ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | bastl08b06 |
|---|---|
| Clone Library Name | barley_pub |
>JMJ2_SCHPO (Q9US53) Jumonji/ARID domain-containing protein 2| Length = 715 Score = 31.6 bits (70), Expect = 0.52 Identities = 13/21 (61%), Positives = 16/21 (76%) Frame = +2 Query: 251 APVFTPTEEEFKDAIGYTTSI 313 APVF P +EEF+D+IGY I Sbjct: 60 APVFYPDKEEFQDSIGYINKI 80
>ITA7_MOUSE (Q61738) Integrin alpha-7 precursor [Contains: Integrin alpha-7| heavy chain; Integrin alpha-7 light chain] Length = 1179 Score = 31.6 bits (70), Expect = 0.52 Identities = 16/47 (34%), Positives = 25/47 (53%) Frame = -3 Query: 309 LVVYPIASLNSSSVGVKTGASSISGLFDSSGCHFPYVCDGPAAEAGS 169 +VV P L +VG+K+ S+SG D G H+P + G A+ + Sbjct: 465 VVVKPSQVLEGEAVGIKSFGYSLSGGLDVDGNHYPDLLVGSLADTAA 511
>ITA7_RAT (Q63258) Integrin alpha-7 (H36-alpha7) [Contains: Integrin alpha-7| heavy chain; Integrin alpha-7 light chain] Length = 1106 Score = 30.0 bits (66), Expect = 1.5 Identities = 15/47 (31%), Positives = 24/47 (51%) Frame = -3 Query: 309 LVVYPIASLNSSSVGVKTGASSISGLFDSSGCHFPYVCDGPAAEAGS 169 +V P L +VG+K+ S+SG D G H+P + G A+ + Sbjct: 393 VVTKPSQVLEGEAVGIKSFGYSLSGGLDVDGNHYPDLLVGSLADTAA 439
>JAD1D_MOUSE (Q62240) Jumonji/ARID domain-containing protein 1D (SmcY protein)| (Histocompatibility Y antigen) (H-Y) Length = 1548 Score = 28.9 bits (63), Expect = 3.4 Identities = 11/23 (47%), Positives = 15/23 (65%) Frame = +2 Query: 248 DAPVFTPTEEEFKDAIGYTTSIR 316 + PVF P+ EF+D +GY IR Sbjct: 13 ECPVFEPSWAEFRDPLGYIAKIR 35
>JAD1C_MOUSE (P41230) Jumonji/ARID domain-containing protein 1C (SmcX protein)| (Xe169 protein) Length = 1554 Score = 28.9 bits (63), Expect = 3.4 Identities = 11/23 (47%), Positives = 15/23 (65%) Frame = +2 Query: 248 DAPVFTPTEEEFKDAIGYTTSIR 316 + PVF P+ EF+D +GY IR Sbjct: 13 ECPVFEPSWAEFRDPLGYIAKIR 35
>JAD1C_HUMAN (P41229) Jumonji/ARID domain-containing protein 1C (SmcX protein)| (Xe169 protein) Length = 1560 Score = 28.9 bits (63), Expect = 3.4 Identities = 11/23 (47%), Positives = 15/23 (65%) Frame = +2 Query: 248 DAPVFTPTEEEFKDAIGYTTSIR 316 + PVF P+ EF+D +GY IR Sbjct: 13 ECPVFEPSWAEFRDPLGYIAKIR 35
>JAD1D_PANTR (Q5XUN4) Jumonji/ARID domain-containing protein 1D (SmcY protein)| Length = 1535 Score = 28.5 bits (62), Expect = 4.4 Identities = 11/23 (47%), Positives = 15/23 (65%) Frame = +2 Query: 248 DAPVFTPTEEEFKDAIGYTTSIR 316 + PVF P+ EF+D +GY IR Sbjct: 13 ECPVFEPSWAEFQDPLGYIAKIR 35
>JAD1D_HUMAN (Q9BY66) Jumonji/ARID domain-containing protein 1D (SmcY protein)| (Histocompatibility Y antigen) (H-Y) Length = 1539 Score = 28.5 bits (62), Expect = 4.4 Identities = 11/23 (47%), Positives = 15/23 (65%) Frame = +2 Query: 248 DAPVFTPTEEEFKDAIGYTTSIR 316 + PVF P+ EF+D +GY IR Sbjct: 13 ECPVFEPSWAEFQDPLGYIAKIR 35
>RIP3_ORYSA (Q9FWT5) Ripening-related protein 3 precursor| Length = 213 Score = 27.7 bits (60), Expect = 7.6 Identities = 22/75 (29%), Positives = 29/75 (38%), Gaps = 10/75 (13%) Frame = -3 Query: 300 YPIASLNSSSV----GVKTGASSISGLFDSSGC------HFPYVCDGPAAEAGSGEAVLP 151 +P SL SS G TG S + S C + Y C P A G+G A L Sbjct: 43 FPHRSLLQSSSCQPSGAITGTSGDCNADNGSECCQDGVQYMTYACSPPVAAGGTGTAALL 102 Query: 150 RILLFSPRSEGKRGP 106 + F+ +G P Sbjct: 103 TLNSFADGGDGGGAP 117
>B3GT4_RAT (O88178) Beta-1,3-galactosyltransferase 4 (EC 2.4.1.62)| (Beta-1,3-GalTase 4) (Beta3Gal-T4) (b3Gal-T4) (Ganglioside galactosyltransferase) (UDP-galactose:beta-N-acetyl-galactosamine-beta-1, 3-galactosyltransferase) (GAL-T2) Length = 371 Score = 27.7 bits (60), Expect = 7.6 Identities = 12/30 (40%), Positives = 18/30 (60%) Frame = -3 Query: 189 PAAEAGSGEAVLPRILLFSPRSEGKRGPPP 100 PA + LPR+L+ +P++ G GPPP Sbjct: 42 PAPASPGPPLALPRLLIPNPQACGGSGPPP 71
>CLMN_MOUSE (Q8C5W0) Calmin| Length = 1052 Score = 27.7 bits (60), Expect = 7.6 Identities = 10/14 (71%), Positives = 13/14 (92%) Frame = -3 Query: 135 SPRSEGKRGPPPSS 94 SP S+G++GPPPSS Sbjct: 524 SPSSQGEKGPPPSS 537
>ITA7_HUMAN (Q13683) Integrin alpha-7 precursor [Contains: Integrin alpha-7| heavy chain; Integrin alpha-7 light chain] Length = 1181 Score = 27.7 bits (60), Expect = 7.6 Identities = 14/44 (31%), Positives = 22/44 (50%) Frame = -3 Query: 309 LVVYPIASLNSSSVGVKTGASSISGLFDSSGCHFPYVCDGPAAE 178 +V P L +VG+K+ S+SG D G +P + G A+ Sbjct: 465 VVAKPSQVLEGEAVGIKSFGYSLSGSLDMDGNQYPDLLVGSLAD 508
>RAE2_MOUSE (Q9QZD5) Rab proteins geranylgeranyltransferase component A 2 (Rab| escort protein 2) (REP-2) (Choroideraemia-like protein) Length = 621 Score = 27.3 bits (59), Expect = 9.9 Identities = 21/53 (39%), Positives = 24/53 (45%), Gaps = 5/53 (9%) Frame = -3 Query: 240 SGLFDSSGCHFP---YVCDGPAAEAGSGEAVLPRILLFSP--RSEGKRGPPPS 97 SG+ SS C P Y+C GP GS AV LF SE PPP+ Sbjct: 559 SGVSRSSYCGLPSNVYICSGPDWGLGSEHAVKQAETLFQEIFPSEEFCPPPPN 611
>PGCA_RAT (P07897) Aggrecan core protein precursor (Cartilage-specific| proteoglycan core protein) (CSPCP) Length = 2124 Score = 27.3 bits (59), Expect = 9.9 Identities = 12/26 (46%), Positives = 17/26 (65%) Frame = -3 Query: 294 IASLNSSSVGVKTGASSISGLFDSSG 217 +A ++ GV+TG+S SG FD SG Sbjct: 1531 VAEVSGEVSGVETGSSLSSGAFDGSG 1556
>OAT6_MOUSE (Q80UJ1) Solute carrier family 22 member 20 (Organic anion| transporter 6) Length = 556 Score = 27.3 bits (59), Expect = 9.9 Identities = 11/27 (40%), Positives = 17/27 (62%) Frame = -2 Query: 292 CIFEFLLGWSKNRSIINFRSVRFIWMP 212 C+F FL+G + + I+N S+ WMP Sbjct: 191 CVFRFLMGMTFSGIILNSLSLVVEWMP 217 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 34,259,083 Number of Sequences: 219361 Number of extensions: 521106 Number of successful extensions: 1248 Number of sequences better than 10.0: 15 Number of HSP's better than 10.0 without gapping: 1230 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1248 length of database: 80,573,946 effective HSP length: 81 effective length of database: 62,805,705 effective search space used: 1507336920 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
