ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl07h05 |
|---|---|
| Clone Library Name | barley_pub |
>MAUG_METME (Q50233) Methylamine utilization protein mauG precursor| Length = 335 Score = 31.6 bits (70), Expect = 1.1 Identities = 14/35 (40%), Positives = 23/35 (65%) Frame = +3 Query: 72 LPAALSLLTHAFSTVHLQQLVAD*PWDWEGSIHGV 176 +P+ ++L+ HAF T L+ L D P+ +GSI G+ Sbjct: 246 VPSQVTLMQHAFKTPSLRDLSIDGPYMHDGSIRGL 280
>LGR4_RAT (Q9Z2H4) Leucine-rich repeat-containing G-protein coupled receptor| 4 precursor Length = 951 Score = 30.8 bits (68), Expect = 1.8 Identities = 11/19 (57%), Positives = 12/19 (63%) Frame = +1 Query: 361 CAITCKLDGERRSDCGGNG 417 CA C DG+RR DC G G Sbjct: 29 CAAPCSCDGDRRVDCSGKG 47
>LGR4_HUMAN (Q9BXB1) Leucine-rich repeat-containing G-protein coupled receptor| 4 precursor (G-protein coupled receptor 48) Length = 951 Score = 30.8 bits (68), Expect = 1.8 Identities = 11/19 (57%), Positives = 12/19 (63%) Frame = +1 Query: 361 CAITCKLDGERRSDCGGNG 417 CA C DG+RR DC G G Sbjct: 29 CAAPCSCDGDRRVDCSGKG 47
>RNPH_LISMO (Q8Y7N6) Ribonuclease PH (EC 2.7.7.56) (RNase PH) (tRNA| nucleotidyltransferase) Length = 248 Score = 30.4 bits (67), Expect = 2.3 Identities = 22/70 (31%), Positives = 36/70 (51%), Gaps = 1/70 (1%) Frame = -3 Query: 464 VVPVLSPAKLTTSVPFPFPPQSDRLSPSNLQVMAQSPQVHPLLCTARKANTADADVEMRG 285 + V++ AKL +VPF P D L+ +++ V+ + V L A D ++ M G Sbjct: 135 IAMVMAIAKLDEAVPFAKFPVKDFLAATSVGVLEEGGTVLDLNYVEDSAAQVDMNIIMTG 194 Query: 284 -GALVKLRET 258 GA V+L+ T Sbjct: 195 SGAFVELQGT 204
>RNPH_LISMF (Q720J1) Ribonuclease PH (EC 2.7.7.56) (RNase PH) (tRNA| nucleotidyltransferase) Length = 248 Score = 30.4 bits (67), Expect = 2.3 Identities = 22/70 (31%), Positives = 36/70 (51%), Gaps = 1/70 (1%) Frame = -3 Query: 464 VVPVLSPAKLTTSVPFPFPPQSDRLSPSNLQVMAQSPQVHPLLCTARKANTADADVEMRG 285 + V++ AKL +VPF P D L+ +++ V+ + V L A D ++ M G Sbjct: 135 IAMVMAIAKLDEAVPFAKFPVKDFLAATSVGVLEEGGTVLDLNYVEDSAAQVDMNIIMTG 194 Query: 284 -GALVKLRET 258 GA V+L+ T Sbjct: 195 SGAFVELQGT 204
>SYA_WOLTR (Q5GSS5) Alanyl-tRNA synthetase (EC 6.1.1.7) (Alanine--tRNA ligase)| (AlaRS) Length = 875 Score = 30.0 bits (66), Expect = 3.1 Identities = 14/44 (31%), Positives = 22/44 (50%) Frame = +1 Query: 313 VFAFRAVQSSGWTCGDCAITCKLDGERRSDCGGNGNGTEVVSFA 444 ++ R + SG C D +T D ERR + N + T ++ FA Sbjct: 546 LYLHRCIVKSGSICKDDIVTASTDKERRQNLRRNHSATHLLHFA 589
>RNPH_LISIN (Q92CH1) Ribonuclease PH (EC 2.7.7.56) (RNase PH) (tRNA| nucleotidyltransferase) Length = 248 Score = 30.0 bits (66), Expect = 3.1 Identities = 22/70 (31%), Positives = 35/70 (50%), Gaps = 1/70 (1%) Frame = -3 Query: 464 VVPVLSPAKLTTSVPFPFPPQSDRLSPSNLQVMAQSPQVHPLLCTARKANTADADVEMRG 285 + V++ AKL VPF P D L+ +++ V+ + V L A D ++ M G Sbjct: 135 IAMVMAIAKLDEEVPFTKFPVKDFLAATSVGVLEEGGTVLDLNYVEDSAAQVDMNIIMTG 194 Query: 284 -GALVKLRET 258 GA V+L+ T Sbjct: 195 SGAFVELQGT 204
>NIA_LOTJA (P39869) Nitrate reductase [NADH] (EC 1.7.1.1) (NR)| Length = 900 Score = 29.3 bits (64), Expect = 5.2 Identities = 11/22 (50%), Positives = 13/22 (59%) Frame = -2 Query: 213 HGAQQQPPSPALPHHGWILPSP 148 H +PP P L HHG+I P P Sbjct: 99 HPFNSEPPLPRLMHHGFITPVP 120
>NIA2_SOYBN (P39870) Inducible nitrate reductase [NADH] 2 (EC 1.7.1.1) (NR)| Length = 890 Score = 29.3 bits (64), Expect = 5.2 Identities = 11/22 (50%), Positives = 13/22 (59%) Frame = -2 Query: 213 HGAQQQPPSPALPHHGWILPSP 148 H +PP P L HHG+I P P Sbjct: 96 HPFNSEPPLPRLMHHGFITPVP 117
>NIA2_BRANA (P39868) Nitrate reductase [NADH], clone PBNBR1412 (EC 1.7.1.1)| (NR) Length = 911 Score = 28.9 bits (63), Expect = 6.8 Identities = 11/22 (50%), Positives = 13/22 (59%) Frame = -2 Query: 213 HGAQQQPPSPALPHHGWILPSP 148 H +PP P L HHG+I P P Sbjct: 118 HPFNAEPPLPRLMHHGFITPVP 139
>NOL11_BRARE (Q4V9P9) Nucleolar protein 11-like| Length = 708 Score = 28.9 bits (63), Expect = 6.8 Identities = 17/59 (28%), Positives = 33/59 (55%), Gaps = 3/59 (5%) Frame = -3 Query: 317 NTADADVE---MRGGALVKLRETSPXXXXXXAPEQRSTTALSSSRRPQLFHTMDGSFPV 150 +T D+++E + +L+ ++E SP EQ++ +SSS++ + F +MD PV Sbjct: 512 STPDSEMETLTLDTESLIIMKEMSPAQSQMEEGEQQNENGVSSSKQQRDFLSMDMKCPV 570
>VGLE_CHV9D (Q04548) Glycoprotein E precursor (Membrane glycoprotein 2)| Length = 604 Score = 28.5 bits (62), Expect = 8.9 Identities = 15/28 (53%), Positives = 17/28 (60%) Frame = +2 Query: 32 HTCTLRWAFTPLPAARCPLPPHARIQHC 115 HT T RW+F LPAA C L P + Q C Sbjct: 178 HTYTERWSF--LPAAPCKLTPPSIQQVC 203
>ZEP1_HUMAN (P15822) Zinc finger protein 40 (Human immunodeficiency virus type| I enhancer-binding protein 1) (HIV-EP1) (Major histocompatibility complex-binding protein 1) (MBP-1) (Positive regulatory domain II-binding factor 1) (PRDII-BF1) Length = 2717 Score = 28.5 bits (62), Expect = 8.9 Identities = 18/46 (39%), Positives = 21/46 (45%), Gaps = 4/46 (8%) Frame = -3 Query: 443 AKLTTSVPFPF----PPQSDRLSPSNLQVMAQSPQVHPLLCTARKA 318 A T S P PF P Q+ L + SP+ HPLLC KA Sbjct: 682 ADQTVSPPTPFARRFPAQNKTLEGVTDPLQLLSPRQHPLLCHREKA 727 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 63,669,237 Number of Sequences: 219361 Number of extensions: 1234227 Number of successful extensions: 5204 Number of sequences better than 10.0: 13 Number of HSP's better than 10.0 without gapping: 4707 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5198 length of database: 80,573,946 effective HSP length: 102 effective length of database: 58,199,124 effective search space used: 3026354448 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
