Clone Name | bastl08a07 |
---|---|
Clone Library Name | barley_pub |
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 58.0 bits (29), Expect = 3e-05 Identities = 54/60 (90%), Gaps = 3/60 (5%) Strand = Plus / Plus Query: 4 agacgaacaagcacaccacacaaaccca-cacact--ccccacggaattcacaagcccac 60 ||||||||||||||| |||||||||||| ||||| |||||||||||||||||| |||| Sbjct: 22315395 agacgaacaagcacagcacacaaacccaggacacttcccccacggaattcacaagaccac 22315454 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Plus Query: 177 cgccgccgccttccgcagatttccc 201 |||||||||| |||||||||||||| Sbjct: 22315656 cgccgccgccctccgcagatttccc 22315680
>emb|AL606448.3|OSJN00013 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0064H22, complete sequence Length = 147214 Score = 58.0 bits (29), Expect = 3e-05 Identities = 54/60 (90%), Gaps = 3/60 (5%) Strand = Plus / Plus Query: 4 agacgaacaagcacaccacacaaaccca-cacact--ccccacggaattcacaagcccac 60 ||||||||||||||| |||||||||||| ||||| |||||||||||||||||| |||| Sbjct: 66299 agacgaacaagcacagcacacaaacccaggacacttcccccacggaattcacaagaccac 66358 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Plus Query: 177 cgccgccgccttccgcagatttccc 201 |||||||||| |||||||||||||| Sbjct: 66560 cgccgccgccctccgcagatttccc 66584
>emb|AL603664.16| Mouse DNA sequence from clone RP23-247J12 on chromosome 11, complete sequence Length = 158098 Score = 44.1 bits (22), Expect = 0.38 Identities = 22/22 (100%) Strand = Plus / Plus Query: 15 cacaccacacaaacccacacac 36 |||||||||||||||||||||| Sbjct: 55648 cacaccacacaaacccacacac 55669
>gb|AC125483.4| Mus musculus BAC clone RP23-109I9 from chromosome 1, complete sequence Length = 201732 Score = 42.1 bits (21), Expect = 1.5 Identities = 27/29 (93%) Strand = Plus / Plus Query: 10 acaagcacaccacacaaacccacacactc 38 |||| |||||||||||||| ||||||||| Sbjct: 194821 acaaacacaccacacaaacgcacacactc 194849
>gb|CP000352.1| Ralstonia metallidurans CH34, complete genome Length = 3928089 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 69 cgagaaatagaaatcctctcg 89 ||||||||||||||||||||| Sbjct: 666980 cgagaaatagaaatcctctcg 667000
>gb|AC124139.9| Mus musculus chromosome 1, clone RP24-78G8, complete sequence Length = 216124 Score = 42.1 bits (21), Expect = 1.5 Identities = 27/29 (93%) Strand = Plus / Minus Query: 10 acaagcacaccacacaaacccacacactc 38 |||| |||||||||||||| ||||||||| Sbjct: 185992 acaaacacaccacacaaacgcacacactc 185964
>dbj|AK068842.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013162C23, full insert sequence Length = 3754 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Plus Query: 177 cgccgccgccttccgcagatttccc 201 |||||||||| |||||||||||||| Sbjct: 213 cgccgccgccctccgcagatttccc 237
>emb|CR383671.20| Zebrafish DNA sequence from clone CH211-127B6 in linkage group 15, complete sequence Length = 132412 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 20 cacacaaacccacacactccc 40 ||||||||||||||||||||| Sbjct: 111764 cacacaaacccacacactccc 111784
>dbj|AB045011.1| Homo sapiens hmGluR2 gene for metabotropic glutamate receptor type 2, complete cds Length = 16436 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Plus Query: 19 ccacacaaacccacacactccccac 43 ||||||| ||||||||||||||||| Sbjct: 6177 ccacacacacccacacactccccac 6201
>gb|AC101882.14| Mus musculus chromosome 10, clone RP23-394M6, complete sequence Length = 209838 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 400 atgtgtgtctgagatagattgtct 423 ||||||||||||||| |||||||| Sbjct: 81669 atgtgtgtctgagattgattgtct 81646
>gb|AC175711.3| Pan troglodytes BAC clone CH251-100H6 from chromosome unknown, complete sequence Length = 169508 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 101 ttccaaatcccctcccaaga 120 |||||||||||||||||||| Sbjct: 13618 ttccaaatcccctcccaaga 13599
>emb|AL139384.17| Human DNA sequence from clone RP11-88E10 on chromosome 13q33.1-34 Contains the 5' end of the ATP11A gene for Class VI ATPase type IIA, a novel gene, the 5' end of the TUBGCP3 gene for tubulin gamma complex associated protein 3 and two CpG islands, complete sequence Length = 187157 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 101 ttccaaatcccctcccaaga 120 |||||||||||||||||||| Sbjct: 4499 ttccaaatcccctcccaaga 4518
>gb|CP000095.1| Prochlorococcus marinus str. NATL2A, complete genome Length = 1842899 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 71 agaaatagaaatcctctcgaaaaa 94 |||||||||||||||||| ||||| Sbjct: 908666 agaaatagaaatcctctcaaaaaa 908643
>emb|BX537103.6| Zebrafish DNA sequence from clone CH211-194E1 in linkage group 8, complete sequence Length = 187569 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 5 gacgaacaagcacaccacac 24 |||||||||||||||||||| Sbjct: 186670 gacgaacaagcacaccacac 186689
>emb|BX571955.15| Zebrafish DNA sequence from clone DKEY-27B3 in linkage group 10, complete sequence Length = 272498 Score = 40.1 bits (20), Expect = 5.9 Identities = 26/28 (92%) Strand = Plus / Minus Query: 15 cacaccacacaaacccacacactcccca 42 ||||||||||| ||||| |||||||||| Sbjct: 90796 cacaccacacacacccagacactcccca 90769
>dbj|AK057085.1| Homo sapiens cDNA FLJ32523 fis, clone SMINT2000032 Length = 2047 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 101 ttccaaatcccctcccaaga 120 |||||||||||||||||||| Sbjct: 1314 ttccaaatcccctcccaaga 1333
>dbj|AB224083.1| Aspergillus oryzae cDNA, contig sequence: AoEST0925 Length = 514 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 16 acaccacacaaacccacaca 35 |||||||||||||||||||| Sbjct: 8 acaccacacaaacccacaca 27
>dbj|AP007162.1| Aspergillus oryzae RIB40 genomic DNA, SC102 Length = 1779707 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 16 acaccacacaaacccacaca 35 |||||||||||||||||||| Sbjct: 1514174 acaccacacaaacccacaca 1514155
>ref|XM_693557.1| PREDICTED: Danio rerio similar to LIM-only protein 6 (Triple LIM domain protein 6) (LOC570116), mRNA Length = 2373 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 5 gacgaacaagcacaccacac 24 |||||||||||||||||||| Sbjct: 1838 gacgaacaagcacaccacac 1857
>gb|AC161617.4| Pan troglodytes BAC clone CH251-548L6 from chromosome unknown, complete sequence Length = 218767 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 101 ttccaaatcccctcccaaga 120 |||||||||||||||||||| Sbjct: 183091 ttccaaatcccctcccaaga 183110
>gb|AC130669.17| Mus musculus chromosome 15, clone RP24-84O5, complete sequence Length = 205231 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 13 agcacaccacacaaacccacacac 36 |||||||||||||||| ||||||| Sbjct: 141416 agcacaccacacaaacacacacac 141393
>emb|BX005348.9| Zebrafish DNA sequence from clone DKEY-245J21 in linkage group 11, complete sequence Length = 145299 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 13 agcacaccacacaaacccacacac 36 ||||||| |||||||||||||||| Sbjct: 84240 agcacacaacacaaacccacacac 84217
>gb|AF281817.1|AF281817 Tupaia herpesvirus strain 2, complete genome Length = 195859 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 214 cgagaaatccagcgcgccgt 233 |||||||||||||||||||| Sbjct: 140753 cgagaaatccagcgcgccgt 140734
>emb|BX323548.11| Zebrafish DNA sequence from clone DKEY-31D5 in linkage group 11, complete sequence Length = 229237 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 13 agcacaccacacaaacccacacac 36 ||||||| |||||||||||||||| Sbjct: 91157 agcacacaacacaaacccacacac 91134
>emb|BX548012.11| Zebrafish DNA sequence from clone DKEY-271O4 in linkage group 18, complete sequence Length = 154557 Score = 40.1 bits (20), Expect = 5.9 Identities = 26/28 (92%) Strand = Plus / Minus Query: 15 cacaccacacaaacccacacactcccca 42 ||||||||||| ||||| |||||||||| Sbjct: 87692 cacaccacacacacccagacactcccca 87665
>gb|AC093674.2| Homo sapiens BAC clone RP11-592G8 from 2, complete sequence Length = 93188 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 48 ttcacaagcccacaaaaatt 67 |||||||||||||||||||| Sbjct: 15492 ttcacaagcccacaaaaatt 15511
>emb|BX649600.8| Zebrafish DNA sequence from clone CH211-222M18 in linkage group 18, complete sequence Length = 228633 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 17 caccacacaaacccacacac 36 |||||||||||||||||||| Sbjct: 141179 caccacacaaacccacacac 141198
>gb|AC154138.11| Mus musculus 10 BAC RP23-124J6 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 179306 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 10 acaagcacaccacacaaacccaca 33 |||| ||||||||||||||||||| Sbjct: 49279 acaaccacaccacacaaacccaca 49302
>gb|AC155286.8| Mus musculus 10 BAC RP23-213N17 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 219072 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 400 atgtgtgtctgagatagattgtct 423 ||||||||||||||| |||||||| Sbjct: 584 atgtgtgtctgagattgattgtct 607
>gb|AC155642.6| Mus musculus 10 BAC RP24-117F24 (Roswell Park Cancer Institute (C57BL/6J Male) Mouse BAC Library) complete sequence Length = 195095 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 10 acaagcacaccacacaaacccaca 33 |||| ||||||||||||||||||| Sbjct: 112696 acaaccacaccacacaaacccaca 112719
>emb|CT030636.13| Mouse DNA sequence from clone RP23-432O2 on chromosome 17, complete sequence Length = 204320 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 102 tccaaatcccctcccaagag 121 |||||||||||||||||||| Sbjct: 140873 tccaaatcccctcccaagag 140892
>gb|AC116804.22| Mus musculus chromosome 17, clone RP24-343C24, complete sequence Length = 186153 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 102 tccaaatcccctcccaagag 121 |||||||||||||||||||| Sbjct: 166692 tccaaatcccctcccaagag 166711
>emb|AJ249895.1|MMU249895 Mus musculus mas proto-oncogene and Igf2r gene for insulin-like growth factor type 2 and L41ps and Au76 pseudogenes Length = 138490 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 102 tccaaatcccctcccaagag 121 |||||||||||||||||||| Sbjct: 106582 tccaaatcccctcccaagag 106563 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,788,347 Number of Sequences: 3902068 Number of extensions: 2788347 Number of successful extensions: 67712 Number of sequences better than 10.0: 33 Number of HSP's better than 10.0 without gapping: 33 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 67572 Number of HSP's gapped (non-prelim): 138 length of query: 437 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 415 effective length of database: 17,147,199,772 effective search space: 7116087905380 effective search space used: 7116087905380 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)