>NKX31_MOUSE (P97436) Homeobox protein Nkx-3.1|
          Length = 237

 Score = 28.5 bits (62), Expect = 7.9
 Identities = 15/40 (37%), Positives = 19/40 (47%)
 Frame = +1

Query: 121 NPAHSSAPQSISTPTRSIGGTFCSKSRGIAPESPTAETHT 240
           NP HS  P+  S P     G      RG+APE P +  H+
Sbjct: 52  NPQHSPDPRRDSAPEPDKAG-----GRGVAPEDPPSIRHS 86

>RLUD_PASMU (Q9CKA6) Ribosomal large subunit pseudouridine synthase D (EC|
           5.4.99.-) (rRNA-uridine isomerase D) (rRNA
           pseudouridylate synthase D)
          Length = 324

 Score = 28.5 bits (62), Expect = 7.9
 Identities = 17/48 (35%), Positives = 25/48 (52%), Gaps = 7/48 (14%)
 Frame = -2

Query: 418 VSKIGVASKRDRVPSGC-------PRQSKGSRRDQRRKITREPSLVAC 296
           V + G+  + D+  +G        P Q+K  R  Q+RKITRE   +AC
Sbjct: 128 VPRAGIVHRLDKDTTGLMVIAKTIPAQTKLVRDLQKRKITREYEAIAC 175


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 40,224,877
Number of Sequences: 219361
Number of extensions: 587781
Number of successful extensions: 2316
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2267
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2316
length of database: 80,573,946
effective HSP length: 102
effective length of database: 58,199,124
effective search space used: 2677159704
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)