>PRG4_MOUSE (Q9JM99) Proteoglycan-4 precursor (Lubricin) (Megakaryocyte|
           stimulating factor) (Superficial zone proteoglycan)
           [Contains: Proteoglycan-4 C-terminal part]
          Length = 1054

 Score = 32.7 bits (73), Expect = 0.40
 Identities = 15/50 (30%), Positives = 25/50 (50%)
 Frame = +1

Query: 25  KPTHSPRNSQAHKNSEK*KSSRKIGVPNPLPRASRIPRIPTNPHEIFQPS 174
           KPT +P+   + K  +  K+ +    P+PL   S  P + T P E+  P+
Sbjct: 676 KPTKAPKKPTSTKKPKTPKTRKPKTTPSPLKTTSATPELNTTPLEVMLPT 725

>BLNK_HUMAN (Q8WV28) B-cell linker protein (Cytoplasmic adapter protein)|
           (B-cell adapter containing SH2 domain protein) (B-cell
           adapter containing Src homology 2 domain protein) (Src
           homology 2 domain-containing leukocyte protein of 65
           kDa) (SLP-65)
          Length = 456

 Score = 32.3 bits (72), Expect = 0.52
 Identities = 25/74 (33%), Positives = 33/74 (44%), Gaps = 5/74 (6%)
 Frame = +1

Query: 10  TSTPHKP--THSPRNSQAHKNSEK*KSSRKIGVPNPLPRASRIPRIPTNPHEIFQPSNAA 183
           +STP  P  T S RNS A +       S     P+PLPRA + P  P     +    NA+
Sbjct: 214 SSTPASPPGTASGRNSGAWETK-----SPPPAAPSPLPRAGKKPTTPLKTTPVASQQNAS 268

Query: 184 AF---RRFPDEAHR 216
           +    +  P E HR
Sbjct: 269 SVCEEKPIPAERHR 282

>B3A2_RABIT (P48746) Anion exchange protein 2 (Non-erythroid band 3-like|
           protein) (AE2 anion exchanger) (Solute carrier family 4
           member 2) (B3RP)
          Length = 1237

 Score = 31.2 bits (69), Expect = 1.2
 Identities = 18/50 (36%), Positives = 24/50 (48%)
 Frame = +1

Query: 79  KSSRKIGVPNPLPRASRIPRIPTNPHEIFQPSNAAAFRRFPDEAHREIQR 228
           +SSR+   P P PR+   PR P  PHE+F   N     +  +   RE  R
Sbjct: 294 QSSREGREPGPTPRSR--PRAPHKPHEVFVELNELLLDKNQEPQWRETAR 341

>B3A2_CAVPO (Q9Z0S8) Anion exchange protein 2 (Non-erythroid band 3-like|
           protein) (AE2 anion exchanger) (Solute carrier family 4
           member 2)
          Length = 1238

 Score = 30.8 bits (68), Expect = 1.5
 Identities = 18/50 (36%), Positives = 23/50 (46%)
 Frame = +1

Query: 79  KSSRKIGVPNPLPRASRIPRIPTNPHEIFQPSNAAAFRRFPDEAHREIQR 228
           +SSR+   P P PR    PR P  PHE+F   N     +  +   RE  R
Sbjct: 294 QSSREGREPGPTPRTR--PRAPHKPHEVFVELNELLLDKNQEPQWRETAR 341

>B3A2_HUMAN (P04920) Anion exchange protein 2 (Non-erythroid band 3-like|
           protein) (AE2 anion exchanger) (Solute carrier family 4
           member 2) (BND3L)
          Length = 1241

 Score = 30.8 bits (68), Expect = 1.5
 Identities = 18/50 (36%), Positives = 23/50 (46%)
 Frame = +1

Query: 79  KSSRKIGVPNPLPRASRIPRIPTNPHEIFQPSNAAAFRRFPDEAHREIQR 228
           +S R+   P P PRA   PR P  PHE+F   N     +  +   RE  R
Sbjct: 298 QSGREGREPGPTPRAR--PRAPHKPHEVFVELNELLLDKNQEPQWRETAR 345

>B3A2_MOUSE (P13808) Anion exchange protein 2 (Non-erythroid band 3-like|
           protein) (AE2 anion exchanger) (Solute carrier family 4
           member 2) (B3RP)
          Length = 1237

 Score = 30.0 bits (66), Expect = 2.6
 Identities = 17/50 (34%), Positives = 24/50 (48%)
 Frame = +1

Query: 79  KSSRKIGVPNPLPRASRIPRIPTNPHEIFQPSNAAAFRRFPDEAHREIQR 228
           +++R+   P P PRA   PR P  PHE+F   N     +  +   RE  R
Sbjct: 294 QAAREGREPGPTPRAR--PRAPHKPHEVFVELNELLLDKNQEPQWRETAR 341

>B3A2_RAT (P23347) Anion exchange protein 2 (Non-erythroid band 3-like|
           protein) (AE2 anion exchanger) (Solute carrier family 4
           member 2) (B3RP)
          Length = 1234

 Score = 30.0 bits (66), Expect = 2.6
 Identities = 17/50 (34%), Positives = 24/50 (48%)
 Frame = +1

Query: 79  KSSRKIGVPNPLPRASRIPRIPTNPHEIFQPSNAAAFRRFPDEAHREIQR 228
           +++R+   P P PRA   PR P  PHE+F   N     +  +   RE  R
Sbjct: 295 QAAREGREPGPTPRAR--PRAPHKPHEVFVELNELQLDKNQEPQWRETAR 342

>RNB_HHV1M (P56958) RNA-binding protein (Vmw21)|
          Length = 161

 Score = 28.9 bits (63), Expect = 5.8
 Identities = 16/49 (32%), Positives = 25/49 (51%)
 Frame = +1

Query: 25  KPTHSPRNSQAHKNSEK*KSSRKIGVPNPLPRASRIPRIPTNPHEIFQP 171
           +P   PR  +  +     +  R+   P  +PRASR PR+P +P +  QP
Sbjct: 80  RPPTIPRTPRVPREPRVPRPPREPREPR-VPRASRDPRVPRDPRDPRQP 127

>M3K4_HUMAN (Q9Y6R4) Mitogen-activated protein kinase kinase kinase 4 (EC|
            2.7.11.25) (MAPK/ERK kinase kinase 4) (MEK kinase 4)
            (MEKK 4) (MAP three kinase 1)
          Length = 1607

 Score = 28.9 bits (63), Expect = 5.8
 Identities = 17/59 (28%), Positives = 24/59 (40%), Gaps = 3/59 (5%)
 Frame = +1

Query: 115  PRASRIPRI---PTNPHEIFQPSNAAAFRRFPDEAHREIQRAVHRVVADSLVVRRGAPS 282
            PR  ++PR    P NPH I       + R  P +A      A     A ++   R +PS
Sbjct: 1149 PRPMKVPRCHSDPPNPHLIIPTPEGFSTRSMPSDARSHGSPAAAAAAAAAVAASRPSPS 1207

>FABH_GLOVI (Q7NF35) 3-oxoacyl-[acyl-carrier-protein] synthase 3 (EC 2.3.1.41)|
           (3-oxoacyl-[acyl-carrier-protein] synthase III)
           (Beta-ketoacyl-ACP synthase III) (KAS III)
          Length = 329

 Score = 28.9 bits (63), Expect = 5.8
 Identities = 22/88 (25%), Positives = 34/88 (38%), Gaps = 9/88 (10%)
 Frame = -1

Query: 386 IKRTAQGAKIAPLLPYSYRSHAAATQLIDQDAAARDGAPRR---------TTSESATTLC 234
           I++T     +AP    +Y  H A  +++D  A+    AP R          TS ++  L 
Sbjct: 233 IEKTLAACGVAPEQVKAYLLHQANQRILDSVASRLHVAPERMASNLADYGNTSSASVPLI 292

Query: 233 TARWISRWASSGNLRKAAALEGWKISWG 150
              W+         R   A  G  +SWG
Sbjct: 293 LQEWVQDGRIRAGDRVVLAGFGAGLSWG 320

>RAI1_MOUSE (Q61818) Retinoic acid-induced protein 1|
          Length = 1889

 Score = 28.9 bits (63), Expect = 5.8
 Identities = 13/46 (28%), Positives = 21/46 (45%)
 Frame = +1

Query: 1   PRRTSTPHKPTHSPRNSQAHKNSEK*KSSRKIGVPNPLPRASRIPR 138
           P RT + H P   P+   A+   ++ K    +  P P P+ S  P+
Sbjct: 159 PFRTHSLHVPPPQPQQPLAYPKLQRQKPQNDLASPLPFPQGSHFPQ 204

>SPF45_HUMAN (Q96I25) Splicing factor 45 (45 kDa splicing factor) (RNA-binding|
           motif protein 17)
          Length = 401

 Score = 28.5 bits (62), Expect = 7.6
 Identities = 16/52 (30%), Positives = 21/52 (40%)
 Frame = +1

Query: 10  TSTPHKPTHSPRNSQAHKNSEK*KSSRKIGVPNPLPRASRIPRIPTNPHEIF 165
           TS   K    PR+    ++S     S K  +P P+      PR PT P   F
Sbjct: 179 TSLVEKDKELPRDFPYEEDSRPRSQSSKAAIPPPVYEEQDRPRSPTGPSNSF 230

>SEM3F_HUMAN (Q13275) Semaphorin-3F precursor (Semaphorin IV) (Sema IV) (Sema|
           III/F)
          Length = 785

 Score = 28.1 bits (61), Expect = 9.9
 Identities = 21/57 (36%), Positives = 29/57 (50%), Gaps = 6/57 (10%)
 Frame = +1

Query: 133 PRIPTNPHEIFQPSNAAAFRRFPDE------AHREIQRAVHRVVADSLVVRRGAPSR 285
           PR  T P   F PS  +  + +PDE      +H  + +AV+ +    LVVR GAP R
Sbjct: 407 PRPGTCPGGTFTPSMKST-KDYPDEVINFMRSHPLMYQAVYPLQRRPLVVRTGAPYR 462

>SPF45_MOUSE (Q8JZX4) Splicing factor 45 (45 kDa splicing factor) (RNA-binding|
           motif protein 17)
          Length = 405

 Score = 28.1 bits (61), Expect = 9.9
 Identities = 16/52 (30%), Positives = 21/52 (40%)
 Frame = +1

Query: 10  TSTPHKPTHSPRNSQAHKNSEK*KSSRKIGVPNPLPRASRIPRIPTNPHEIF 165
           TS   K    PR+    ++S     S K  +P P+      PR PT P   F
Sbjct: 179 TSLVEKDKELPRDFPYEEDSRPRSQSSKAAIPPPVYEEPDRPRSPTGPSNSF 230


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 58,605,082
Number of Sequences: 219361
Number of extensions: 1060440
Number of successful extensions: 3769
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 3576
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3753
length of database: 80,573,946
effective HSP length: 101
effective length of database: 58,418,485
effective search space used: 2570413340
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)