>gb|AC164635.5| Mus musculus BAC clone RP23-65G17 from chromosome 16, complete sequence
          Length = 162255

 Score = 44.1 bits (22), Expect = 0.42
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 83    acggtgctggttcatttggtgc 104
             ||||||||||||||||||||||
Sbjct: 30712 acggtgctggttcatttggtgc 30691

>gb|AC122451.3| Mus musculus BAC clone RP24-252G15 from 16, complete sequence
          Length = 160256

 Score = 44.1 bits (22), Expect = 0.42
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 83    acggtgctggttcatttggtgc 104
             ||||||||||||||||||||||
Sbjct: 91257 acggtgctggttcatttggtgc 91236

>dbj|AK083771.1| Mus musculus 12 days embryo spinal ganglion cDNA, RIKEN full-length
            enriched library, clone:D130006K20
            product:unclassifiable, full insert sequence
          Length = 3152

 Score = 44.1 bits (22), Expect = 0.42
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                  
Query: 83   acggtgctggttcatttggtgc 104
            ||||||||||||||||||||||
Sbjct: 1744 acggtgctggttcatttggtgc 1765

>emb|AL355615.12| Human DNA sequence from clone RP11-33E24 on chromosome 6 Contains a
             ras-related C3 botulinum toxin substrate 3 (rho family,
             small GTP binding protein Rac3) pseudogene, two novel
             genes, a pseudogene similar to part of heat shock 90kD
             protein 1, beta (HSPCB) and a CpG island, complete
             sequence
          Length = 178362

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 168   gtattttgtttactagaataaaata 192
             ||||||||||||||| |||||||||
Sbjct: 78312 gtattttgtttactaaaataaaata 78288

>gb|AF244792.1| Oryza punctata isolate ICD40 gypsy-like retrotransposon
           integrase-like (int) gene, complete sequence
          Length = 292

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 186 taaaataatttctagccacca 206
           |||||||||||||||||||||
Sbjct: 176 taaaataatttctagccacca 156

>gb|AC134406.14| Mus musculus chromosome 9, clone RP24-349J23, complete sequence
          Length = 192663

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 400    agtagaacctatcctttgaggtca 423
              |||||||||||| |||||||||||
Sbjct: 112358 agtagaacctatgctttgaggtca 112335

>emb|CR457463.6| Zebrafish DNA sequence from clone DKEY-110G19 in linkage group 4,
             complete sequence
          Length = 145220

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 172   tttgtttactagaataaaataatt 195
             |||||||| |||||||||||||||
Sbjct: 97702 tttgtttattagaataaaataatt 97725

>gb|AC128702.4| Mus musculus BAC clone RP24-239M3 from chromosome 9, complete sequence
          Length = 159431

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 400    agtagaacctatcctttgaggtca 423
              |||||||||||| |||||||||||
Sbjct: 124423 agtagaacctatgctttgaggtca 124446

>gb|BC015596.2| Homo sapiens chromosome 21 open reading frame 51, mRNA (cDNA clone
           MGC:23362 IMAGE:4647871), complete cds
          Length = 839

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 168 gtattttgtttactagaataaaat 191
           ||||||||||||||| ||||||||
Sbjct: 790 gtattttgtttactaaaataaaat 813

>emb|AL365361.12| Human DNA sequence from clone RP11-284N8 on chromosome 1 Contains the
              KCNA2 gene for a potassium voltage-gated channel from the
              shaker-related subfamily member 2, the KCNA3 gene for a
              potassium voltage-gated channel from the shaker-related
              subfamily member 3 and two CpG islands, complete sequence
          Length = 193182

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 338    gggaaaggagaaatttcaaaaggg 361
              ||||||||||||| ||||||||||
Sbjct: 110391 gggaaaggagaaaattcaaaaggg 110414

>emb|CR847531.7| Zebrafish DNA sequence from clone CH211-145N14 in linkage group 21,
              complete sequence
          Length = 150363

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 271    aactctagcctgaacactga 290
              ||||||||||||||||||||
Sbjct: 115172 aactctagcctgaacactga 115153

>gb|AC144473.8| Medicago truncatula clone mth2-15l5, complete sequence
          Length = 128860

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 171   ttttgtttactagaataaaa 190
             ||||||||||||||||||||
Sbjct: 90565 ttttgtttactagaataaaa 90584

>gb|AC112916.3| Homo sapiens X BAC RP11-765I9 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 172457

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 180    ctagaataaaataatttcta 199
              ||||||||||||||||||||
Sbjct: 132273 ctagaataaaataatttcta 132292

>gb|CP000123.1| Mycoplasma capricolum subsp. capricolum ATCC 27343, complete genome
          Length = 1010023

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 168    gtattttgtttactagaata 187
              ||||||||||||||||||||
Sbjct: 844379 gtattttgtttactagaata 844360

>dbj|AK042044.1| Mus musculus 3 days neonate thymus cDNA, RIKEN full-length enriched
           library, clone:A630054E19 product:unclassifiable, full
           insert sequence
          Length = 2605

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 253 gagactcagaattatgcaaa 272
           ||||||||||||||||||||
Sbjct: 108 gagactcagaattatgcaaa 89

>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 181      tagaataaaataatttctag 200
                ||||||||||||||||||||
Sbjct: 28581596 tagaataaaataatttctag 28581615

>dbj|AP000052.1| Homo sapiens genomic DNA, chromosome 21q22.1, segment 23/28, complete
             sequence
          Length = 100000

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 168   gtattttgtttactagaataaaat 191
             ||||||||||||||| ||||||||
Sbjct: 98851 gtattttgtttactaaaataaaat 98874

>dbj|AP003817.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:OJ1167_G06
          Length = 112386

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 181   tagaataaaataatttctag 200
             ||||||||||||||||||||
Sbjct: 47554 tagaataaaataatttctag 47573

>dbj|AP004343.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
              clone:P0618H09
          Length = 142306

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 181    tagaataaaataatttctag 200
              ||||||||||||||||||||
Sbjct: 139137 tagaataaaataatttctag 139156

>dbj|BS000189.1| Pan troglodytes chromosome 22 clone:PTB-016G16, map 22, partial
             sequences, complete sequence
          Length = 57494

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 168   gtattttgtttactagaataaaat 191
             ||||||||||||||| ||||||||
Sbjct: 11591 gtattttgtttactaaaataaaat 11614

>dbj|AK057880.1| Homo sapiens cDNA FLJ25151 fis, clone CBR07718
          Length = 1074

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 168  gtattttgtttactagaataaaat 191
            ||||||||||||||| ||||||||
Sbjct: 1034 gtattttgtttactaaaataaaat 1057

>emb|CR936403.5| Zebrafish DNA sequence from clone CH211-4L14 in linkage group 18,
             complete sequence
          Length = 58411

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 271   aactctagcctgaacactga 290
             ||||||||||||||||||||
Sbjct: 10658 aactctagcctgaacactga 10677

>emb|BX908722.4| Zebrafish DNA sequence from clone CH211-165A16 in linkage group 18,
             complete sequence
          Length = 166917

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 271   aactctagcctgaacactga 290
             ||||||||||||||||||||
Sbjct: 62969 aactctagcctgaacactga 62950

>emb|AL844512.16| Zebrafish DNA sequence from clone DKEY-8M7, complete sequence
          Length = 231383

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 172   tttgtttactagaataaaataatt 195
             |||||||| |||||||||||||||
Sbjct: 52995 tttgtttattagaataaaataatt 53018

>emb|CT476800.3| RP43-013D05, complete sequence
          Length = 207013

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 180    ctagaataaaataatttcta 199
              ||||||||||||||||||||
Sbjct: 191837 ctagaataaaataatttcta 191856

>dbj|AP001719.1| Homo sapiens genomic DNA, chromosome 21q, section 63/105
          Length = 340000

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 168    gtattttgtttactagaataaaat 191
              ||||||||||||||| ||||||||
Sbjct: 320060 gtattttgtttactaaaataaaat 320083

>emb|CR450845.14| Zebrafish DNA sequence from clone DKEY-63K7 in linkage group 2, complete
              sequence
          Length = 232604

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 271    aactctagcctgaacactga 290
              ||||||||||||||||||||
Sbjct: 136845 aactctagcctgaacactga 136864

>dbj|AP000167.1| Homo sapiens genomic DNA, chromosome 21q22.1, D21S226-AML region, clone
             B2344F14-f50E8, segment 3/9, complete sequence
          Length = 100000

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 168   gtattttgtttactagaataaaat 191
             ||||||||||||||| ||||||||
Sbjct: 90819 gtattttgtttactaaaataaaat 90842

>dbj|AP000321.1| Homo sapiens genomic DNA, chromosome 21q22.1, D21S226-AML region,
             clone:Q82F5, complete sequence
          Length = 16145

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 168   gtattttgtttactagaataaaat 191
             ||||||||||||||| ||||||||
Sbjct: 10011 gtattttgtttactaaaataaaat 10034


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,239,755
Number of Sequences: 3902068
Number of extensions: 4239755
Number of successful extensions: 77920
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 77831
Number of HSP's gapped (non-prelim): 89
length of query: 482
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 460
effective length of database: 17,147,199,772
effective search space: 7887711895120
effective search space used: 7887711895120
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)