>gb|CP000097.1| Synechococcus sp. CC9902, complete genome
          Length = 2234828

 Score = 40.1 bits (20), Expect = 2.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 121     ctcggcagcagccggttgcccgcc 144
               ||||||||||||||| ||||||||
Sbjct: 2075341 ctcggcagcagccggatgcccgcc 2075364

>ref|XM_415399.1| PREDICTED: Gallus gallus similar to GLP 618 12970 14472 like
           (4J465) (LOC417115), mRNA
          Length = 3732

 Score = 38.2 bits (19), Expect = 9.3
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 159 cagcggggcggtccggccc 177
           |||||||||||||||||||
Sbjct: 157 cagcggggcggtccggccc 139

>ref|XM_609420.2| PREDICTED: Bos taurus similar to immunoglobulin superfamily, member 3
            isoform 2 (LOC530939), mRNA
          Length = 4218

 Score = 38.2 bits (19), Expect = 9.3
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 151  ggctccggcagcggggcgg 169
            |||||||||||||||||||
Sbjct: 1250 ggctccggcagcggggcgg 1268

>gb|AY612854.1| Homo sapiens RAD17 homolog (S. pombe) (RAD17) gene, complete cds
          Length = 48212

 Score = 38.2 bits (19), Expect = 9.3
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 138 gcccgccccttccggctcc 156
           |||||||||||||||||||
Sbjct: 929 gcccgccccttccggctcc 911

>gb|AC145132.2| Homo sapiens chromosome 5 clone RP11-1113N2, complete sequence
          Length = 150263

 Score = 38.2 bits (19), Expect = 9.3
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 138  gcccgccccttccggctcc 156
            |||||||||||||||||||
Sbjct: 8457 gcccgccccttccggctcc 8475

>gb|AC145146.2| Homo sapiens chromosome 5 clone RP11-241G9, complete sequence
          Length = 177191

 Score = 38.2 bits (19), Expect = 9.3
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 138    gcccgccccttccggctcc 156
              |||||||||||||||||||
Sbjct: 136124 gcccgccccttccggctcc 136142

>gb|AC127567.4| Mus musculus BAC clone RP24-191P12 from chromosome 6, complete sequence
          Length = 185620

 Score = 38.2 bits (19), Expect = 9.3
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 138    gcccgccccttccggctcc 156
              |||||||||||||||||||
Sbjct: 134038 gcccgccccttccggctcc 134020

>gb|AC145145.2| Homo sapiens chromosome 5 clone RP11-14E21, complete sequence
          Length = 174962

 Score = 38.2 bits (19), Expect = 9.3
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 138   gcccgccccttccggctcc 156
             |||||||||||||||||||
Sbjct: 70934 gcccgccccttccggctcc 70952

>gb|AC144587.2| Homo sapiens chromosome 5 clone RP11-2H18, complete sequence
          Length = 156757

 Score = 38.2 bits (19), Expect = 9.3
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 138    gcccgccccttccggctcc 156
              |||||||||||||||||||
Sbjct: 119357 gcccgccccttccggctcc 119375

>emb|AL356957.27| Human DNA sequence from clone RP11-403I13 on chromosome 1 Contains the 5'
              end of a novel pseudogene, a profilin 1 (PFN1) pseudogene,
              six novel genes and a novel pseudogene, complete sequence
          Length = 204702

 Score = 38.2 bits (19), Expect = 9.3
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                     
Query: 143    ccccttccggctccggcagcggg 165
              ||||| |||||||||||||||||
Sbjct: 115559 cccctgccggctccggcagcggg 115537

>gb|AC132164.1| Drosophila pseudoobscura  FOSMID DPSF1-548A11 (Children's Hospital
            Oakland Research Institute Drosophila pseudoobscura
            FOSMID Library) complete sequence
          Length = 42098

 Score = 38.2 bits (19), Expect = 9.3
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                   
Query: 167  cggtccggcccggtccggtcggg 189
            |||||||| ||||||||||||||
Sbjct: 3962 cggtccggtccggtccggtcggg 3984

>gb|AC109996.3| Homo sapiens chromosome 5 clone CTD-2014G23, complete sequence
          Length = 89297

 Score = 38.2 bits (19), Expect = 9.3
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 138   gcccgccccttccggctcc 156
             |||||||||||||||||||
Sbjct: 51117 gcccgccccttccggctcc 51135

>gb|DQ397836.1| Cenarchaeum symbiosum clone C02H06, complete sequence
          Length = 39848

 Score = 38.2 bits (19), Expect = 9.3
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 153   ctccggcagcggggcggtc 171
             |||||||||||||||||||
Sbjct: 14253 ctccggcagcggggcggtc 14235

>gb|DQ397834.1| Cenarchaeum symbiosum clone C02E12, complete sequence
          Length = 39848

 Score = 38.2 bits (19), Expect = 9.3
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 153   ctccggcagcggggcggtc 171
             |||||||||||||||||||
Sbjct: 25596 ctccggcagcggggcggtc 25614

>gb|DQ397608.1| Cenarchaeum symbiosum clone C12B02, complete sequence
          Length = 36797

 Score = 38.2 bits (19), Expect = 9.3
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 153   ctccggcagcggggcggtc 171
             |||||||||||||||||||
Sbjct: 28363 ctccggcagcggggcggtc 28345

>gb|DQ397607.1| Cenarchaeum symbiosum clone C12A09, complete sequence
          Length = 38974

 Score = 38.2 bits (19), Expect = 9.3
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 153   ctccggcagcggggcggtc 171
             |||||||||||||||||||
Sbjct: 16030 ctccggcagcggggcggtc 16048

>gb|DQ397581.1| Cenarchaeum symbiosum clone C18H11, complete sequence
          Length = 41463

 Score = 38.2 bits (19), Expect = 9.3
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 153   ctccggcagcggggcggtc 171
             |||||||||||||||||||
Sbjct: 28500 ctccggcagcggggcggtc 28518

>gb|AE015928.1| Bacteroides thetaiotaomicron VPI-5482, complete genome
          Length = 6260361

 Score = 38.2 bits (19), Expect = 9.3
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                  
Query: 12      cagtcgcctcacttccccc 30
               |||||||||||||||||||
Sbjct: 2670581 cagtcgcctcacttccccc 2670599

>gb|AC153869.7| Mus musculus 6 BAC RP23-386A17 (Roswell Park Cancer Institute (C57BL/6J
              Female) Mouse BAC Library) complete sequence
          Length = 222826

 Score = 38.2 bits (19), Expect = 9.3
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 138    gcccgccccttccggctcc 156
              |||||||||||||||||||
Sbjct: 132966 gcccgccccttccggctcc 132984

>gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome
          Length = 5331656

 Score = 38.2 bits (19), Expect = 9.3
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                  
Query: 123     cggcagcagccggttgccc 141
               |||||||||||||||||||
Sbjct: 4032647 cggcagcagccggttgccc 4032665

>gb|AC105118.23| Homo sapiens chromosome 8, clone RP11-909N17, complete sequence
          Length = 179941

 Score = 38.2 bits (19), Expect = 9.3
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 139   cccgccccttccggctccg 157
             |||||||||||||||||||
Sbjct: 78055 cccgccccttccggctccg 78073

>gb|AY189986.1| Homo sapiens TAF9 RNA polymerase II, TATA box binding protein
            (TBP)-associated factor, 32kDa (TAF9) gene, complete cds
          Length = 8149

 Score = 38.2 bits (19), Expect = 9.3
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 138  gcccgccccttccggctcc 156
            |||||||||||||||||||
Sbjct: 1872 gcccgccccttccggctcc 1890

>gb|AC006359.3|AC006359 Homo sapiens clone DJ1135M02, complete sequence
          Length = 118730

 Score = 38.2 bits (19), Expect = 9.3
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                     
Query: 143    ccccttccggctccggcagcggg 165
              ||||| |||||||||||||||||
Sbjct: 112833 cccctgccggctccggcagcggg 112855

>ref|NM_016283.4| Homo sapiens TAF9 RNA polymerase II, TATA box binding protein
           (TBP)-associated factor, 32kDa (TAF9), transcript
           variant 2, mRNA
          Length = 962

 Score = 38.2 bits (19), Expect = 9.3
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 138 gcccgccccttccggctcc 156
           |||||||||||||||||||
Sbjct: 17  gcccgccccttccggctcc 35

>ref|NM_003187.4| Homo sapiens TAF9 RNA polymerase II, TATA box binding protein
           (TBP)-associated factor, 32kDa (TAF9), transcript
           variant 1, mRNA
          Length = 1245

 Score = 38.2 bits (19), Expect = 9.3
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 138 gcccgccccttccggctcc 156
           |||||||||||||||||||
Sbjct: 17  gcccgccccttccggctcc 35

>gb|CP000085.1| Burkholderia thailandensis E264 chromosome II, complete sequence
          Length = 2914771

 Score = 38.2 bits (19), Expect = 9.3
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                  
Query: 156     cggcagcggggcggtccgg 174
               |||||||||||||||||||
Sbjct: 1997316 cggcagcggggcggtccgg 1997298


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 632,588
Number of Sequences: 3902068
Number of extensions: 632588
Number of successful extensions: 45256
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 45072
Number of HSP's gapped (non-prelim): 184
length of query: 189
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 167
effective length of database: 17,147,199,772
effective search space: 2863582361924
effective search space used: 2863582361924
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)