>ATL2M_ARATH (O82353) RING-H2 finger protein ATL2M|
          Length = 214

 Score = 32.3 bits (72), Expect = 0.48
 Identities = 25/79 (31%), Positives = 37/79 (46%), Gaps = 4/79 (5%)
 Frame = +2

Query: 179 MHCIMPPAPPQAGAMRMVTVLGQEDSSSAMQGGLILRKQQDRVTY----PRRSRSSAVGL 346
           +H  +PP+PPQAG    +T LG   S +   G L+L       +Y      R R++AV  
Sbjct: 13  VHPPLPPSPPQAGNHSYLTTLGFGYSIAIALGFLVLLSTVLLSSYICCRDSRRRTTAV-- 70

Query: 347 DVLAKRKRESQGSSVVMPR 403
                     +G SV++PR
Sbjct: 71  -----ESTGDRGGSVILPR 84

>TRFL_MOUSE (P08071) Lactotransferrin precursor (EC 3.4.21.-) (Lactoferrin)|
          Length = 707

 Score = 29.3 bits (64), Expect = 4.0
 Identities = 13/41 (31%), Positives = 22/41 (53%)
 Frame = -1

Query: 422 PPLPCWDEA*PRCCLVILVSSSQGRPNLQRSSLIDAGR*PY 300
           PPL C  ++  R C+  +V++      L   ++ DAG+ PY
Sbjct: 50  PPLSCVKKSSTRQCIQAIVTNRADAMTLDGGTMFDAGKPPY 90

>SMO_CHICK (O42224) Smoothened homolog precursor (SMO) (Fragment)|
          Length = 794

 Score = 28.5 bits (62), Expect = 6.9
 Identities = 16/54 (29%), Positives = 19/54 (35%)
 Frame = -1

Query: 410 CWDEA*PRCCLVILVSSSQGRPNLQRSSLIDAGR*PYPAVSARSDHPASRYCYP 249
           CWD   P  C V +     G+  L   +L  A R P   V      P    C P
Sbjct: 88  CWDVIQPLLCAVYMPKCEDGQVELPSQTLCQATRAPCTIVERERGWPDFLKCTP 141

>CRX_MOUSE (O54751) Cone-rod homeobox protein|
          Length = 299

 Score = 28.1 bits (61), Expect = 9.0
 Identities = 16/42 (38%), Positives = 22/42 (52%)
 Frame = -1

Query: 347 PNLQRSSLIDAGR*PYPAVSARSDHPASRYCYPPALGQSPSS 222
           P  QR+ L+ +G     A  A +  PAS +C  P+   SPSS
Sbjct: 172 PEAQRAGLVASGPSLTSAPYAMTYAPASAFCSSPSAYASPSS 213

>CRX_HUMAN (O43186) Cone-rod homeobox protein|
          Length = 299

 Score = 28.1 bits (61), Expect = 9.0
 Identities = 17/48 (35%), Positives = 24/48 (50%)
 Frame = -1

Query: 365 SSSQGRPNLQRSSLIDAGR*PYPAVSARSDHPASRYCYPPALGQSPSS 222
           +S    P  QR+ L+ +G     A  A +  PAS +C  P+   SPSS
Sbjct: 166 ASESPLPEAQRAGLVASGPSLTSAPYAMTYAPASAFCSSPSAYGSPSS 213

>CRX_BOVIN (Q9XSK0) Cone-rod homeobox protein|
          Length = 299

 Score = 28.1 bits (61), Expect = 9.0
 Identities = 17/48 (35%), Positives = 24/48 (50%)
 Frame = -1

Query: 365 SSSQGRPNLQRSSLIDAGR*PYPAVSARSDHPASRYCYPPALGQSPSS 222
           +S    P  QR+ L+ +G     A  A +  PAS +C  P+   SPSS
Sbjct: 166 ASESPLPEAQRAGLVASGPSLTSAPYAMTYAPASAFCSSPSAYGSPSS 213

>POLG_YEFV2 (P19901) Genome polyprotein [Contains: Capsid protein C (Core|
           protein); Envelope protein M (Matrix protein); Major
           envelope protein E; Nonstructural protein 1 (NS1);
           Nonstructural protein 2A (NS2A); Flavivirin protease
           NS2B regulatory subunit;
          Length = 3411

 Score = 28.1 bits (61), Expect = 9.0
 Identities = 13/42 (30%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
 Frame = +2

Query: 170 WKKMHCIMPPAPPQAGAMRMVTVLGQEDS-SSAMQGGLILRK 292
           W++MH ++   PP A  +R++ +  QE S  +A+ G + + K
Sbjct: 510 WREMHHLVEFEPPHAATIRVLALGNQEGSLKTALTGAMRVTK 551

>POLG_YEFV1 (P03314) Genome polyprotein [Contains: Capsid protein C (Core|
           protein); Envelope protein M (Matrix protein); Major
           envelope protein E; Nonstructural protein 1 (NS1);
           Nonstructural protein 2A (NS2A); Flavivirin protease
           NS2B regulatory subunit;
          Length = 3411

 Score = 28.1 bits (61), Expect = 9.0
 Identities = 13/42 (30%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
 Frame = +2

Query: 170 WKKMHCIMPPAPPQAGAMRMVTVLGQEDS-SSAMQGGLILRK 292
           W++MH ++   PP A  +R++ +  QE S  +A+ G + + K
Sbjct: 510 WREMHHLVEFEPPHAATIRVLALGNQEGSLKTALTGAMRVTK 551


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 51,454,870
Number of Sequences: 219361
Number of extensions: 957110
Number of successful extensions: 2954
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 2778
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2952
length of database: 80,573,946
effective HSP length: 101
effective length of database: 58,418,485
effective search space used: 2336739400
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)