRLSQLLPAERRGLEELEVPVDPPPSSPAQEA 185

>SMG7_HUMAN (Q92540) Protein SMG7 (SMG-7 homolog) (EST1-like protein C)|
          Length = 1137

 Score = 29.3 bits (64), Expect = 5.0
 Identities = 15/42 (35%), Positives = 20/42 (47%)
 Frame = -2

Query: 373 STLPQKHQATGGLLPLNHRPLQATGSNQQPQPQSPAREAPQS 248
           S +P   Q   G  P+N  P Q+   +QQP    PA+   QS
Sbjct: 714 SHIPYSQQRPSGPGPMNQGPQQSQPPSQQPLTSLPAQPTAQS 755

>PCLO_RAT (Q9JKS6) Protein piccolo (Aczonin) (Multidomain presynaptic|
           cytomatrix protein)
          Length = 5085

 Score = 29.3 bits (64), Expect = 5.0
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = -2

Query: 331 PLNHRPLQATGSNQQPQPQSPAREAPQ 251
           P   +P Q T +  QPQP +PA+  PQ
Sbjct: 432 PAKPQPQQPTPAKPQPQPPTPAKPQPQ 458

>SSBW_PSEPU (Q8VMM4) Single-stranded DNA-binding protein (SSB)|
           (Helix-destabilizing protein)
          Length = 180

 Score = 28.9 bits (63), Expect = 6.6
 Identities = 15/38 (39%), Positives = 19/38 (50%)
 Frame = -2

Query: 364 PQKHQATGGLLPLNHRPLQATGSNQQPQPQSPAREAPQ 251
           PQ  Q  G        P    GSNQQP+ Q+P ++ PQ
Sbjct: 115 PQNQQQGGD-------PYNQGGSNQQPRQQAPRQQRPQ 145

>VG1_BPIKE (P03658) Gene I protein|
          Length = 365

 Score = 28.9 bits (63), Expect = 6.6
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = +3

Query: 282 CGCWFDPVAWSGR*FRGRRPPVAWCFWGR 368
           CG WF+   WS    + R+P + WC   R
Sbjct: 90  CGTWFNSRNWSD---KSRQPVIDWCLHAR 115

>CLCN1_HUMAN (P35523) Chloride channel protein, skeletal muscle (Chloride|
           channel protein 1) (ClC-1)
          Length = 988

 Score = 28.9 bits (63), Expect = 6.6
 Identities = 19/53 (35%), Positives = 24/53 (45%)
 Frame = -2

Query: 412 SEWAPSRSLHPVCSTLPQKHQATGGLLPLNHRPLQATGSNQQPQPQSPAREAP 254
           SE  PS +LHP  +T P   +   G LP         G  QQP+   PA + P
Sbjct: 723 SELPPSLALHP-STTAPLSPEEPNGPLP---------GHKQQPEAPEPAGQRP 765

>GDBX_WHEAT (P21292) Gamma-gliadin precursor|
          Length = 302

 Score = 28.9 bits (63), Expect = 6.6
 Identities = 14/41 (34%), Positives = 20/41 (48%)
 Frame = -2

Query: 370 TLPQKHQATGGLLPLNHRPLQATGSNQQPQPQSPAREAPQS 248
           T+PQ HQ        +H+P Q     QQ  P  P ++ PQ+
Sbjct: 51  TIPQPHQT------FHHQPQQTFPQPQQTYPHQPQQQFPQT 85

>TROAP_HUMAN (Q12815) Trophinin-associated protein (Tastin) (Trophinin-assisting|
           protein)
          Length = 778

 Score = 28.5 bits (62), Expect = 8.6
 Identities = 12/28 (42%), Positives = 17/28 (60%), Gaps = 6/28 (21%)
 Frame = -2

Query: 427 LPGCASEWAPS------RSLHPVCSTLP 362
           LP C S+WAP+       S HP+C++ P
Sbjct: 658 LPPCCSQWAPATTSLIFSSQHPLCASPP 685

>MICA1_HUMAN (Q8TDZ2) NEDD9-interacting protein with calponin homology and LIM|
           domains (Molecule interacting with CasL protein 1)
          Length = 1067

 Score = 28.5 bits (62), Expect = 8.6
 Identities = 12/40 (30%), Positives = 19/40 (47%)
 Frame = -1

Query: 143 RNGSMASRPGSSTGASAMAADALLWCVRRTAGGTGIRVEE 24
           RN         +TG++    + L WC  +TAG  G+ V +
Sbjct: 493 RNNDKTDTGMPATGSAGTQEELLRWCQEQTAGYPGVHVSD 532

>CRT10_YEAST (Q08226) Protein CRT10 (Constitutive RNR transcription regulator|
           10)
          Length = 957

 Score = 28.5 bits (62), Expect = 8.6
 Identities = 14/35 (40%), Positives = 17/35 (48%)
 Frame = -2

Query: 406 WAPSRSLHPVCSTLPQKHQATGGLLPLNHRPLQAT 302
           W PSR L+P    LPQ  +     +PL   P Q T
Sbjct: 119 WGPSRLLNPAELLLPQDEKLLVQEIPLEFAPFQYT 153

>AMEL_MONDO (Q28462) Amelogenin|
          Length = 202

 Score = 28.5 bits (62), Expect = 8.6
 Identities = 14/44 (31%), Positives = 20/44 (45%)
 Frame = -2

Query: 385 HPVCSTLPQKHQATGGLLPLNHRPLQATGSNQQPQPQSPAREAP 254
           H +   L Q+H  +  L P +H P+ A  + Q   PQ P    P
Sbjct: 48  HQIIPVLSQQHSPSHSLPPQHHIPIMA--AQQPAPPQQPVMPVP 89


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 63,899,241
Number of Sequences: 219361
Number of extensions: 1153042
Number of successful extensions: 3871
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 3664
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3861
length of database: 80,573,946
effective HSP length: 102
effective length of database: 58,199,124
effective search space used: 2909956200
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)