ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl08a05
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_464028.1| Oryza sativa (japonica cultivar-group), mRNA 285 5e-74
2emb|AJ535211.1|OSA535211 Oryza sativa mRNA for SMC3 protein 285 5e-74
3ref|XM_464029.1| Oryza sativa (japonica cultivar-group), mRNA 206 4e-50
4dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 145 1e-31
5dbj|AP004997.2| Oryza sativa (japonica cultivar-group) genomic D... 145 1e-31
6dbj|AP004799.3| Oryza sativa (japonica cultivar-group) genomic D... 121 2e-24
7gb|AE015924.1| Porphyromonas gingivalis W83, complete genome 48 0.022
8emb|AL139411.11| Human DNA sequence from clone RP11-222A5 on chr... 44 0.34
9gb|CP000080.1| Leishmania major strain Friedlin chromosome 29, c... 42 1.3
10gb|AC140265.2| Mus musculus BAC clone RP23-318B18 from chromosom... 42 1.3
11gb|AC113501.7| Mus musculus chromosome 6, clone RP23-367E20, com... 42 1.3
12gb|CP000024.1| Streptococcus thermophilus CNRZ1066, complete genome 40 5.3
13gb|AE013033.1| Thermoanaerobacter tengcongensis MB4, section 60 ... 40 5.3
14gb|AC183762.2| Pan troglodytes BAC clone CH251-684C16 from chrom... 40 5.3
15gb|AC183595.3| Pan troglodytes BAC clone CH251-641G8 from chromo... 40 5.3
16ref|XM_458686.1| Debaryomyces hansenii CBS767 hypothetical prote... 40 5.3
17gb|AC183765.3| Pan troglodytes BAC clone CH251-521I2 from chromo... 40 5.3
18gb|AC092107.5| Homo sapiens BAC clone RP11-755J8 from UL, comple... 40 5.3
19emb|CR769776.8| Human DNA sequence from clone RP11-793G16 on chr... 40 5.3
20emb|CR848007.6| Human DNA sequence from clone RP11-115C9 on chro... 40 5.3
21emb|BX649567.3| Human DNA sequence from clone RP11-195B21 on chr... 40 5.3
22emb|AL445664.14| Human DNA sequence from clone RP11-343J18 on ch... 40 5.3
23emb|AL136981.22| Human DNA sequence from clone RP11-526D8 on chr... 40 5.3
24emb|CR382136.1| Debaryomyces hansenii chromosome D of strain CBS... 40 5.3
25gb|DQ397615.1| Cenarchaeum symbiosum clone C20B09, complete sequ... 40 5.3
26gb|AC125394.27| Pan troglodytes clone rp43-45i3, complete sequence 40 5.3
27dbj|AK092114.1| Homo sapiens cDNA FLJ34795 fis, clone NT2NE2005921 40 5.3
28gb|CP000123.1| Mycoplasma capricolum subsp. capricolum ATCC 2734... 40 5.3
29gb|AC097374.3| Homo sapiens BAC clone RP11-71B7 from 2, complete... 40 5.3
30gb|AC009087.4|AC009087 Homo sapiens chromosome 16 clone RP11-384... 40 5.3
31emb|AL163540.11| Human DNA sequence from clone RP11-348N17 on ch... 40 5.3
32gb|AC136517.3| Mus musculus BAC clone RP23-259O15 from 1, comple... 40 5.3
33emb|AL929466.8| Mouse DNA sequence from clone RP23-431F3 on chro... 40 5.3
34dbj|AP006360.1| Lotus japonicus genomic DNA, chromosome 4, clone... 40 5.3
35gb|CP000023.1| Streptococcus thermophilus LMG 18311, complete ge... 40 5.3
36emb|AL671903.19| Mouse DNA sequence from clone RP23-274H16 on ch... 40 5.3
37dbj|AB025321.1| Homo sapiens DNA, 5' flanking region of haptoglo... 40 5.3
38dbj|AP001004.5| Homo sapiens genomic DNA, chromosome 18 clone:RP... 40 5.3 
>ref|XM_464028.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 3618

 Score =  285 bits (144), Expect = 5e-74
 Identities = 285/332 (85%)
 Strand = Plus / Plus

                                                                        
Query: 63   agtgaaaagtcaaagtctgaattggctcaaattagtaaggtgcacgcggccaaattgaag 122
            ||||||||||||||||| ||||| ||| ||||||||||||||||    |||||||| |||
Sbjct: 1009 agtgaaaagtcaaagtccgaattagctgaaattagtaaggtgcatcaagccaaattaaag 1068

                                                                        
Query: 123  gaagaggaagatatatcgaaaagtataatggaccgagagaagcggctgagtatattgtac 182
            ||||||||||| ||||| ||||| ||||||||||| ||||||||| | ||||||||||||
Sbjct: 1069 gaagaggaagaaatatcaaaaagcataatggaccgtgagaagcggttaagtatattgtac 1128

                                                                        
Query: 183  caaaagcaggggagggcaactcaatttaagaatgaggctgccagagatgagtggcttcgg 242
            |||||||||||||||||||| |||||    ||  | |||||||||||| |||||||||  
Sbjct: 1129 caaaagcaggggagggcaacccaattcgcaaacaaagctgccagagataagtggcttcaa 1188

                                                                        
Query: 243  aaagaaattcatgatcttgagcgtgtacttttatcaaatagaaagcaggaaagcttactt 302
            || |||||| |||||||||||||||| |||||||||||| ||||||||||| | ||||||
Sbjct: 1189 aaggaaattgatgatcttgagcgtgtgcttttatcaaatcgaaagcaggaaggtttactt 1248

                                                                        
Query: 303  caagatgaaagtcagaagcttaaagacgaaattaataagttgacagaccacattgaatct 362
            ||||| ||||  |||||||||||||| ||||| ||||| ||||    | ||||||| || 
Sbjct: 1249 caagaagaaatccagaagcttaaagatgaaatcaataacttgaatagctacattgagtcc 1308

                                            
Query: 363  cgcagaagtgaatcaagcaagttagagtctgc 394
            || | ||||||||||||||| |||||||||||
Sbjct: 1309 cggaaaagtgaatcaagcaaattagagtctgc 1340
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>emb|AJ535211.1|OSA535211 Oryza sativa mRNA for SMC3 protein
          Length = 3618

 Score =  285 bits (144), Expect = 5e-74
 Identities = 285/332 (85%)
 Strand = Plus / Plus

                                                                        
Query: 63   agtgaaaagtcaaagtctgaattggctcaaattagtaaggtgcacgcggccaaattgaag 122
            ||||||||||||||||| ||||| ||| ||||||||||||||||    |||||||| |||
Sbjct: 1009 agtgaaaagtcaaagtccgaattagctgaaattagtaaggtgcatcaagccaaattaaag 1068

                                                                        
Query: 123  gaagaggaagatatatcgaaaagtataatggaccgagagaagcggctgagtatattgtac 182
            ||||||||||| ||||| ||||| ||||||||||| ||||||||| | ||||||||||||
Sbjct: 1069 gaagaggaagaaatatcaaaaagcataatggaccgtgagaagcggttaagtatattgtac 1128

                                                                        
Query: 183  caaaagcaggggagggcaactcaatttaagaatgaggctgccagagatgagtggcttcgg 242
            |||||||||||||||||||| |||||    ||  | |||||||||||| |||||||||  
Sbjct: 1129 caaaagcaggggagggcaacccaattcgcaaacaaagctgccagagataagtggcttcaa 1188

                                                                        
Query: 243  aaagaaattcatgatcttgagcgtgtacttttatcaaatagaaagcaggaaagcttactt 302
            || |||||| |||||||||||||||| |||||||||||| ||||||||||| | ||||||
Sbjct: 1189 aaggaaattgatgatcttgagcgtgtgcttttatcaaatcgaaagcaggaaggtttactt 1248

                                                                        
Query: 303  caagatgaaagtcagaagcttaaagacgaaattaataagttgacagaccacattgaatct 362
            ||||| ||||  |||||||||||||| ||||| ||||| ||||    | ||||||| || 
Sbjct: 1249 caagaagaaatccagaagcttaaagatgaaatcaataacttgaatagctacattgagtcc 1308

                                            
Query: 363  cgcagaagtgaatcaagcaagttagagtctgc 394
            || | ||||||||||||||| |||||||||||
Sbjct: 1309 cggaaaagtgaatcaagcaaattagagtctgc 1340
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>ref|XM_464029.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 3672

 Score =  206 bits (104), Expect = 4e-50
 Identities = 272/328 (82%)
 Strand = Plus / Plus

                                                                        
Query: 18   gcaaaggatgaagccgtaagggaattaaatagtatgaggaaagaaagtgaaaagtcaaag 77
            |||||||||||||| |  ||||| | | | ||| ||||||  || ||||||| |||||||
Sbjct: 952  gcaaaggatgaagctgcgagggattcacaaagtgtgaggatggagagtgaaaggtcaaag 1011

                                                                        
Query: 78   tctgaattggctcaaattagtaaggtgcacgcggccaaattgaaggaagaggaagatata 137
            |||||||| ||| | | ||||||||||||     ||||| ||| |||||||||||| |||
Sbjct: 1012 tctgaattagctgagactagtaaggtgcatcaaaccaaactgagggaagaggaagaaata 1071

                                                                        
Query: 138  tcgaaaagtataatggaccgagagaagcggctgagtatattgtaccaaaagcaggggagg 197
            || ||||| |||||||||||  |||||| | | |||||||||||||||||||||||||||
Sbjct: 1072 tcaaaaagcataatggaccgtcagaagcagttaagtatattgtaccaaaagcaggggagg 1131

                                                                        
Query: 198  gcaactcaatttaagaatgaggctgccagagatgagtggcttcggaaagaaattcatgat 257
            ||||| ||||||   ||  | |||||||||||| |||||||||  || |||||| |||||
Sbjct: 1132 gcaacccaatttgcaaacaaagctgccagagataagtggcttcaaaaggaaattgatgat 1191

                                                                        
Query: 258  cttgagcgtgtacttttatcaaatagaaagcaggaaagcttacttcaagatgaaagtcag 317
            |||||| |||| |||||||||||  ||||||||| | | ||||| ||||| ||||  |||
Sbjct: 1192 cttgagtgtgtgcttttatcaaaccgaaagcagggaggtttactccaagaagaaatccag 1251

                                        
Query: 318  aagcttaaagacgaaattaataagttga 345
            |||||||||||| |||||||||| ||||
Sbjct: 1252 aagcttaaagacaaaattaataacttga 1279
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
               sequence
          Length = 35954743

 Score =  145 bits (73), Expect = 1e-31
 Identities = 127/145 (87%)
 Strand = Plus / Minus

                                                                           
Query: 147     ataatggaccgagagaagcggctgagtatattgtaccaaaagcaggggagggcaactcaa 206
               ||||||||||| ||||||||| | |||||||||||||||||||||||||||||||| |||
Sbjct: 1760940 ataatggaccgtgagaagcggttaagtatattgtaccaaaagcaggggagggcaacccaa 1760881

                                                                           
Query: 207     tttaagaatgaggctgccagagatgagtggcttcggaaagaaattcatgatcttgagcgt 266
               ||    ||  | |||||||||||| |||||||||  || |||||| ||||||||||||||
Sbjct: 1760880 ttcgcaaacaaagctgccagagataagtggcttcaaaaggaaattgatgatcttgagcgt 1760821

                                        
Query: 267     gtacttttatcaaatagaaagcagg 291
               || |||||||||||| |||||||||
Sbjct: 1760820 gtgcttttatcaaatcgaaagcagg 1760796



 Score =  121 bits (61), Expect = 2e-24
 Identities = 124/145 (85%)
 Strand = Plus / Minus

                                                                           
Query: 147     ataatggaccgagagaagcggctgagtatattgtaccaaaagcaggggagggcaactcaa 206
               |||||||||||  |||||| | | |||||||||||||||||||||||||||||||| |||
Sbjct: 1777193 ataatggaccgtcagaagcagttaagtatattgtaccaaaagcaggggagggcaacccaa 1777134

                                                                           
Query: 207     tttaagaatgaggctgccagagatgagtggcttcggaaagaaattcatgatcttgagcgt 266
               |||   ||  | |||||||||||| |||||||||  || |||||| ||||||||||| ||
Sbjct: 1777133 tttgcaaacaaagctgccagagataagtggcttcaaaaggaaattgatgatcttgagtgt 1777074

                                        
Query: 267     gtacttttatcaaatagaaagcagg 291
               || |||||||||||  |||||||||
Sbjct: 1777073 gtgcttttatcaaaccgaaagcagg 1777049



 Score = 85.7 bits (43), Expect = 1e-13
 Identities = 73/83 (87%)
 Strand = Plus / Minus

                                                                           
Query: 63      agtgaaaagtcaaagtctgaattggctcaaattagtaaggtgcacgcggccaaattgaag 122
               ||||||||||||||||| ||||| ||| ||||||||||||||||    |||||||| |||
Sbjct: 1761100 agtgaaaagtcaaagtccgaattagctgaaattagtaaggtgcatcaagccaaattaaag 1761041

                                      
Query: 123     gaagaggaagatatatcgaaaag 145
               ||||||||||| ||||| |||||
Sbjct: 1761040 gaagaggaagaaatatcaaaaag 1761018



 Score = 67.9 bits (34), Expect = 2e-08
 Identities = 82/98 (83%)
 Strand = Plus / Minus

                                                                           
Query: 297     ttacttcaagatgaaagtcagaagcttaaagacgaaattaataagttgacagaccacatt 356
               ||||||||||| ||||  |||||||||||||| ||||| ||||| ||||    | |||||
Sbjct: 1760516 ttacttcaagaagaaatccagaagcttaaagatgaaatcaataacttgaatagctacatt 1760457

                                                     
Query: 357     gaatctcgcagaagtgaatcaagcaagttagagtctgc 394
               || || || | ||||||||||||||| |||||||||||
Sbjct: 1760456 gagtcccggaaaagtgaatcaagcaaattagagtctgc 1760419



 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 69/83 (83%)
 Strand = Plus / Minus

                                                                           
Query: 63      agtgaaaagtcaaagtctgaattggctcaaattagtaaggtgcacgcggccaaattgaag 122
               ||||||| ||||||||||||||| ||| | | ||||||||||||     ||||| ||| |
Sbjct: 1777724 agtgaaaggtcaaagtctgaattagctgagactagtaaggtgcatcaaaccaaactgagg 1777665

                                      
Query: 123     gaagaggaagatatatcgaaaag 145
               ||||||||||| ||||| |||||
Sbjct: 1777664 gaagaggaagaaatatcaaaaag 1777642



 Score = 50.1 bits (25), Expect = 0.006
 Identities = 43/49 (87%)
 Strand = Plus / Minus

                                                                
Query: 297     ttacttcaagatgaaagtcagaagcttaaagacgaaattaataagttga 345
               ||||| ||||| ||||  ||||||||||||||| |||||||||| ||||
Sbjct: 1776888 ttactccaagaagaaatccagaagcttaaagacaaaattaataacttga 1776840
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>dbj|AP004997.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
             clone:P0030G11
          Length = 143943

 Score =  145 bits (73), Expect = 1e-31
 Identities = 127/145 (87%)
 Strand = Plus / Minus

                                                                         
Query: 147   ataatggaccgagagaagcggctgagtatattgtaccaaaagcaggggagggcaactcaa 206
             ||||||||||| ||||||||| | |||||||||||||||||||||||||||||||| |||
Sbjct: 78952 ataatggaccgtgagaagcggttaagtatattgtaccaaaagcaggggagggcaacccaa 78893

                                                                         
Query: 207   tttaagaatgaggctgccagagatgagtggcttcggaaagaaattcatgatcttgagcgt 266
             ||    ||  | |||||||||||| |||||||||  || |||||| ||||||||||||||
Sbjct: 78892 ttcgcaaacaaagctgccagagataagtggcttcaaaaggaaattgatgatcttgagcgt 78833

                                      
Query: 267   gtacttttatcaaatagaaagcagg 291
             || |||||||||||| |||||||||
Sbjct: 78832 gtgcttttatcaaatcgaaagcagg 78808



 Score =  121 bits (61), Expect = 2e-24
 Identities = 124/145 (85%)
 Strand = Plus / Minus

                                                                         
Query: 147   ataatggaccgagagaagcggctgagtatattgtaccaaaagcaggggagggcaactcaa 206
             |||||||||||  |||||| | | |||||||||||||||||||||||||||||||| |||
Sbjct: 95205 ataatggaccgtcagaagcagttaagtatattgtaccaaaagcaggggagggcaacccaa 95146

                                                                         
Query: 207   tttaagaatgaggctgccagagatgagtggcttcggaaagaaattcatgatcttgagcgt 266
             |||   ||  | |||||||||||| |||||||||  || |||||| ||||||||||| ||
Sbjct: 95145 tttgcaaacaaagctgccagagataagtggcttcaaaaggaaattgatgatcttgagtgt 95086

                                      
Query: 267   gtacttttatcaaatagaaagcagg 291
             || |||||||||||  |||||||||
Sbjct: 95085 gtgcttttatcaaaccgaaagcagg 95061



 Score = 85.7 bits (43), Expect = 1e-13
 Identities = 73/83 (87%)
 Strand = Plus / Minus

                                                                         
Query: 63    agtgaaaagtcaaagtctgaattggctcaaattagtaaggtgcacgcggccaaattgaag 122
             ||||||||||||||||| ||||| ||| ||||||||||||||||    |||||||| |||
Sbjct: 79112 agtgaaaagtcaaagtccgaattagctgaaattagtaaggtgcatcaagccaaattaaag 79053

                                    
Query: 123   gaagaggaagatatatcgaaaag 145
             ||||||||||| ||||| |||||
Sbjct: 79052 gaagaggaagaaatatcaaaaag 79030



 Score = 67.9 bits (34), Expect = 2e-08
 Identities = 82/98 (83%)
 Strand = Plus / Minus

                                                                         
Query: 297   ttacttcaagatgaaagtcagaagcttaaagacgaaattaataagttgacagaccacatt 356
             ||||||||||| ||||  |||||||||||||| ||||| ||||| ||||    | |||||
Sbjct: 78528 ttacttcaagaagaaatccagaagcttaaagatgaaatcaataacttgaatagctacatt 78469

                                                   
Query: 357   gaatctcgcagaagtgaatcaagcaagttagagtctgc 394
             || || || | ||||||||||||||| |||||||||||
Sbjct: 78468 gagtcccggaaaagtgaatcaagcaaattagagtctgc 78431



 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 69/83 (83%)
 Strand = Plus / Minus

                                                                         
Query: 63    agtgaaaagtcaaagtctgaattggctcaaattagtaaggtgcacgcggccaaattgaag 122
             ||||||| ||||||||||||||| ||| | | ||||||||||||     ||||| ||| |
Sbjct: 95736 agtgaaaggtcaaagtctgaattagctgagactagtaaggtgcatcaaaccaaactgagg 95677

                                    
Query: 123   gaagaggaagatatatcgaaaag 145
             ||||||||||| ||||| |||||
Sbjct: 95676 gaagaggaagaaatatcaaaaag 95654



 Score = 50.1 bits (25), Expect = 0.006
 Identities = 43/49 (87%)
 Strand = Plus / Minus

                                                              
Query: 297   ttacttcaagatgaaagtcagaagcttaaagacgaaattaataagttga 345
             ||||| ||||| ||||  ||||||||||||||| |||||||||| ||||
Sbjct: 94900 ttactccaagaagaaatccagaagcttaaagacaaaattaataacttga 94852
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>dbj|AP004799.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
             clone:P0585B01
          Length = 133231

 Score =  121 bits (61), Expect = 2e-24
 Identities = 124/145 (85%)
 Strand = Plus / Minus

                                                                         
Query: 147   ataatggaccgagagaagcggctgagtatattgtaccaaaagcaggggagggcaactcaa 206
             |||||||||||  |||||| | | |||||||||||||||||||||||||||||||| |||
Sbjct: 13837 ataatggaccgtcagaagcagttaagtatattgtaccaaaagcaggggagggcaacccaa 13778

                                                                         
Query: 207   tttaagaatgaggctgccagagatgagtggcttcggaaagaaattcatgatcttgagcgt 266
             |||   ||  | |||||||||||| |||||||||  || |||||| ||||||||||| ||
Sbjct: 13777 tttgcaaacaaagctgccagagataagtggcttcaaaaggaaattgatgatcttgagtgt 13718

                                      
Query: 267   gtacttttatcaaatagaaagcagg 291
             || |||||||||||  |||||||||
Sbjct: 13717 gtgcttttatcaaaccgaaagcagg 13693



 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 69/83 (83%)
 Strand = Plus / Minus

                                                                         
Query: 63    agtgaaaagtcaaagtctgaattggctcaaattagtaaggtgcacgcggccaaattgaag 122
             ||||||| ||||||||||||||| ||| | | ||||||||||||     ||||| ||| |
Sbjct: 14368 agtgaaaggtcaaagtctgaattagctgagactagtaaggtgcatcaaaccaaactgagg 14309

                                    
Query: 123   gaagaggaagatatatcgaaaag 145
             ||||||||||| ||||| |||||
Sbjct: 14308 gaagaggaagaaatatcaaaaag 14286



 Score = 50.1 bits (25), Expect = 0.006
 Identities = 43/49 (87%)
 Strand = Plus / Minus

                                                              
Query: 297   ttacttcaagatgaaagtcagaagcttaaagacgaaattaataagttga 345
             ||||| ||||| ||||  ||||||||||||||| |||||||||| ||||
Sbjct: 13532 ttactccaagaagaaatccagaagcttaaagacaaaattaataacttga 13484
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>gb|AE015924.1| Porphyromonas gingivalis W83, complete genome
          Length = 2343476

 Score = 48.1 bits (24), Expect = 0.022
 Identities = 24/24 (100%)
 Strand = Plus / Minus

                                       
Query: 120     aaggaagaggaagatatatcgaaa 143
               ||||||||||||||||||||||||
Sbjct: 1544960 aaggaagaggaagatatatcgaaa 1544937
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>emb|AL139411.11| Human DNA sequence from clone RP11-222A5 on chromosome 1q23.1-25.3
             Contains a novel gene, complete sequence
          Length = 116304

 Score = 44.1 bits (22), Expect = 0.34
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 278   aaatagaaagcaggaaagctta 299
             ||||||||||||||||||||||
Sbjct: 70800 aaatagaaagcaggaaagctta 70779
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>gb|CP000080.1| Leishmania major strain Friedlin chromosome 29, complete sequence
          Length = 1212674

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 10     aaaaacgagcaaaggatgaag 30
              |||||||||||||||||||||
Sbjct: 959621 aaaaacgagcaaaggatgaag 959641
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>gb|AC140265.2| Mus musculus BAC clone RP23-318B18 from chromosome 6, complete sequence
          Length = 178580

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 274   tatcaaatagaaagcaggaaa 294
             |||||||||||||||||||||
Sbjct: 48938 tatcaaatagaaagcaggaaa 48918
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>gb|AC113501.7| Mus musculus chromosome 6, clone RP23-367E20, complete sequence
          Length = 196932

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 190    aggggagggcaactcaatttaagaa 214
              ||||||||| |||||||||||||||
Sbjct: 100269 aggggagggaaactcaatttaagaa 100245
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>gb|CP000024.1| Streptococcus thermophilus CNRZ1066, complete genome
          Length = 1796226

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 335     taataagttgacagaccacattga 358
               |||||||| |||||||||||||||
Sbjct: 1545133 taataagtggacagaccacattga 1545110
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>gb|AE013033.1| Thermoanaerobacter tengcongensis MB4, section 60 of 244 of the
            complete genome
          Length = 9970

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 60   gaaagtgaaaagtcaaagtc 79
            ||||||||||||||||||||
Sbjct: 1895 gaaagtgaaaagtcaaagtc 1876
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>gb|AC183762.2| Pan troglodytes BAC clone CH251-684C16 from chromosome 2, complete
             sequence
          Length = 139973

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 366   agaagtgaatcaagcaagtt 385
             ||||||||||||||||||||
Sbjct: 25365 agaagtgaatcaagcaagtt 25346
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>gb|AC183595.3| Pan troglodytes BAC clone CH251-641G8 from chromosome 2, complete
              sequence
          Length = 211457

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 366    agaagtgaatcaagcaagtt 385
              ||||||||||||||||||||
Sbjct: 101040 agaagtgaatcaagcaagtt 101059
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>ref|XM_458686.1| Debaryomyces hansenii CBS767 hypothetical protein (DEHA0D05841g)
            partial mRNA
          Length = 1905

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 114  aaattgaaggaagaggaaga 133
            ||||||||||||||||||||
Sbjct: 1225 aaattgaaggaagaggaaga 1244
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>gb|AC183765.3| Pan troglodytes BAC clone CH251-521I2 from chromosome 2, complete
              sequence
          Length = 179528

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 366    agaagtgaatcaagcaagtt 385
              ||||||||||||||||||||
Sbjct: 102925 agaagtgaatcaagcaagtt 102906
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>gb|AC092107.5| Homo sapiens BAC clone RP11-755J8 from UL, complete sequence
          Length = 137617

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 366   agaagtgaatcaagcaagtt 385
             ||||||||||||||||||||
Sbjct: 92508 agaagtgaatcaagcaagtt 92489
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>emb|CR769776.8| Human DNA sequence from clone RP11-793G16 on chromosome 9 Contains three
              novel pseudogenes, the gene for a novel protein similar to
              ankyrin repeat domain 20A (ANKRD20A), the gene for a  novel
              protein similar to Ankyrin repeat domain protein 18A
              (LOC441424), a pseudogene similar to part of cytochrome
              P450 family protein, a novel zinc finger pseudogene and a
              CpG island, complete sequence
          Length = 161157

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 366    agaagtgaatcaagcaagtt 385
              ||||||||||||||||||||
Sbjct: 100308 agaagtgaatcaagcaagtt 100289
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>emb|CR848007.6| Human DNA sequence from clone RP11-115C9 on chromosome 9 Contains a
              calponin 2 (CNN2) pseudogene, a novel zinc finger
              pseudogene, a pseudogene similar to part of cytochrome
              P450, subfamily IVF, a chromosome 2 open reading frame 14
              (C2orf14) pseudogene, a pseudogene similar to part of
              sorting nexin associated golgi protein 1 (SNAG1), a
              melanoma antigen (LOC51152) pseudogene, four novel
              pseudogenes and an ankyrin repeat domain 20A (ANKRD20A)
              pseudogene, complete sequence
          Length = 149891

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 366    agaagtgaatcaagcaagtt 385
              ||||||||||||||||||||
Sbjct: 114719 agaagtgaatcaagcaagtt 114700
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>emb|BX649567.3| Human DNA sequence from clone RP11-195B21 on chromosome 9 Contains a
             novel pseudogene, the gene for a novel protein similar to
             ankyrin repeat domain 20A (ANKRD20A), a novel gene and a
             CpG island, complete sequence
          Length = 99502

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 366   agaagtgaatcaagcaagtt 385
             ||||||||||||||||||||
Sbjct: 45523 agaagtgaatcaagcaagtt 45542
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>emb|AL445664.14| Human DNA sequence from clone RP11-343J18 on chromosome 9 Contains part
              of a novel gene, the 3' end of a novel gene and a CpG
              island, complete sequence
          Length = 161002

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 275    atcaaatagaaagcaggaaa 294
              ||||||||||||||||||||
Sbjct: 150272 atcaaatagaaagcaggaaa 150253
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>emb|AL136981.22| Human DNA sequence from clone RP11-526D8 on chromosome 9 Contains the
             5' end of the gene for coiled-coil protein (BICD2)
             (KIAA0699), a novel gene, a eukaryotic translation
             elongation factor 1 delta (guanine nucleotide exchange
             protein) (EEF1D) pseudogene, the gene for a novel KRAB
             box-containing C2H2 type zinc finger protein, a novel
             gene, a pseudogene similar to part of sorting nexin
             associated golgi protein 1 (SNAG1), a novel pseudogene, a
             melanoma antigen pseudogene and three CpG islands,
             complete sequence
          Length = 182280

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 366   agaagtgaatcaagcaagtt 385
             ||||||||||||||||||||
Sbjct: 87244 agaagtgaatcaagcaagtt 87263
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>emb|CR382136.1| Debaryomyces hansenii chromosome D of strain CBS767 of Debaryomyces
              hansenii
          Length = 1602771

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 114    aaattgaaggaagaggaaga 133
              ||||||||||||||||||||
Sbjct: 419377 aaattgaaggaagaggaaga 419358
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>gb|DQ397615.1| Cenarchaeum symbiosum clone C20B09, complete sequence
          Length = 39122

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 110  ggccaaattgaaggaagaggaaga 133
            ||||||||||||||||||| ||||
Sbjct: 3656 ggccaaattgaaggaagagaaaga 3633
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>gb|AC125394.27| Pan troglodytes clone rp43-45i3, complete sequence
          Length = 214480

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 366    agaagtgaatcaagcaagtt 385
              ||||||||||||||||||||
Sbjct: 131214 agaagtgaatcaagcaagtt 131195
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>dbj|AK092114.1| Homo sapiens cDNA FLJ34795 fis, clone NT2NE2005921
          Length = 2145

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 366 agaagtgaatcaagcaagtt 385
           ||||||||||||||||||||
Sbjct: 313 agaagtgaatcaagcaagtt 332
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>gb|CP000123.1| Mycoplasma capricolum subsp. capricolum ATCC 27343, complete genome
          Length = 1010023

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 119    gaaggaagaggaagatatatcgaa 142
              ||||||||| ||||||||||||||
Sbjct: 892296 gaaggaagaagaagatatatcgaa 892319
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>gb|AC097374.3| Homo sapiens BAC clone RP11-71B7 from 2, complete sequence
          Length = 127075

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 366   agaagtgaatcaagcaagtt 385
             ||||||||||||||||||||
Sbjct: 22724 agaagtgaatcaagcaagtt 22705
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>gb|AC009087.4|AC009087 Homo sapiens chromosome 16 clone RP11-384M15, complete sequence
          Length = 174933

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 279   aatagaaagcaggaaagctt 298
             ||||||||||||||||||||
Sbjct: 67342 aatagaaagcaggaaagctt 67361
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>emb|AL163540.11| Human DNA sequence from clone RP11-348N17 on chromosome 22, complete
              sequence
          Length = 166566

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 366    agaagtgaatcaagcaagtt 385
              ||||||||||||||||||||
Sbjct: 110574 agaagtgaatcaagcaagtt 110593
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>gb|AC136517.3| Mus musculus BAC clone RP23-259O15 from 1, complete sequence
          Length = 220632

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 8     tgaaaaacgagcaaaggatg 27
             ||||||||||||||||||||
Sbjct: 32310 tgaaaaacgagcaaaggatg 32329
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>emb|AL929466.8| Mouse DNA sequence from clone RP23-431F3 on chromosome 4, complete
            sequence
          Length = 116357

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 321  cttaaagacgaaattaataa 340
            ||||||||||||||||||||
Sbjct: 3754 cttaaagacgaaattaataa 3735
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>dbj|AP006360.1| Lotus japonicus genomic DNA, chromosome 4, clone:LjT42D17, TM0108,
              complete sequence
          Length = 117124

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 48     agtatgaggaaagaaagtgaaaag 71
              |||| |||||||||||||||||||
Sbjct: 107809 agtaagaggaaagaaagtgaaaag 107786
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>gb|CP000023.1| Streptococcus thermophilus LMG 18311, complete genome
          Length = 1796846

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 335     taataagttgacagaccacattga 358
               |||||||| |||||||||||||||
Sbjct: 1541633 taataagtggacagaccacattga 1541610
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>emb|AL671903.19| Mouse DNA sequence from clone RP23-274H16 on chromosome X, complete
             sequence
          Length = 102842

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 43    taaatagtatgaggaaagaa 62
             ||||||||||||||||||||
Sbjct: 88644 taaatagtatgaggaaagaa 88625
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>dbj|AB025321.1| Homo sapiens DNA, 5' flanking region of haptoglobin gene
          Length = 6540

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 279  aatagaaagcaggaaagctt 298
            ||||||||||||||||||||
Sbjct: 2966 aatagaaagcaggaaagctt 2947
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>dbj|AP001004.5| Homo sapiens genomic DNA, chromosome 18 clone:RP11-681B3, complete
              sequence
          Length = 182424

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 366    agaagtgaatcaagcaagtt 385
              ||||||||||||||||||||
Sbjct: 124972 agaagtgaatcaagcaagtt 124991


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,117,967
Number of Sequences: 3902068
Number of extensions: 4117967
Number of successful extensions: 106633
Number of sequences better than 10.0: 38
Number of HSP's better than 10.0 without gapping: 38
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 106455
Number of HSP's gapped (non-prelim): 161
length of query: 397
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 375
effective length of database: 17,147,199,772
effective search space: 6430199914500
effective search space used: 6430199914500
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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