ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl07h07
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1emb|AL357503.12| Human DNA sequence from clone RP5-899C14 on chr... 42 1.4
2emb|BX088700.1|CNS09S4S DNA centromeric region sequence from BAC... 42 1.4
3emb|BX294019.1|NC100H1 Neurospora crassa DNA linkage group V Cos... 42 1.4
4dbj|BA000012.4| Mesorhizobium loti MAFF303099 DNA, complete genome 42 1.4
5emb|AL627322.1|CNS07TIW DNA centromeric region sequence from BAC... 42 1.4
6ref|XM_479825.1| Oryza sativa (japonica cultivar-group), mRNA 40 5.7
7gb|AC102469.7| Mus musculus chromosome 1, clone RP24-356O3, comp... 40 5.7
8dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.7
9dbj|AP006723.2| Oryza sativa (japonica cultivar-group) genomic D... 40 5.7
10dbj|AP003925.3| Oryza sativa (japonica cultivar-group) genomic D... 40 5.7
11dbj|AK103562.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 5.7

>emb|AL357503.12| Human DNA sequence from clone RP5-899C14 on chromosome 20 Contains the
             3' end of the C20orf101 gene, complete sequence
          Length = 133288

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 381   gcagcagcgtggtcatgcctc 401
             |||||||||||||||||||||
Sbjct: 24608 gcagcagcgtggtcatgcctc 24588



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>emb|BX088700.1|CNS09S4S DNA centromeric region sequence from BAC DP26B06, DP34F04, DP16D11,
              DP09G08, DP35C12 of chromosome 5  of Podospora anserina
          Length = 322194

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 213    cgggcgcgatgaggatggtga 233
              |||||||||||||||||||||
Sbjct: 235293 cgggcgcgatgaggatggtga 235273



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>emb|BX294019.1|NC100H1 Neurospora crassa DNA linkage group V Cosmid contig 100H1
          Length = 77124

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 251   gatagcagtagcgcgatgcag 271
             |||||||||||||||||||||
Sbjct: 68492 gatagcagtagcgcgatgcag 68512



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>dbj|BA000012.4| Mesorhizobium loti MAFF303099 DNA, complete genome
          Length = 7036071

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 110     gggcaactcgtcttcgcgctc 130
               |||||||||||||||||||||
Sbjct: 2587353 gggcaactcgtcttcgcgctc 2587333



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>emb|AL627322.1|CNS07TIW DNA centromeric region sequence from BAC DP35C12 of chromosome 5 of
             Podospora anserina
          Length = 101256

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 213   cgggcgcgatgaggatggtga 233
             |||||||||||||||||||||
Sbjct: 86902 cgggcgcgatgaggatggtga 86922



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>ref|XM_479825.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2841

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 274  tggtctgatcttgcggaaacagca 297
            |||||||||||||| |||||||||
Sbjct: 2535 tggtctgatcttgcagaaacagca 2512



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>gb|AC102469.7| Mus musculus chromosome 1, clone RP24-356O3, complete sequence
          Length = 173767

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 1     acccaccaaaatcaatccca 20
             ||||||||||||||||||||
Sbjct: 19745 acccaccaaaatcaatccca 19764



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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
               sequence
          Length = 28434780

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 274     tggtctgatcttgcggaaacagca 297
               |||||||||||||| |||||||||
Sbjct: 1109129 tggtctgatcttgcagaaacagca 1109106



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>dbj|AP006723.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
             clone:B1203H11
          Length = 156561

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 274   tggtctgatcttgcggaaacagca 297
             |||||||||||||| |||||||||
Sbjct: 22366 tggtctgatcttgcagaaacagca 22343



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>dbj|AP003925.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
              clone:OJ1005_B05
          Length = 144799

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 274    tggtctgatcttgcggaaacagca 297
              |||||||||||||| |||||||||
Sbjct: 137656 tggtctgatcttgcagaaacagca 137633



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>dbj|AK103562.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033132K03, full
            insert sequence
          Length = 2839

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 274  tggtctgatcttgcggaaacagca 297
            |||||||||||||| |||||||||
Sbjct: 2533 tggtctgatcttgcagaaacagca 2510


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,527,400
Number of Sequences: 3902068
Number of extensions: 2527400
Number of successful extensions: 45947
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 45893
Number of HSP's gapped (non-prelim): 54
length of query: 425
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 403
effective length of database: 17,147,199,772
effective search space: 6910321508116
effective search space used: 6910321508116
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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