>BTF3_HUMAN (P20290) Transcription factor BTF3 (RNA polymerase B transcription|
           factor 3)
          Length = 206

 Score = 32.7 bits (73), Expect = 0.54
 Identities = 18/36 (50%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
 Frame = +1

Query: 40  RTTSSPARATSRGTWLARRN-PAGQALLSSPRPQTG 144
           R T +PA+A SRG   AR   P G+A LS P P+ G
Sbjct: 2   RRTGAPAQADSRGRGRARGGCPGGEATLSQPPPRGG 37

>CD97_MOUSE (Q9Z0M6) CD97 antigen precursor|
          Length = 818

 Score = 31.6 bits (70), Expect = 1.2
 Identities = 16/54 (29%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
 Frame = -1

Query: 314 WSCLAKEMDWNLCSSCEDSQFASV-ECVSDCPSPSGRSSISNICHNTVSFYECH 156
           +SC+ ++  W       +   ++V E V +C S   +   S +C NTV  Y+CH
Sbjct: 189 YSCICRQ-GWKPVPGSPNGPVSTVCEDVDECSSGQHQCHNSTVCKNTVGSYKCH 241

>NOLA1_XENTR (Q5RJV1) H/ACA ribonucleoprotein complex subunit 1-like protein|
          Length = 218

 Score = 30.8 bits (68), Expect = 2.1
 Identities = 17/34 (50%), Positives = 17/34 (50%)
 Frame = -2

Query: 118 GEPGPRDSGGRAKSRVK*RARGTTSFGGGGERRG 17
           GE GP   GGR   R   R RG    GGGG R G
Sbjct: 156 GEKGPPRGGGRGGGRGGGRGRGGGRGGGGGFRGG 189

>KPRS_PROMM (Q7V6S2) Ribose-phosphate pyrophosphokinase (EC 2.7.6.1) (RPPK)|
           (Phosphoribosyl pyrophosphate synthetase) (P-Rib-PP
           synthetase) (PRPP synthetase)
          Length = 332

 Score = 30.4 bits (67), Expect = 2.7
 Identities = 24/78 (30%), Positives = 32/78 (41%), Gaps = 11/78 (14%)
 Frame = +2

Query: 68  LHAGLGSPA---------GIPRARLSSPRRVPRLVD--LYDDIHKMILYCDIYLRWMICQ 214
           L +G  +PA         G+P      PR   R  D  LY  I + I  CD++L    C 
Sbjct: 24  LFSGTSNPALAREIAAYLGVP----DGPRICKRFADGELYVQIQESIRGCDVFLIQPTCA 79

Query: 215 MVRGNLIHTLLTQIGCPR 268
            V  NL+  L+    C R
Sbjct: 80  PVNDNLMELLIMVDACQR 97

>KPRS_ANASP (Q8YN97) Ribose-phosphate pyrophosphokinase (EC 2.7.6.1) (RPPK)|
           (Phosphoribosyl pyrophosphate synthetase) (P-Rib-PP
           synthetase) (PRPP synthetase)
          Length = 330

 Score = 30.0 bits (66), Expect = 3.5
 Identities = 15/41 (36%), Positives = 21/41 (51%)
 Frame = +2

Query: 146 DLYDDIHKMILYCDIYLRWMICQMVRGNLIHTLLTQIGCPR 268
           +LY  I + I  CD+YL    CQ V  +L+  L+    C R
Sbjct: 57  ELYVQIQESIRGCDVYLIQPCCQPVNDHLMELLIMVDACRR 97

>MYCN_CHICK (P18444) N-myc proto-oncogene protein|
          Length = 441

 Score = 30.0 bits (66), Expect = 3.5
 Identities = 18/44 (40%), Positives = 21/44 (47%)
 Frame = +3

Query: 3   LTSQDPLLSPPPPNDVVPRARYFTRDLARPPESRGPGSPLLAAS 134
           L S+ P  +PPPP  VVP A    R+       RGPG   L  S
Sbjct: 148 LQSKPPAAAPPPPPPVVPTAACRRRE----QPQRGPGRAELGGS 187

>ECM27_YEAST (P47144) Extracellular matrix protein 27|
          Length = 725

 Score = 30.0 bits (66), Expect = 3.5
 Identities = 21/80 (26%), Positives = 37/80 (46%)
 Frame = +2

Query: 242 LLTQIGCPRMKSISSNPFPWLNRTTIRIWQILLLTV*KVTIHFALLRNYGLLDLYRVQYL 421
           ++ ++ CP+  S   +  P LNR ++    I+LL +  +T  F L     +L  Y + YL
Sbjct: 411 IIFKLSCPQPPSDILSYDPTLNRYSLTTLPIILLFIQSITAPFLLCSILSVLLTYHLGYL 470

Query: 422 MDFIQLFRIRN*RSVLTPFL 481
           +    L        +LT F+
Sbjct: 471 VYLFPLILAMALILLLTAFI 490

>DHX57_MOUSE (Q6P5D3) Putative ATP-dependent RNA helicase DHX57 (EC 3.6.1.-)|
           (DEAH box protein 57)
          Length = 1388

 Score = 30.0 bits (66), Expect = 3.5
 Identities = 15/43 (34%), Positives = 20/43 (46%)
 Frame = -2

Query: 139 SGDAARRGEPGPRDSGGRAKSRVK*RARGTTSFGGGGERRGSC 11
           S    R+G+PG  D  G ++     +     S GGGG   GSC
Sbjct: 2   SSSVRRKGKPGKGDGKGSSRGGRGGKGHMNKSHGGGGGGGGSC 44

>WRK48_ARATH (Q9FGZ4) Probable WRKY transcription factor 48 (WRKY DNA-binding|
           protein 48)
          Length = 399

 Score = 29.6 bits (65), Expect = 4.6
 Identities = 22/81 (27%), Positives = 38/81 (46%), Gaps = 15/81 (18%)
 Frame = +1

Query: 226 QSDTHSTDANWLSSHEEHK----------FQSISLAK-----QDHNSDLADSSLNCMKGD 360
           Q+ + S  AN ++S + H           F + SL       +DH+S+  +S L+ ++ D
Sbjct: 42  QASSSSNMANLVTSSDHHPLELAGNLSSIFDTSSLPFPYSYFEDHSSNNPNSFLDLLRQD 101

Query: 361 HSFCASQELWSTGSLSSPIPN 423
           H F +S    S    + P+PN
Sbjct: 102 HQFASSSNSSSFSFDAFPLPN 122

>MDN1_YEAST (Q12019) Midasin (MIDAS-containing protein)|
          Length = 4910

 Score = 29.6 bits (65), Expect = 4.6
 Identities = 16/68 (23%), Positives = 33/68 (48%)
 Frame = +1

Query: 217  GEGQSDTHSTDANWLSSHEEHKFQSISLAKQDHNSDLADSSLNCMKGDHSFCASQELWST 396
            G+G      TD NWLS+  +    ++ L +    S   +++L+ +K D  F  ++ ++  
Sbjct: 3935 GDGIESISETDDNWLSASFKKVMVNVKLLRSSVVSKNIETALSLLK-DFDFTTTESIYVK 3993

Query: 397  GSLSSPIP 420
              +S  +P
Sbjct: 3994 SVISFTLP 4001

>ATX2_MOUSE (O70305) Ataxin-2 (Spinocerebellar ataxia type 2 protein homolog)|
          Length = 1285

 Score = 29.6 bits (65), Expect = 4.6
 Identities = 18/46 (39%), Positives = 22/46 (47%), Gaps = 2/46 (4%)
 Frame = +3

Query: 6   TSQDPLLSPPPPNDVVPRARYFTRDLARPPE--SRGPGSPLLAASP 137
           +S+ P      PN + PRA   TR  +RPP   SR P  P    SP
Sbjct: 529 SSRPPSRYQSGPNSLPPRAATHTRPPSRPPSRPSRPPSHPSAHGSP 574

>AGL_PEDPE (P43473) Alpha-glucosidase (EC 3.2.1.20) (Maltase)|
          Length = 557

 Score = 29.3 bits (64), Expect = 6.0
 Identities = 14/30 (46%), Positives = 16/30 (53%)
 Frame = -1

Query: 137 WGRGEERRAWPAGFRRASQVPREVARAGDD 48
           W  G E RAW + F      PR V+R GDD
Sbjct: 314 WQVGLEGRAWNSLFWNNHDTPRAVSRFGDD 343

>ESR1_BRARE (P57717) Estrogen receptor (ER) (Estradiol receptor) (ER-alpha)|
          Length = 569

 Score = 29.3 bits (64), Expect = 6.0
 Identities = 13/48 (27%), Positives = 25/48 (52%)
 Frame = +1

Query: 304 KQDHNSDLADSSLNCMKGDHSFCASQELWSTGSLSSPIPNGFYSIIPD 447
           K++H++    SS+N + G + +    + + T S + P   G+Y   PD
Sbjct: 4   KEEHSAGGISSSVNYLDGAYEYPNPTQTFGTSSPAEPASVGYYPAPPD 51

>UBP2_KLULA (O42726) Ubiquitin carboxyl-terminal hydrolase 2 (EC 3.1.2.15)|
            (Ubiquitin thioesterase 2) (Ubiquitin-specific-processing
            protease 2) (Deubiquitinating enzyme 2)
          Length = 1220

 Score = 29.3 bits (64), Expect = 6.0
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = -2

Query: 208  DHPSQIYVTIQYHFMNVIIQINQSGDAAR 122
            DHP  IY  + ++F N  + + + GD  R
Sbjct: 952  DHPKDIYDALDFYFQNDYLNLEEYGDVKR 980

>SSA27_HUMAN (O60232) Sjoegren syndrome/scleroderma autoantigen 1 (Autoantigen|
           p27)
          Length = 199

 Score = 28.9 bits (63), Expect = 7.8
 Identities = 16/51 (31%), Positives = 24/51 (47%)
 Frame = +3

Query: 9   SQDPLLSPPPPNDVVPRARYFTRDLARPPESRGPGSPLLAASPDWLICMMT 161
           S+ PL S P P   VPR  +     A    ++GP +P +  + D + C  T
Sbjct: 105 SELPLGSRPAPQPPVPRPEHCEGAAAGLKAAQGPPAPAVPPNTDVMACTQT 155

>SPEN_DROME (Q8SX83) Protein split ends|
          Length = 5560

 Score = 28.9 bits (63), Expect = 7.8
 Identities = 11/38 (28%), Positives = 20/38 (52%)
 Frame = +1

Query: 25   SPHHHRTTSSPARATSRGTWLARRNPAGQALLSSPRPQ 138
            +P  H    SP R  ++   + + +P G+ ++S P PQ
Sbjct: 3648 APSPHSPLHSPGRGVAQSRLVGQLSPVGRPMVSQPSPQ 3685

>ZBT17_CHICK (Q90625) Zinc finger and BTB domain-containing protein 17 (Zinc|
           finger protein 151) (Zinc finger protein Z13) (Fragment)
          Length = 706

 Score = 28.9 bits (63), Expect = 7.8
 Identities = 15/52 (28%), Positives = 21/52 (40%)
 Frame = +1

Query: 232 DTHSTDANWLSSHEEHKFQSISLAKQDHNSDLADSSLNCMKGDHSFCASQEL 387
           +TH TD      H + KF  +   K      +AD  L C +  + F  S  L
Sbjct: 337 ETHDTDKEHKCPHCDKKFNQVGNLKAHLKIHIADGPLKCRECGNEFTTSGNL 388

>ACR1_ACTEQ (Q3C258) Acrorhagin-1 precursor (Acrorhagin I)|
          Length = 70

 Score = 28.9 bits (63), Expect = 7.8
 Identities = 13/35 (37%), Positives = 20/35 (57%), Gaps = 2/35 (5%)
 Frame = -1

Query: 245 VECVSDCPSPSGRSSISNICHNTVSFYECH--HTD 147
           V+C  DC +      +S+ CH+  S ++CH  HTD
Sbjct: 29  VKCRHDCFTKYKSCQMSDSCHDEQSCHQCHVKHTD 63

>RHLB_XYLFT (Q879Y6) ATP-dependent RNA helicase rhlB (EC 3.6.1.-)|
          Length = 543

 Score = 28.9 bits (63), Expect = 7.8
 Identities = 17/35 (48%), Positives = 21/35 (60%)
 Frame = -2

Query: 124 RRGEPGPRDSGGRAKSRVK*RARGTTSFGGGGERR 20
           RRG+P  R S G    R++   +GT S GGGG RR
Sbjct: 424 RRGKP--RGSPGERDGRIR-VCKGTRSDGGGGRRR 455


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 79,250,742
Number of Sequences: 219361
Number of extensions: 1824742
Number of successful extensions: 6741
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 6044
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6722
length of database: 80,573,946
effective HSP length: 104
effective length of database: 57,760,402
effective search space used: 3465624120
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)