ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl08b01 |
|---|---|
| Clone Library Name | barley_pub |
>SND1_BRARE (Q7ZT42) Staphylococcal nuclease domain-containing protein 1 (p100| co-activator) (100 kDa coactivator) (4SNc-Tudor domain protein) Length = 897 Score = 88.2 bits (217), Expect = 1e-17 Identities = 56/137 (40%), Positives = 76/137 (55%), Gaps = 13/137 (9%) Frame = +2 Query: 137 IMASNTGASGWLRGKVKAVTSGDCLLIMGSTKAEIPPEKSITLSYLMAPRLARRG----- 301 + +S A RG VK V SG +++ G + PPE+ I LS + A LARR Sbjct: 9 VQSSQASAPQLQRGIVKMVLSGCAIIVRGQPRGGPPPERQINLSNIRAGALARRAIQGQP 68 Query: 302 ----GVDEPFAWESREFLRKLCVGKEVTFRVDYTAPNIGREFGTVYLG----DKNVAYLV 457 DEP+A+++REF+RK +GKEV F V+ P GRE+G VYLG +N+A + Sbjct: 69 DTKDTPDEPWAFQAREFMRKKVIGKEVCFTVENKTPQ-GREYGMVYLGKDTSGENIAESL 127 Query: 458 VAAGWARVKGAGPRGVN 508 VA G A V+ G RG N Sbjct: 128 VAEGLAMVRREGIRGNN 144 Score = 44.7 bits (104), Expect = 1e-04 Identities = 40/123 (32%), Positives = 56/123 (45%), Gaps = 22/123 (17%) Frame = +2 Query: 179 KVKAVTSGDCLLIMGSTKAEIPPEKSITLSYLMAPRLAR-----------RGGVDEPFAW 325 KV V + D +++ K K+I LS + PRL R D P+ + Sbjct: 347 KVMQVVNADAIVV----KLNSGEYKTIHLSSIRPPRLEGEEKNKDKDKRFRPLYDIPYMF 402 Query: 326 ESREFLRKLCVGKEVTFRVDY-----TAPNIG------REFGTVYLGDKNVAYLVVAAGW 472 E+REFLRK +GK+V VDY A +G R TV +G N+A +V+ G Sbjct: 403 EAREFLRKKLIGKKVNVTVDYIRAATNAMEMGVPAFPERTCATVTIGGINIAEALVSKGL 462 Query: 473 ARV 481 A V Sbjct: 463 ATV 465
>SND1_BOVIN (Q863B3) Staphylococcal nuclease domain-containing protein 1 (p100| co-activator) (100 kDa coactivator) Length = 910 Score = 81.3 bits (199), Expect = 1e-15 Identities = 49/114 (42%), Positives = 66/114 (57%), Gaps = 13/114 (11%) Frame = +2 Query: 173 RGKVKAVTSGDCLLIMGSTKAEIPPEKSITLSYLMAPRLARRGGV---------DEPFAW 325 RG VK V SG +++ G + PPE+ I LS + A LARR V DEP+A+ Sbjct: 21 RGIVKMVLSGCAIIVRGQPRGGPPPERQINLSNIRAGNLARRAAVAQPDAKDTPDEPWAF 80 Query: 326 ESREFLRKLCVGKEVTFRVDYTAPNIGREFGTVYLG----DKNVAYLVVAAGWA 475 +REFLRK +GKEV F ++ P GRE+G +YLG +N+A +VA G A Sbjct: 81 PAREFLRKKLIGKEVCFTIENKTPQ-GREYGMIYLGKDTNGENIAESLVAEGLA 133 Score = 46.2 bits (108), Expect = 5e-05 Identities = 38/121 (31%), Positives = 54/121 (44%), Gaps = 20/121 (16%) Frame = +2 Query: 179 KVKAVTSGDCLLIMGSTKAEIPPEKSITLSYLMAPRLARRGGVDE----------PFAWE 328 KV V + D +++ K K+I LS + PRL D+ P+ +E Sbjct: 346 KVMQVLNADAIVV----KLNSGDYKTIHLSSIRPPRLEGENTQDKNKKLRPLYDIPYMFE 401 Query: 329 SREFLRKLCVGKEVTFRVDYTAPN----------IGREFGTVYLGDKNVAYLVVAAGWAR 478 +REFLRK +GK+V VDY P R TV +G N+A +V+ G A Sbjct: 402 AREFLRKKLIGKKVNVTVDYIRPASPATDTVPAFSERTCATVTIGGINIAEALVSKGLAT 461 Query: 479 V 481 V Sbjct: 462 V 462
>SND1_MOUSE (Q78PY7) Staphylococcal nuclease domain-containing protein 1 (p100| co-activator) (100 kDa coactivator) Length = 910 Score = 80.9 bits (198), Expect = 2e-15 Identities = 53/133 (39%), Positives = 73/133 (54%), Gaps = 19/133 (14%) Frame = +2 Query: 134 AIMASNTGASGW------LRGKVKAVTSGDCLLIMGSTKAEIPPEKSITLSYLMAPRLAR 295 A A ++G+SG RG VK V SG +++ G + PPE+ I LS + A LAR Sbjct: 2 ASSAQSSGSSGGPAVPTVQRGIVKMVLSGCAIIVRGQPRGGPPPERQINLSNIRAGNLAR 61 Query: 296 RGGV---------DEPFAWESREFLRKLCVGKEVTFRVDYTAPNIGREFGTVYLG----D 436 R DEP+A+ +REFLRK +GKEV F ++ P GRE+G +YLG Sbjct: 62 RAAATQPDGKDTPDEPWAFPAREFLRKKLIGKEVCFTIENKTPQ-GREYGMIYLGKDTNG 120 Query: 437 KNVAYLVVAAGWA 475 +N+A +VA G A Sbjct: 121 ENIAESLVAEGLA 133 Score = 45.4 bits (106), Expect = 9e-05 Identities = 39/121 (32%), Positives = 54/121 (44%), Gaps = 20/121 (16%) Frame = +2 Query: 179 KVKAVTSGDCLLIMGSTKAEIPPEKSITLSYLMAPRLAR----------RGGVDEPFAWE 328 KV V + D +++ K K+I LS + PRL R D P+ +E Sbjct: 346 KVMQVLNADAIVV----KLNSGDYKTIHLSSIRPPRLEGDNIQDKNKKLRPLYDIPYMFE 401 Query: 329 SREFLRKLCVGKEVTFRVDYTAPN----------IGREFGTVYLGDKNVAYLVVAAGWAR 478 +REFLRK +GK+V VDY P R TV +G N+A +V+ G A Sbjct: 402 AREFLRKKLIGKKVNVTVDYIRPASPATETVPAFSERTCATVTIGGINIAEALVSKGLAT 461 Query: 479 V 481 V Sbjct: 462 V 462
>SND1_RAT (Q66X93) Staphylococcal nuclease domain-containing protein 1 (p100| co-activator) (100 kDa coactivator) (SND p102) (p105 coactivator) Length = 909 Score = 80.5 bits (197), Expect = 2e-15 Identities = 52/130 (40%), Positives = 72/130 (55%), Gaps = 19/130 (14%) Frame = +2 Query: 143 ASNTGASGW------LRGKVKAVTSGDCLLIMGSTKAEIPPEKSITLSYLMAPRLARRGG 304 A ++G+SG RG VK V SG +++ G + PPE+ I LS + A LARR Sbjct: 4 AQSSGSSGGPAVPTVQRGIVKMVLSGCAIIVRGQPRGGPPPERQINLSNIRAGNLARRAA 63 Query: 305 V---------DEPFAWESREFLRKLCVGKEVTFRVDYTAPNIGREFGTVYLG----DKNV 445 DEP+A+ +REFLRK +GKEV F ++ P GRE+G +YLG +N+ Sbjct: 64 ATQPDGKDTPDEPWAFPAREFLRKKLIGKEVCFTIENKTPQ-GREYGMIYLGKDTNGENI 122 Query: 446 AYLVVAAGWA 475 A +VA G A Sbjct: 123 AESLVAEGLA 132 Score = 45.8 bits (107), Expect = 7e-05 Identities = 39/121 (32%), Positives = 55/121 (45%), Gaps = 20/121 (16%) Frame = +2 Query: 179 KVKAVTSGDCLLIMGSTKAEIPPEKSITLSYLMAPRLAR----------RGGVDEPFAWE 328 KV V + D +++ K K+I LS + PRL R D P+ +E Sbjct: 345 KVMQVLNADAIVV----KLNSGDYKTIHLSSIRPPRLEGDNIQDKNKKLRPLYDIPYMFE 400 Query: 329 SREFLRKLCVGKEVTFRVDYTAPN----------IGREFGTVYLGDKNVAYLVVAAGWAR 478 +REFLRK +GK+V+ VDY P R TV +G N+A +V+ G A Sbjct: 401 AREFLRKKLIGKKVSVTVDYIRPASPATETVPAFSERTCATVTIGGINIAEALVSKGLAT 460 Query: 479 V 481 V Sbjct: 461 V 461
>SND1_HUMAN (Q7KZF4) Staphylococcal nuclease domain-containing protein 1 (p100| co-activator) (100 kDa coactivator) (EBNA2 coactivator p100) Length = 910 Score = 79.3 bits (194), Expect = 5e-15 Identities = 47/114 (41%), Positives = 65/114 (57%), Gaps = 13/114 (11%) Frame = +2 Query: 173 RGKVKAVTSGDCLLIMGSTKAEIPPEKSITLSYLMAPRLARRGGV---------DEPFAW 325 RG +K V SG +++ G + PPE+ I LS + A LARR DEP+A+ Sbjct: 21 RGIIKMVLSGCAIIVRGQPRGGPPPERQINLSNIRAGNLARRAAATQPDAKDTPDEPWAF 80 Query: 326 ESREFLRKLCVGKEVTFRVDYTAPNIGREFGTVYLG----DKNVAYLVVAAGWA 475 +REFLRK +GKEV F ++ P GRE+G +YLG +N+A +VA G A Sbjct: 81 PAREFLRKKLIGKEVCFTIENKTPQ-GREYGMIYLGKDTNGENIAESLVAEGLA 133 Score = 46.2 bits (108), Expect = 5e-05 Identities = 38/121 (31%), Positives = 54/121 (44%), Gaps = 20/121 (16%) Frame = +2 Query: 179 KVKAVTSGDCLLIMGSTKAEIPPEKSITLSYLMAPRLARRGGVDE----------PFAWE 328 KV V + D +++ K K+I LS + PRL D+ P+ +E Sbjct: 346 KVMQVLNADAIVV----KLNSGDYKTIHLSSIRPPRLEGENTQDKNKKLRPLYDIPYMFE 401 Query: 329 SREFLRKLCVGKEVTFRVDYTAPN----------IGREFGTVYLGDKNVAYLVVAAGWAR 478 +REFLRK +GK+V VDY P R TV +G N+A +V+ G A Sbjct: 402 AREFLRKKLIGKKVNVTVDYIRPASPATETVPAFSERTCATVTIGGINIAEALVSKGLAT 461 Query: 479 V 481 V Sbjct: 462 V 462
>GBLP_HYDAT (Q25189) Guanine nucleotide-binding protein beta subunit-like| protein (Receptor of activated protein kinase C) (RACK) Length = 317 Score = 32.3 bits (72), Expect = 0.77 Identities = 15/37 (40%), Positives = 23/37 (62%), Gaps = 2/37 (5%) Frame = +3 Query: 366 RSHSEWITQLLTSGEN--LALSTSATRTLPTWWLLQD 470 + H+ W+TQ+ T+ +N L LS S +TL W L +D Sbjct: 11 KGHNGWVTQIATTPQNPDLILSASRDKTLIQWQLTRD 47
>VG20_BPT4 (P13334) Structural protein of head (Tail tube protein Gp20)| Length = 524 Score = 32.3 bits (72), Expect = 0.77 Identities = 13/47 (27%), Positives = 27/47 (57%) Frame = -1 Query: 442 VLVAEVDSAKFSPDVRSCVIHSECDLLSYAKFPQKLPAFPSKWLIDS 302 V+ +D +KFSP +++ ++ D+L++ F +K +W +DS Sbjct: 108 VVALNLDKSKFSPKIKNMMLDEFSDVLNHLSFQRKGSDHFRRWYVDS 154
>YFI3_ECO57 (Q7BSX4) Putative endonuclease precursor (EC 3.1.-.-)| Length = 153 Score = 32.0 bits (71), Expect = 1.0 Identities = 34/105 (32%), Positives = 45/105 (42%), Gaps = 1/105 (0%) Frame = +2 Query: 170 LRGKVKAVTSGDCLLIMGSTKAEIPPEKSITLSYLMAPRLARRGGVDEPFAWESREFLRK 349 + G+V V GD + +M S KA I L + AP + G W S + ++ Sbjct: 21 IHGRVVRVLDGDTIEVMDSRKA-----VRIRLVNIDAPEKKQDYG-----RW-STDMMKS 69 Query: 350 LCVGKEVTFRVDYTAPNIGREFGTVYLGD-KNVAYLVVAAGWARV 481 L GK VT + GR G VY D NV +V AG A V Sbjct: 70 LVAGKTVTVTY-FQRDRYGRMLGQVYAPDGMNVNQFMVRAGAAWV 113
>YFI3_ECOLI (Q99342) Putative endonuclease precursor (EC 3.1.-.-) (ORFA)| Length = 153 Score = 31.6 bits (70), Expect = 1.3 Identities = 34/105 (32%), Positives = 45/105 (42%), Gaps = 1/105 (0%) Frame = +2 Query: 170 LRGKVKAVTSGDCLLIMGSTKAEIPPEKSITLSYLMAPRLARRGGVDEPFAWESREFLRK 349 + G+V V GD + +M S KA I L + AP + G W S + ++ Sbjct: 21 IHGRVVRVLDGDTIEVMDSRKA-----VRIRLVNIDAPEKKQDYG-----RW-STDMMKS 69 Query: 350 LCVGKEVTFRVDYTAPNIGREFGTVYLGD-KNVAYLVVAAGWARV 481 L GK VT + GR G VY D NV +V AG A V Sbjct: 70 LVAGKTVTVTY-FQRDRYGRILGQVYAPDGMNVNQFMVRAGAAWV 113
>CARX_BACSU (P36838) Carbamoyl-phosphate synthase arginine-specific small chain| (EC 6.3.5.5) (Carbamoyl-phosphate synthetase glutamine chain) Length = 353 Score = 30.8 bits (68), Expect = 2.2 Identities = 15/52 (28%), Positives = 24/52 (46%) Frame = -1 Query: 451 VGNVLVAEVDSAKFSPDVRSCVIHSECDLLSYAKFPQKLPAFPSKWLIDSTT 296 +GN + E D P V++ V++ CD S+ + L + KW I T Sbjct: 57 IGNYGINEKDFESKKPQVKAAVVYEACDHFSHYEAVYSLKEYLQKWNIPLLT 108
>MBD6_HUMAN (Q96DN6) Methyl-CpG-binding domain protein 6 (Methyl-CpG-binding| protein MBD6) Length = 1003 Score = 30.0 bits (66), Expect = 3.8 Identities = 46/163 (28%), Positives = 62/163 (38%), Gaps = 3/163 (1%) Frame = -2 Query: 501 PLGPAPFTLAHPAATTK*ATFLSPR*TVPNSRPM-LGAV*STLNVTSFPTQSFLRNSLLS 325 PL P+ AHP ++ P + P+ LG + V FL +SLLS Sbjct: 271 PLPPSNNLPAHPGPASQ-----PPVSSATMHLPLVLGPLGGAPTVEGPGAPPFLASSLLS 325 Query: 324 QANGSSTPPRRA-SLGAIRYDRVMDFSGGISALVLPMMRRQSPEVTAFTLPLSH-PEAPV 151 A + PP S R R S S+ + P RR T F L P+ P Sbjct: 326 AAAKAQHPPLPPPSTLQGRRPRAQAPSASHSSSLRPSQRRPRRPPTVFRLLEGRGPQTPR 385 Query: 150 FDAMIAPWDWPAASGLRLPIRDPGEGVWPAG*SLLSRPDPDPN 22 AP P LP +P + + P+ SLL P P P+ Sbjct: 386 RSRPRAPA--PVPQPFSLP--EPSQPILPSVLSLLGLPTPGPS 424
>Y38K_CORSE (Q39635) Hypothetical 38.1 kDa protein| Length = 338 Score = 30.0 bits (66), Expect = 3.8 Identities = 18/54 (33%), Positives = 27/54 (50%) Frame = +2 Query: 314 PFAWESREFLRKLCVGKEVTFRVDYTAPNIGREFGTVYLGDKNVAYLVVAAGWA 475 PF E++E L KL VGK +T + Y GR G +Y + + ++ G A Sbjct: 240 PFGKEAKEELIKLVVGKCLTVHI-YEEDRYGRSVGDIYCNGQFIQEKMLKKGLA 292
>GBLP_BRARE (O42248) Guanine nucleotide-binding protein beta subunit 2-like 1| (Receptor of activated protein kinase C) (RACK) Length = 317 Score = 29.6 bits (65), Expect = 5.0 Identities = 13/37 (35%), Positives = 23/37 (62%), Gaps = 2/37 (5%) Frame = +3 Query: 366 RSHSEWITQLLTSGE--NLALSTSATRTLPTWWLLQD 470 + HS W+TQ+ T+ + ++ LS S +T+ W L +D Sbjct: 12 KGHSGWVTQIATTPQFPDMILSASRDKTIIMWKLTRD 48
>HISX_BRAJA (P59397) Histidinol dehydrogenase (EC 1.1.1.23) (HDH)| Length = 431 Score = 29.6 bits (65), Expect = 5.0 Identities = 18/65 (27%), Positives = 30/65 (46%), Gaps = 4/65 (6%) Frame = +2 Query: 110 LAAGQSQGAIMASNTGASGWLRGKVKAV----TSGDCLLIMGSTKAEIPPEKSITLSYLM 277 + AG S+ ++A +TG + W+ + A TS +LI S + EK++ Sbjct: 232 MIAGPSEVLVIADDTGNADWIAADLLAQAEHDTSAQSILITDSARLAADVEKAVEAQLKT 291 Query: 278 APRLA 292 PR A Sbjct: 292 LPRTA 296
>GBLP_TOBAC (P49026) Guanine nucleotide-binding protein beta subunit-like| protein Length = 326 Score = 29.3 bits (64), Expect = 6.5 Identities = 10/38 (26%), Positives = 26/38 (68%), Gaps = 2/38 (5%) Frame = +3 Query: 366 RSHSEWITQLLTSGEN--LALSTSATRTLPTWWLLQDG 473 R+H++W+T + T+ +N + +++S +++ W + +DG Sbjct: 13 RAHTDWVTAIATAVDNSDMIVTSSRDKSIIVWSITKDG 50
>GBLP_NICPL (P93340) Guanine nucleotide-binding protein beta subunit-like| protein Length = 326 Score = 29.3 bits (64), Expect = 6.5 Identities = 11/38 (28%), Positives = 25/38 (65%), Gaps = 2/38 (5%) Frame = +3 Query: 366 RSHSEWITQLLTSGEN--LALSTSATRTLPTWWLLQDG 473 R+H++W+T + T +N + +++S +++ W L +DG Sbjct: 13 RAHTDWVTAIATPVDNSDMIVTSSRDKSIIVWSLTKDG 50
>MTFA_MANSM (Q65U59) Putative RNA 2'-O-ribose methyltransferase mtfA (EC| 2.1.1.-) Length = 363 Score = 29.3 bits (64), Expect = 6.5 Identities = 16/55 (29%), Positives = 26/55 (47%) Frame = -1 Query: 469 SCSNHQVGNVLVAEVDSAKFSPDVRSCVIHSECDLLSYAKFPQKLPAFPSKWLID 305 + S H G + D KF P RS + CD++ P ++ A +KWL++ Sbjct: 251 AASLHDTGRIDHCPEDGFKFQPPKRSKIDWLVCDMVEQ---PIRIAALIAKWLVN 302
>HCN4_RABIT (Q9TV66) Potassium/sodium hyperpolarization-activated cyclic| nucleotide-gated channel 4 (Hyperpolarization-activated cation channel 4) (HAC-4) Length = 1175 Score = 28.9 bits (63), Expect = 8.5 Identities = 16/40 (40%), Positives = 21/40 (52%), Gaps = 2/40 (5%) Frame = +2 Query: 113 AAG--QSQGAIMASNTGASGWLRGKVKAVTSGDCLLIMGS 226 AAG +S+GA + G RG K+ T+GDC GS Sbjct: 66 AAGGAESRGAALGGAADGEGPARGAAKSSTNGDCRRFRGS 105 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 76,553,795 Number of Sequences: 219361 Number of extensions: 1676363 Number of successful extensions: 4867 Number of sequences better than 10.0: 18 Number of HSP's better than 10.0 without gapping: 4712 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4855 length of database: 80,573,946 effective HSP length: 104 effective length of database: 57,760,402 effective search space used: 3754426130 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
