ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl08a03 |
|---|---|
| Clone Library Name | barley_pub |
>WDR47_HUMAN (O94967) WD-repeat protein 47| Length = 919 Score = 43.5 bits (101), Expect = 3e-04 Identities = 32/97 (32%), Positives = 52/97 (53%), Gaps = 8/97 (8%) Frame = +3 Query: 207 ELVFLILQFLDEEKFKETVHKLEQESG-----FYFNIKYFEEKVHAGEWDEVGRY---LS 362 E++ LIL FL+ +K ++ LE+ESG F ++ + + + G+WDEV ++ L Sbjct: 13 EIIKLILDFLNSKKLHISMLALEKESGVINGLFSDDMLFLRQLILDGQWDEVLQFIQPLE 72 Query: 363 GFTKVDDNRYSMKIFFEIRKQKYLEALDRHDRAXAVD 473 K D R+ + I KQK+LEAL ++ A D Sbjct: 73 CMEKFDKKRFR----YIILKQKFLEALCVNNAMSAED 105
>WDR47_MOUSE (Q8CGF6) WD-repeat protein 47| Length = 920 Score = 43.5 bits (101), Expect = 3e-04 Identities = 32/97 (32%), Positives = 52/97 (53%), Gaps = 8/97 (8%) Frame = +3 Query: 207 ELVFLILQFLDEEKFKETVHKLEQESG-----FYFNIKYFEEKVHAGEWDEVGRY---LS 362 E++ LIL FL+ +K ++ LE+ESG F ++ + + + G+WDEV ++ L Sbjct: 13 EIIKLILDFLNSKKLHISMLALEKESGVINGLFSDDMLFLRQLILDGQWDEVLQFIQPLE 72 Query: 363 GFTKVDDNRYSMKIFFEIRKQKYLEALDRHDRAXAVD 473 K D R+ + I KQK+LEAL ++ A D Sbjct: 73 CMEKFDKKRFR----YIILKQKFLEALCVNNAMSAED 105
>CT011_MOUSE (Q9D7M1) Protein C20orf11 homolog (Two-hybrid associated protein 1| with RanBPM) (Twa1) Length = 228 Score = 31.2 bits (69), Expect = 1.5 Identities = 22/95 (23%), Positives = 43/95 (45%), Gaps = 10/95 (10%) Frame = +3 Query: 219 LILQFLDEEKFKETVHKLEQESGF--YFNIKYFEEKVHAGEWDEVGRYLSGFTKV----- 377 LI+ +L E FKE K ESG +++ +E++ E G+ + Sbjct: 32 LIMNYLVTEGFKEAAEKFRMESGIEPSVDLETLDERIKIREMILKGQIQEAIALINSLHP 91 Query: 378 ---DDNRYSMKIFFEIRKQKYLEALDRHDRAXAVD 473 D NRY ++F +++Q +E + + + A++ Sbjct: 92 ELLDTNRY---LYFHLQQQHLIELIRQRETEAALE 123
>CT011_HUMAN (Q9NWU2) Protein C20orf11 (Two-hybrid associated protein 1 with| RanBPM) (Twa1) Length = 228 Score = 31.2 bits (69), Expect = 1.5 Identities = 22/95 (23%), Positives = 43/95 (45%), Gaps = 10/95 (10%) Frame = +3 Query: 219 LILQFLDEEKFKETVHKLEQESGF--YFNIKYFEEKVHAGEWDEVGRYLSGFTKV----- 377 LI+ +L E FKE K ESG +++ +E++ E G+ + Sbjct: 32 LIMNYLVTEGFKEAAEKFRMESGIEPSVDLETLDERIKIREMILKGQIQEAIALINSLHP 91 Query: 378 ---DDNRYSMKIFFEIRKQKYLEALDRHDRAXAVD 473 D NRY ++F +++Q +E + + + A++ Sbjct: 92 ELLDTNRY---LYFHLQQQHLIELIRQRETEAALE 123
>PEX19_YEAST (Q07418) Farnesylated protein PEX19 (Peroxin-19)| Length = 350 Score = 30.0 bits (66), Expect = 3.3 Identities = 21/78 (26%), Positives = 39/78 (50%), Gaps = 3/78 (3%) Frame = +3 Query: 222 ILQFLDEEKFKETVHKLEQESGFYFNIKYFEEKVHAGEWDEVGRYLSGFTKVDD--NRYS 395 I + LD+ KE +++ +E F + + E + +++G Y F VD+ N Y Sbjct: 220 ITKILDQMTSKEVLYEPMKEMRSEFGVWFQENGENEEHKEKIGTYKRQFNIVDEIVNIYE 279 Query: 396 MKIFFEIR-KQKYLEALD 446 +K + E++ K + E LD Sbjct: 280 LKDYDELKHKDRVTELLD 297
>RF2_YERPE (Q8ZHK4) Peptide chain release factor 2 (RF-2)| Length = 366 Score = 29.3 bits (64), Expect = 5.7 Identities = 20/63 (31%), Positives = 33/63 (52%), Gaps = 5/63 (7%) Frame = +3 Query: 210 LVFLILQFLDEEKFKETVHKLEQESGFYFNIKYFEEKVHAGEWDEVGRYL-----SGFTK 374 L+ L ++ DEE F ET+ +LE G +++ ++ +GE+D YL SG T+ Sbjct: 84 LLELAVEADDEETFNETIAELEVLDGKLGQLEF--RRMFSGEYDRANCYLDLQAGSGGTE 141 Query: 375 VDD 383 D Sbjct: 142 AQD 144
>Y402_METJA (Q57845) Hypothetical protein MJ0402| Length = 106 Score = 29.3 bits (64), Expect = 5.7 Identities = 16/45 (35%), Positives = 25/45 (55%), Gaps = 4/45 (8%) Frame = +3 Query: 306 YFEEK----VHAGEWDEVGRYLSGFTKVDDNRYSMKIFFEIRKQK 428 Y +EK VHA WD Y+ G+ +VD+ RY + E+ ++K Sbjct: 44 YVDEKTGALVHA--WDLYRGYVPGYAEVDERRYLEETIKELEEEK 86
>MDN1_GIALA (Q8T5T1) Midasin (MIDAS-containing protein)| Length = 4835 Score = 29.3 bits (64), Expect = 5.7 Identities = 17/53 (32%), Positives = 25/53 (47%) Frame = +3 Query: 303 KYFEEKVHAGEWDEVGRYLSGFTKVDDNRYSMKIFFEIRKQKYLEALDRHDRA 461 K FE+++ EW+E Y S T + +R KI ++Y E L RA Sbjct: 3532 KRFEDQIRIFEWNERSSYTSWLTAQNSHRLCTKII-----REYTEVLQHATRA 3579
>YM39_YEAST (Q03829) Putative mitochondrial carrier YMR166C| Length = 368 Score = 28.9 bits (63), Expect = 7.5 Identities = 13/28 (46%), Positives = 18/28 (64%) Frame = +3 Query: 204 RELVFLILQFLDEEKFKETVHKLEQESG 287 R+L F LQF EKF++ K+EQ+ G Sbjct: 222 RDLPFSALQFAFYEKFRQLAFKIEQKDG 249
>OSTA_SHIFL (Q83SQ0) Organic solvent tolerance protein precursor| Length = 784 Score = 28.5 bits (62), Expect = 9.7 Identities = 19/59 (32%), Positives = 27/59 (45%), Gaps = 3/59 (5%) Frame = +3 Query: 225 LQFLDEEKFKETVHKLEQESG---FYFNIKYFEEKVHAGEWDEVGRYLSGFTKVDDNRY 392 L +L +K E H + S FY+N H+G D+V R+ +TKV D Y Sbjct: 289 LDYLPSDKVYEDEHPNDDSSRRWLFYWN--------HSGVMDQVWRFNVDYTKVSDPSY 339
>OSTA_ERWCT (Q6D0E3) Organic solvent tolerance protein precursor| Length = 787 Score = 28.5 bits (62), Expect = 9.7 Identities = 11/23 (47%), Positives = 17/23 (73%) Frame = +3 Query: 324 HAGEWDEVGRYLSGFTKVDDNRY 392 H+G D+V R+ + +TKV D+RY Sbjct: 316 HSGVMDQVWRFDADYTKVSDDRY 338
>OSTA_ECOLI (P31554) Organic solvent tolerance protein precursor| Length = 784 Score = 28.5 bits (62), Expect = 9.7 Identities = 19/59 (32%), Positives = 27/59 (45%), Gaps = 3/59 (5%) Frame = +3 Query: 225 LQFLDEEKFKETVHKLEQESG---FYFNIKYFEEKVHAGEWDEVGRYLSGFTKVDDNRY 392 L +L +K E H + S FY+N H+G D+V R+ +TKV D Y Sbjct: 289 LDYLPSDKVYEDEHPNDDSSRRWLFYWN--------HSGVMDQVWRFNVDYTKVSDPSY 339
>OSTA_ECO57 (Q8XA13) Organic solvent tolerance protein precursor| Length = 784 Score = 28.5 bits (62), Expect = 9.7 Identities = 19/59 (32%), Positives = 27/59 (45%), Gaps = 3/59 (5%) Frame = +3 Query: 225 LQFLDEEKFKETVHKLEQESG---FYFNIKYFEEKVHAGEWDEVGRYLSGFTKVDDNRY 392 L +L +K E H + S FY+N H+G D+V R+ +TKV D Y Sbjct: 289 LDYLPSDKVYEDEHPNDDSSRRWLFYWN--------HSGVMDQVWRFNVDYTKVSDPSY 339
>CYB_WHEAT (P07747) Cytochrome b| Length = 398 Score = 28.5 bits (62), Expect = 9.7 Identities = 19/70 (27%), Positives = 31/70 (44%), Gaps = 6/70 (8%) Frame = -3 Query: 430 YFCFLISKKIFIEYLLSSTLVKPERYLPTSSHS------PAWTFSSKYLMLK*NPDSCSS 269 + F I I+I + + L P+ Y+P + S P W F Y +L+ PD Sbjct: 239 WVAFAIFFSIWI-FFAPNVLGHPDNYIPANPMSTPPHIVPEWYFLPIYAILRSIPDKAGG 297 Query: 268 LCTVSLNFSS 239 + ++L F S Sbjct: 298 VAAIALVFIS 307
>VE06_VACCV (P21607) Protein E6| Length = 567 Score = 28.5 bits (62), Expect = 9.7 Identities = 12/25 (48%), Positives = 16/25 (64%) Frame = +3 Query: 243 EKFKETVHKLEQESGFYFNIKYFEE 317 + +KETVHKL Q+ F KY +E Sbjct: 104 QSYKETVHKLTQDEKFLEVAKYMDE 128
>CYB_BRALA (P92472) Cytochrome b| Length = 380 Score = 28.5 bits (62), Expect = 9.7 Identities = 17/66 (25%), Positives = 30/66 (45%), Gaps = 6/66 (9%) Frame = -3 Query: 427 FCFLISKKIFIEYLLSSTLVKPERYLP-----TSSH-SPAWTFSSKYLMLK*NPDSCSSL 266 F L++ +FI + L PE Y+P T H P W F Y +L+ P+ + Sbjct: 233 FVVLLAGLVFIALFSPNLLTDPENYIPANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGV 292 Query: 265 CTVSLN 248 ++++ Sbjct: 293 VALAMS 298
>CYB_BRAFL (O47431) Cytochrome b| Length = 380 Score = 28.5 bits (62), Expect = 9.7 Identities = 17/66 (25%), Positives = 30/66 (45%), Gaps = 6/66 (9%) Frame = -3 Query: 427 FCFLISKKIFIEYLLSSTLVKPERYLP-----TSSH-SPAWTFSSKYLMLK*NPDSCSSL 266 F L++ +FI + L PE Y+P T H P W F Y +L+ P+ + Sbjct: 233 FVVLLAGLVFIALFSPNLLTDPENYIPANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGV 292 Query: 265 CTVSLN 248 ++++ Sbjct: 293 VALAMS 298
>YPZ5_METTF (P29579) Hypothetical 54.1 kDa protein (ORF5')| Length = 499 Score = 28.5 bits (62), Expect = 9.7 Identities = 15/56 (26%), Positives = 24/56 (42%) Frame = +3 Query: 294 FNIKYFEEKVHAGEWDEVGRYLSGFTKVDDNRYSMKIFFEIRKQKYLEALDRHDRA 461 FN+K HA V + SG + Y+ F ++ ++ LE LD + A Sbjct: 163 FNVKLKNRGPHAANNINVANFFSGGLAIQSYSYTTGYFDDVAREWILETLDTGEEA 218
>OMP32_COMAC (P24305) Outer membrane porin protein 32 precursor (OMP32)| Length = 351 Score = 28.5 bits (62), Expect = 9.7 Identities = 15/41 (36%), Positives = 20/41 (48%), Gaps = 1/41 (2%) Frame = +3 Query: 285 GFYFNIKY-FEEKVHAGEWDEVGRYLSGFTKVDDNRYSMKI 404 GF Y F+EK G D VGRY+ G+ D+ S + Sbjct: 166 GFNAGFGYAFDEKQTIGTADSVGRYIGGYVAYDNGPLSASL 206
>EBM_LILLO (Q5H7P5) Mannosylglycoprotein endo-beta-mannosidase (EC 3.2.1.152)| (Endo-beta-mannosidase) [Contains: Mannosylglycoprotein endo-beta-mannosidase 31 kDa subunit; Mannosylglycoprotein endo-beta-mannosidase 28 kDa subunit; Mannosylglycoprotein end Length = 952 Score = 28.5 bits (62), Expect = 9.7 Identities = 14/39 (35%), Positives = 23/39 (58%) Frame = +3 Query: 324 HAGEWDEVGRYLSGFTKVDDNRYSMKIFFEIRKQKYLEA 440 + G WDEV Y SG K+ D + + FF++ ++ YL + Sbjct: 190 NTGIWDEVSLYTSGPVKIAD-VHLVSSFFDMFRRAYLHS 227
>CYB_ORYSA (P14833) Cytochrome b| Length = 397 Score = 28.5 bits (62), Expect = 9.7 Identities = 19/70 (27%), Positives = 31/70 (44%), Gaps = 6/70 (8%) Frame = -3 Query: 430 YFCFLISKKIFIEYLLSSTLVKPERYLPTSSHS------PAWTFSSKYLMLK*NPDSCSS 269 + F I I+I + + L P+ Y+P + S P W F Y +L+ PD Sbjct: 239 WVAFAIFFSIWI-FFAPNVLGHPDNYIPANPMSTPPHIVPEWYFLPIYAILRSIPDKAGG 297 Query: 268 LCTVSLNFSS 239 + ++L F S Sbjct: 298 VAAIALVFIS 307 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 41,089,891 Number of Sequences: 219361 Number of extensions: 671648 Number of successful extensions: 2390 Number of sequences better than 10.0: 21 Number of HSP's better than 10.0 without gapping: 2317 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2385 length of database: 80,573,946 effective HSP length: 103 effective length of database: 57,979,763 effective search space used: 3304846491 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
