ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl08b04
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|NM_005180.5| Homo sapiens B lymphoma Mo-MLV insertion region... 46 0.097
2emb|AL158211.29| Human DNA sequence from clone RP11-573G6 on chr... 46 0.097
3gb|BC011652.2| Homo sapiens polycomb group ring finger 4, mRNA (... 46 0.097
4gb|L13689.1|HUMBMI1X Human prot-oncogene (BMI-1) mRNA, complete cds 46 0.097
5gb|AC096039.7| Rattus norvegicus 4 BAC CH230-29I22 (Children's H... 42 1.5
6gb|CP000249.1| Frankia sp. CcI3, complete genome 42 1.5
7gb|DP000053.1| Oryctolagus cuniculus target 126 genomic scaffold 42 1.5
8gb|AC158313.7| Mus musculus chromosome 8, clone RP23-246H16, com... 42 1.5
9gb|AC153881.4| Mus musculus 10 BAC RP23-257B9 (Roswell Park Canc... 42 1.5
10gb|AF135793.1|AF135793 Fundulus heteroclitus sister of P-glycopr... 42 1.5
11gb|AC116825.23| Mus musculus chromosome 8, clone RP24-367H14, co... 40 6.0
12ref|NM_118797.3| Arabidopsis thaliana unknown protein AT4G26630 ... 40 6.0
13ref|NM_001036647.1| Arabidopsis thaliana unknown protein AT4G266... 40 6.0
14ref|NM_186089.2| Oryza sativa (japonica cultivar-group), mRNA 40 6.0
15ref|XM_506548.1| PREDICTED Oryza sativa (japonica cultivar-group... 40 6.0
16gb|AC119288.4| Oryza sativa (japonica cultivar-group) chromosome... 40 6.0
17gb|AY023232.1| Oryza sativa microsatellite MRG5557 containing (G... 40 6.0
18gb|CP000143.1| Rhodobacter sphaeroides 2.4.1 chromosome 1, compl... 40 6.0
19gb|AC164703.3| Mus musculus BAC clone RP23-266K19 from chromosom... 40 6.0
20gb|AC137614.2| Oryza sativa (japonica cultivar-group) chromosome... 40 6.0
21gb|AY491681.1| Triticum monococcum DV92 BAC 109N23, complete seq... 40 6.0
22gb|AC124508.5| Mus musculus BAC clone RP23-433B5 from chromosome... 40 6.0
23emb|CT009510.7| Mouse DNA sequence from clone RP23-47H16 on chro... 40 6.0
24ref|XM_801799.1| Trypanosoma cruzi strain CL Brener transcriptio... 40 6.0
25ref|XM_807630.1| Trypanosoma cruzi strain CL Brener transcriptio... 40 6.0
26gb|AC129544.7| Mus musculus chromosome 12, clone RP23-258H6, com... 40 6.0
27gb|AC152752.18| Medicago truncatula clone mth2-89c9, complete se... 40 6.0
28gb|AC104276.2| Oryza sativa (japonica cultivar-group) chromosome... 40 6.0
29gb|AC116842.6| Mus musculus, clone RP24-390P7, complete sequence 40 6.0
30gb|AC095390.9| Rattus norvegicus 12 BAC CH230-7C24 (Children's H... 40 6.0
31emb|AL137162.25| Human DNA sequence from clone RP5-843L14 on chr... 40 6.0
32emb|AL031430.2|HS406M12 Human DNA sequence from clone RP3-406M12... 40 6.0
33gb|AC164299.2| Mus musculus BAC clone RP23-313K8 from chromosome... 40 6.0
34gb|AC157546.7| Mus musculus chromosome 19, clone RP23-325I11, co... 40 6.0
35emb|AL662843.11| Mouse DNA sequence from clone RP23-411E22 on ch... 40 6.0
36emb|AL161565.2|ATCHRIV65 Arabidopsis thaliana DNA chromosome 4, ... 40 6.0
37emb|AL078465.1|ATT15N24 Arabidopsis thaliana DNA chromosome 4, B... 40 6.0
38gb|BT008491.1| Arabidopsis thaliana At4g26630 gene, complete cds 40 6.0
39emb|AJ719537.1| Gallus gallus mRNA for hypothetical protein, clo... 40 6.0
40ref|NM_001006152.1| Gallus gallus protein phosphatase 2 (formerl... 40 6.0
41gb|AC010660.6| Drosophila melanogaster 3L BAC RP98-9I16 (Roswell... 40 6.0
42tpg|BK002178.1| TPA: TPA_inf: Drosophila melanogaster HDC10482 (... 40 6.0
43gb|AC079262.28| Homo sapiens 12 BAC RP11-560H17 (Roswell Park Ca... 40 6.0
44gb|AY093124.1| Arabidopsis thaliana putative protein (At4g26630)... 40 6.0
45gb|AC079317.25| Homo sapiens 12 BAC RP11-4K23 (Roswell Park Canc... 40 6.0
46gb|AF139373.2| Mus musculus calpain small subunit gene, exons 3 ... 40 6.0
47gb|AC020556.7| Homo sapiens BAC clone RP11-507B10 from 4, comple... 40 6.0
48ref|XM_628287.1| Cryptosporidium parvum Iowa II hypothetical pro... 40 6.0
49gb|AC159880.2| Mus musculus BAC clone RP24-490L14 from chromosom... 40 6.0
50dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.0
51dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.0
52gb|AC019106.3| Homo sapiens BAC clone RP11-479L11 from 2, comple... 40 6.0
53ref|XM_218939.3| PREDICTED: Rattus norvegicus hepatitis B virus ... 40 6.0
54dbj|AP004274.5| Oryza sativa (japonica cultivar-group) genomic D... 40 6.0
55dbj|AP003743.4| Oryza sativa (japonica cultivar-group) genomic D... 40 6.0
56dbj|AK071159.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 6.0
57emb|AL359792.3|CNS05TF1 Human chromosome 14 DNA sequence BAC R-7... 40 6.0
58gb|AC155260.2| Mus musculus BAC clone RP24-71G3 from 12, complet... 40 6.0
59dbj|AK060587.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 6.0
60gb|AC004811.2|AC004811 Homo sapiens clone 162B15, complete sequence 40 6.0
61gb|AE003527.3| Drosophila melanogaster chromosome 3L, section 58... 40 6.0
62gb|AC115835.6| Mus musculus chromosome 3, clone RP24-184C18, com... 40 6.0
63emb|AL807747.10| Mouse DNA sequence from clone RP23-300N21 on ch... 40 6.0
64emb|AL845271.10| Mouse DNA sequence from clone RP23-119O19 on ch... 40 6.0
65gb|AC140213.2| Mus musculus BAC clone RP23-270L5 from 7, complet... 40 6.0
66gb|AC134987.5| Mus musculus BAC clone RP23-117E24 from 14, compl... 40 6.0
67emb|CT025619.9| Mouse DNA sequence from clone RP23-442M18 on chr... 40 6.0
68dbj|AB216749.1| Equus caballus DNA, microsatellite TKY2806 40 6.0
69gb|AC138622.4| Mus musculus BAC clone RP23-100J15 from chromosom... 40 6.0
70emb|AL929443.4| Mouse DNA sequence from clone RP23-467A7 on chro... 40 6.0 
>ref|NM_005180.5| Homo sapiens B lymphoma Mo-MLV insertion region (mouse) (BMI1),
           mRNA
          Length = 3251

 Score = 46.1 bits (23), Expect = 0.097
 Identities = 38/43 (88%)
 Strand = Plus / Minus

                                                      
Query: 247 cctcctcctcctcctaatctgccgctgccgtctcctcccgctc 289
           |||||||||||||||  || ||||| |||| ||||||||||||
Sbjct: 199 cctcctcctcctcctcctcggccgccgccgcctcctcccgctc 157
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>emb|AL158211.29| Human DNA sequence from clone RP11-573G6 on chromosome 10 Contains a
             ribosomal protein L31 (RPL31) pseudogene, the BUP gene for
             BUP protein, the BMI1 gene for B lymphoma Mo-MLV insertion
             region (mouse) (MGC12685), the 5' end of the SPAG6 gene
             for sperm associated antigen 6 (pf16, MGC26276,
             Repro-SA-1,DKFZp434I153), the 5' end of a novel gene and
             seven CpG islands, complete sequence
          Length = 138094

 Score = 46.1 bits (23), Expect = 0.097
 Identities = 38/43 (88%)
 Strand = Plus / Minus

                                                        
Query: 247   cctcctcctcctcctaatctgccgctgccgtctcctcccgctc 289
             |||||||||||||||  || ||||| |||| ||||||||||||
Sbjct: 76416 cctcctcctcctcctcctcggccgccgccgcctcctcccgctc 76374
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>gb|BC011652.2| Homo sapiens polycomb group ring finger 4, mRNA (cDNA clone
           MGC:12685 IMAGE:4138748), complete cds
          Length = 3251

 Score = 46.1 bits (23), Expect = 0.097
 Identities = 38/43 (88%)
 Strand = Plus / Minus

                                                      
Query: 247 cctcctcctcctcctaatctgccgctgccgtctcctcccgctc 289
           |||||||||||||||  || ||||| |||| ||||||||||||
Sbjct: 199 cctcctcctcctcctcctcggccgccgccgcctcctcccgctc 157
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>gb|L13689.1|HUMBMI1X Human prot-oncogene (BMI-1) mRNA, complete cds
          Length = 3203

 Score = 46.1 bits (23), Expect = 0.097
 Identities = 38/43 (88%)
 Strand = Plus / Minus

                                                      
Query: 247 cctcctcctcctcctaatctgccgctgccgtctcctcccgctc 289
           |||||||||||||||  || ||||| |||| ||||||||||||
Sbjct: 173 cctcctcctcctcctcctcggccgccgccgcctcctcccgctc 131
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>gb|AC096039.7| Rattus norvegicus 4 BAC CH230-29I22 (Children's Hospital Oakland
             Research Institute) complete sequence
          Length = 224101

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 246   tcctcctcctcctcctaatct 266
             |||||||||||||||||||||
Sbjct: 81491 tcctcctcctcctcctaatct 81511
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>gb|CP000249.1| Frankia sp. CcI3, complete genome
          Length = 5433628

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 152     tatccaccccaaccagatcga 172
               |||||||||||||||||||||
Sbjct: 3303050 tatccaccccaaccagatcga 3303030
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>gb|DP000053.1| Oryctolagus cuniculus target 126 genomic scaffold
          Length = 470930

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 242   gagttcctcctcctcctccta 262
             |||||||||||||||||||||
Sbjct: 26193 gagttcctcctcctcctccta 26213
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>gb|AC158313.7| Mus musculus chromosome 8, clone RP23-246H16, complete sequence
          Length = 168864

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 241   cgagttcctcctcctcctcct 261
             |||||||||||||||||||||
Sbjct: 62721 cgagttcctcctcctcctcct 62701
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>gb|AC153881.4| Mus musculus 10 BAC RP23-257B9 (Roswell Park Cancer Institute (C57BL/6J
             Female) Mouse BAC Library) complete sequence
          Length = 208992

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 246   tcctcctcctcctcctaatct 266
             |||||||||||||||||||||
Sbjct: 90211 tcctcctcctcctcctaatct 90191
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>gb|AF135793.1|AF135793 Fundulus heteroclitus sister of P-glycoprotein (spgp) mRNA, partial
           cds
          Length = 3004

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 241 cgagttcctcctcctcctcct 261
           |||||||||||||||||||||
Sbjct: 538 cgagttcctcctcctcctcct 518
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>gb|AC116825.23| Mus musculus chromosome 8, clone RP24-367H14, complete sequence
          Length = 182808

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 245   ttcctcctcctcctcctaat 264
             ||||||||||||||||||||
Sbjct: 63490 ttcctcctcctcctcctaat 63509
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>ref|NM_118797.3| Arabidopsis thaliana unknown protein AT4G26630 transcript variant
            AT4G26630.1 mRNA, complete cds
          Length = 2786

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 245  ttcctcctcctcctcctaatctgc 268
            ||||||||||||||||| ||||||
Sbjct: 2390 ttcctcctcctcctcctcatctgc 2367
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>ref|NM_001036647.1| Arabidopsis thaliana unknown protein AT4G26630 transcript variant
            AT4G26630.2 mRNA, complete cds
          Length = 2731

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 245  ttcctcctcctcctcctaatctgc 268
            ||||||||||||||||| ||||||
Sbjct: 2316 ttcctcctcctcctcctcatctgc 2293
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>ref|NM_186089.2| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1687

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 246 tcctcctcctcctcctaatc 265
           ||||||||||||||||||||
Sbjct: 176 tcctcctcctcctcctaatc 157
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>ref|XM_506548.1| PREDICTED Oryza sativa (japonica cultivar-group), P0450A04.117 mRNA
          Length = 1949

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 246 tcctcctcctcctcctaatc 265
           ||||||||||||||||||||
Sbjct: 231 tcctcctcctcctcctaatc 212
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>gb|AC119288.4| Oryza sativa (japonica cultivar-group) chromosome 5 clone
             OSJNBa0017J22, complete sequence
          Length = 177153

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 242   gagttcctcctcctcctcct 261
             ||||||||||||||||||||
Sbjct: 75993 gagttcctcctcctcctcct 75974
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>gb|AY023232.1| Oryza sativa microsatellite MRG5557 containing (GGA)X8, genomic
           sequence
          Length = 224

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 242 gagttcctcctcctcctcct 261
           ||||||||||||||||||||
Sbjct: 128 gagttcctcctcctcctcct 109
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>gb|CP000143.1| Rhodobacter sphaeroides 2.4.1 chromosome 1, complete genome
          Length = 3188609

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 164    ccagatcgatcggcggcaccttct 187
              ||||||||| ||||||||||||||
Sbjct: 691680 ccagatcgaacggcggcaccttct 691657
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>gb|AC164703.3| Mus musculus BAC clone RP23-266K19 from chromosome 7, complete sequence
          Length = 238433

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 245    ttcctcctcctcctcctaat 264
              ||||||||||||||||||||
Sbjct: 232760 ttcctcctcctcctcctaat 232741
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>gb|AC137614.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone
             OSJNBa0034O12, complete sequence
          Length = 156263

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 242   gagttcctcctcctcctcct 261
             ||||||||||||||||||||
Sbjct: 12142 gagttcctcctcctcctcct 12123
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>gb|AY491681.1| Triticum monococcum DV92 BAC 109N23, complete sequence
          Length = 101101

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 246   tcctcctcctcctcctaatctgcc 269
             |||||||||||||||| |||||||
Sbjct: 17921 tcctcctcctcctcctcatctgcc 17898
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>gb|AC124508.5| Mus musculus BAC clone RP23-433B5 from chromosome 7, complete sequence
          Length = 188011

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 246   tcctcctcctcctcctaatc 265
             ||||||||||||||||||||
Sbjct: 56276 tcctcctcctcctcctaatc 56257
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>emb|CT009510.7| Mouse DNA sequence from clone RP23-47H16 on chromosome 14, complete
              sequence
          Length = 209623

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 242    gagttcctcctcctcctcct 261
              ||||||||||||||||||||
Sbjct: 176662 gagttcctcctcctcctcct 176681
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>ref|XM_801799.1| Trypanosoma cruzi strain CL Brener transcription elongation factor
            S-II (Tc00.1047053511115.40) partial mRNA
          Length = 1434

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 331  tccgctgatctcgtctgctg 350
            ||||||||||||||||||||
Sbjct: 1373 tccgctgatctcgtctgctg 1354
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>ref|XM_807630.1| Trypanosoma cruzi strain CL Brener transcription elongation
            factor-like protein (Tc00.1047053507715.30) partial mRNA
          Length = 1434

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 331  tccgctgatctcgtctgctg 350
            ||||||||||||||||||||
Sbjct: 1373 tccgctgatctcgtctgctg 1354
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>gb|AC129544.7| Mus musculus chromosome 12, clone RP23-258H6, complete sequence
          Length = 232275

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 242    gagttcctcctcctcctcct 261
              ||||||||||||||||||||
Sbjct: 204832 gagttcctcctcctcctcct 204813
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>gb|AC152752.18| Medicago truncatula clone mth2-89c9, complete sequence
          Length = 117577

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 246    tcctcctcctcctcctaatc 265
              ||||||||||||||||||||
Sbjct: 117117 tcctcctcctcctcctaatc 117136
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>gb|AC104276.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1231_F08,
             complete sequence
          Length = 118049

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 242   gagttcctcctcctcctcct 261
             ||||||||||||||||||||
Sbjct: 13793 gagttcctcctcctcctcct 13774
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>gb|AC116842.6| Mus musculus, clone RP24-390P7, complete sequence
          Length = 132907

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 242   gagttcctcctcctcctcct 261
             ||||||||||||||||||||
Sbjct: 80338 gagttcctcctcctcctcct 80319
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>gb|AC095390.9| Rattus norvegicus 12 BAC CH230-7C24 (Children's Hospital Oakland Research
              Institute) complete sequence
          Length = 226532

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 245    ttcctcctcctcctcctaat 264
              ||||||||||||||||||||
Sbjct: 127515 ttcctcctcctcctcctaat 127496
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>emb|AL137162.25| Human DNA sequence from clone RP5-843L14 on chromosome 20 Contains a
             putative novel gene and the RPS4L gene for a pseudogene
             similar to part of X-linked ribosomal protein S4 (RPS4X),
             complete sequence
          Length = 57759

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 246   tcctcctcctcctcctaatc 265
             ||||||||||||||||||||
Sbjct: 29882 tcctcctcctcctcctaatc 29863
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>emb|AL031430.2|HS406M12 Human DNA sequence from clone RP3-406M12 on chromosome 1p34.1-34.3
              Contains a CpG island, complete sequence
          Length = 159281

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 246    tcctcctcctcctcctaatc 265
              ||||||||||||||||||||
Sbjct: 117294 tcctcctcctcctcctaatc 117313
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>gb|AC164299.2| Mus musculus BAC clone RP23-313K8 from chromosome 1, complete sequence
          Length = 160562

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 246    tcctcctcctcctcctaatc 265
              ||||||||||||||||||||
Sbjct: 110822 tcctcctcctcctcctaatc 110841
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>gb|AC157546.7| Mus musculus chromosome 19, clone RP23-325I11, complete sequence
          Length = 173513

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 245   ttcctcctcctcctcctaat 264
             ||||||||||||||||||||
Sbjct: 89807 ttcctcctcctcctcctaat 89788
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>emb|AL662843.11| Mouse DNA sequence from clone RP23-411E22 on chromosome 11 Contains the
             3' end of the Col23a1 gene for procollagen (type XXIII,
             alpha 1), the 5' end of a novel gene and a CpG island,
             complete sequence
          Length = 155917

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 246   tcctcctcctcctcctaatc 265
             ||||||||||||||||||||
Sbjct: 86045 tcctcctcctcctcctaatc 86064
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>emb|AL161565.2|ATCHRIV65 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 65
          Length = 198320

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 245    ttcctcctcctcctcctaatctgc 268
              ||||||||||||||||| ||||||
Sbjct: 128117 ttcctcctcctcctcctcatctgc 128140
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>emb|AL078465.1|ATT15N24 Arabidopsis thaliana DNA chromosome 4, BAC clone T15N24 (ESSA project)
          Length = 92657

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 245   ttcctcctcctcctcctaatctgc 268
             ||||||||||||||||| ||||||
Sbjct: 59985 ttcctcctcctcctcctcatctgc 60008
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>gb|BT008491.1| Arabidopsis thaliana At4g26630 gene, complete cds
          Length = 1209

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 245  ttcctcctcctcctcctaatctgc 268
            ||||||||||||||||| ||||||
Sbjct: 1140 ttcctcctcctcctcctcatctgc 1117
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>emb|AJ719537.1| Gallus gallus mRNA for hypothetical protein, clone 3c21
          Length = 1854

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 32/36 (88%)
 Strand = Plus / Minus

                                               
Query: 246 tcctcctcctcctcctaatctgccgctgccgtctcc 281
           |||||||||||||||| | | || ||||||||||||
Sbjct: 182 tcctcctcctcctcctcaccagctgctgccgtctcc 147
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>ref|NM_001006152.1| Gallus gallus protein phosphatase 2 (formerly 2A), catalytic
           subunit, alpha isoform (PPP2CA), mRNA
          Length = 1854

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 32/36 (88%)
 Strand = Plus / Minus

                                               
Query: 246 tcctcctcctcctcctaatctgccgctgccgtctcc 281
           |||||||||||||||| | | || ||||||||||||
Sbjct: 182 tcctcctcctcctcctcaccagctgctgccgtctcc 147
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>gb|AC010660.6| Drosophila melanogaster 3L BAC RP98-9I16 (Roswell Park Cancer Institute
              Drosophila BAC Library) complete sequence
          Length = 186795

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 246    tcctcctcctcctcctaatc 265
              ||||||||||||||||||||
Sbjct: 112293 tcctcctcctcctcctaatc 112312
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>tpg|BK002178.1| TPA: TPA_inf: Drosophila melanogaster HDC10482 (HDC10482) gene,
           complete cds
          Length = 808

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 246 tcctcctcctcctcctaatc 265
           ||||||||||||||||||||
Sbjct: 34  tcctcctcctcctcctaatc 53
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>gb|AC079262.28| Homo sapiens 12 BAC RP11-560H17 (Roswell Park Cancer Institute Human
             BAC Library) complete sequence
          Length = 208686

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 242   gagttcctcctcctcctcct 261
             ||||||||||||||||||||
Sbjct: 97161 gagttcctcctcctcctcct 97142
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>gb|AY093124.1| Arabidopsis thaliana putative protein (At4g26630) mRNA, complete cds
          Length = 1879

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 245  ttcctcctcctcctcctaatctgc 268
            ||||||||||||||||| ||||||
Sbjct: 1506 ttcctcctcctcctcctcatctgc 1483
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>gb|AC079317.25| Homo sapiens 12 BAC RP11-4K23 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 147862

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 242   gagttcctcctcctcctcct 261
             ||||||||||||||||||||
Sbjct: 86535 gagttcctcctcctcctcct 86516
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>gb|AF139373.2| Mus musculus calpain small subunit gene, exons 3 through 11 and
            partial cds; and cox7ah gene, exons 1 through 4 and
            complete cds
          Length = 9607

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 245  ttcctcctcctcctcctaat 264
            ||||||||||||||||||||
Sbjct: 5646 ttcctcctcctcctcctaat 5665
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>gb|AC020556.7| Homo sapiens BAC clone RP11-507B10 from 4, complete sequence
          Length = 186092

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 35/40 (87%)
 Strand = Plus / Plus

                                                     
Query: 245   ttcctcctcctcctcctaatctgccgctgccgtctcctcc 284
             |||||||||||||||||  |||||||| |||  |||||||
Sbjct: 85953 ttcctcctcctcctcctcctctgccgccgcctcctcctcc 85992
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>ref|XM_628287.1| Cryptosporidium parvum Iowa II hypothetical protein (cgd7_1010),
            partial mRNA
          Length = 17499

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 246  tcctcctcctcctcctaatc 265
            ||||||||||||||||||||
Sbjct: 4491 tcctcctcctcctcctaatc 4472
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>gb|AC159880.2| Mus musculus BAC clone RP24-490L14 from chromosome 9, complete sequence
          Length = 142451

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 246   tcctcctcctcctcctaatc 265
             ||||||||||||||||||||
Sbjct: 58071 tcctcctcctcctcctaatc 58090
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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 246      tcctcctcctcctcctaatc 265
                ||||||||||||||||||||
Sbjct: 28119870 tcctcctcctcctcctaatc 28119851



 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 242     gagttcctcctcctcctcct 261
               ||||||||||||||||||||
Sbjct: 5128215 gagttcctcctcctcctcct 5128234
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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
               sequence
          Length = 29737217

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 242     gagttcctcctcctcctcct 261
               ||||||||||||||||||||
Sbjct: 3446511 gagttcctcctcctcctcct 3446492
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>gb|AC019106.3| Homo sapiens BAC clone RP11-479L11 from 2, complete sequence
          Length = 198540

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 390   cttttgctggctactccaattttt 413
             |||||||||||||||| |||||||
Sbjct: 68852 cttttgctggctactcaaattttt 68829
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>ref|XM_218939.3| PREDICTED: Rattus norvegicus hepatitis B virus x associated protein
            (predicted) (Hbxap_predicted), mRNA
          Length = 5158

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 245  ttcctcctcctcctcctaatctgc 268
            ||||||||||||||||| ||||||
Sbjct: 4020 ttcctcctcctcctcctcatctgc 3997
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>dbj|AP004274.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
              clone:P0450A04
          Length = 162545

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 246    tcctcctcctcctcctaatc 265
              ||||||||||||||||||||
Sbjct: 103166 tcctcctcctcctcctaatc 103147
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>dbj|AP003743.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:OJ1118_E12
          Length = 119691

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 242   gagttcctcctcctcctcct 261
             ||||||||||||||||||||
Sbjct: 84382 gagttcctcctcctcctcct 84401
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>dbj|AK071159.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023078O15, full
           insert sequence
          Length = 1687

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 246 tcctcctcctcctcctaatc 265
           ||||||||||||||||||||
Sbjct: 176 tcctcctcctcctcctaatc 157
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>emb|AL359792.3|CNS05TF1 Human chromosome 14 DNA sequence BAC R-794A8 of library RPCI-11 from
             chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 180353

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 244   gttcctcctcctcctcctaatctg 267
             ||||| ||||||||||||||||||
Sbjct: 49656 gttccccctcctcctcctaatctg 49679
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>gb|AC155260.2| Mus musculus BAC clone RP24-71G3 from 12, complete sequence
          Length = 190003

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 242    gagttcctcctcctcctcct 261
              ||||||||||||||||||||
Sbjct: 110458 gagttcctcctcctcctcct 110477
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>dbj|AK060587.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-024-B07, full
           insert sequence
          Length = 1948

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 246 tcctcctcctcctcctaatc 265
           ||||||||||||||||||||
Sbjct: 231 tcctcctcctcctcctaatc 212
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>gb|AC004811.2|AC004811 Homo sapiens clone 162B15, complete sequence
          Length = 62836

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 242   gagttcctcctcctcctcct 261
             ||||||||||||||||||||
Sbjct: 12132 gagttcctcctcctcctcct 12113
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>gb|AE003527.3| Drosophila melanogaster chromosome 3L, section 58 of 83 of the complete
             sequence
          Length = 279904

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 246   tcctcctcctcctcctaatc 265
             ||||||||||||||||||||
Sbjct: 56917 tcctcctcctcctcctaatc 56936
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>gb|AC115835.6| Mus musculus chromosome 3, clone RP24-184C18, complete sequence
          Length = 172025

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 246    tcctcctcctcctcctaatctgcc 269
              ||||||||||||||||| ||||||
Sbjct: 105982 tcctcctcctcctcctagtctgcc 106005
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>emb|AL807747.10| Mouse DNA sequence from clone RP23-300N21 on chromosome 4, complete
             sequence
          Length = 228003

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 243   agttcctcctcctcctccta 262
             ||||||||||||||||||||
Sbjct: 75327 agttcctcctcctcctccta 75308
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>emb|AL845271.10| Mouse DNA sequence from clone RP23-119O19 on chromosome 2, complete
             sequence
          Length = 136949

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 246   tcctcctcctcctcctaatc 265
             ||||||||||||||||||||
Sbjct: 22002 tcctcctcctcctcctaatc 22021
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>gb|AC140213.2| Mus musculus BAC clone RP23-270L5 from 7, complete sequence
          Length = 195922

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 243   agttcctcctcctcctccta 262
             ||||||||||||||||||||
Sbjct: 17759 agttcctcctcctcctccta 17778
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>gb|AC134987.5| Mus musculus BAC clone RP23-117E24 from 14, complete sequence
          Length = 196751

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 242   gagttcctcctcctcctcct 261
             ||||||||||||||||||||
Sbjct: 33188 gagttcctcctcctcctcct 33207
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>emb|CT025619.9| Mouse DNA sequence from clone RP23-442M18 on chromosome 9, complete
             sequence
          Length = 193329

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 246   tcctcctcctcctcctaatc 265
             ||||||||||||||||||||
Sbjct: 82652 tcctcctcctcctcctaatc 82671
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>dbj|AB216749.1| Equus caballus DNA, microsatellite TKY2806
          Length = 498

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 246 tcctcctcctcctcctaatc 265
           ||||||||||||||||||||
Sbjct: 282 tcctcctcctcctcctaatc 263
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>gb|AC138622.4| Mus musculus BAC clone RP23-100J15 from chromosome 6, complete sequence
          Length = 194611

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 246   tcctcctcctcctcctaatc 265
             ||||||||||||||||||||
Sbjct: 10030 tcctcctcctcctcctaatc 10049
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>emb|AL929443.4| Mouse DNA sequence from clone RP23-467A7 on chromosome 2, complete
             sequence
          Length = 189821

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 245   ttcctcctcctcctcctaat 264
             ||||||||||||||||||||
Sbjct: 58172 ttcctcctcctcctcctaat 58153


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,751,501
Number of Sequences: 3902068
Number of extensions: 3751501
Number of successful extensions: 483218
Number of sequences better than 10.0: 70
Number of HSP's better than 10.0 without gapping: 71
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 481815
Number of HSP's gapped (non-prelim): 1387
length of query: 446
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 424
effective length of database: 17,147,199,772
effective search space: 7270412703328
effective search space used: 7270412703328
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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