ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl07h02 |
|---|---|
| Clone Library Name | barley_pub |
>NOMO3_HUMAN (P69849) Nodal modulator 3 precursor (pM5 protein 3)| Length = 1222 Score = 110 bits (274), Expect = 2e-24 Identities = 62/159 (38%), Positives = 95/159 (59%), Gaps = 9/159 (5%) Frame = +2 Query: 17 VSGYNIHGSVVAQGNPILGVHLYLYSNDVKE---VPCSQGLIDA--PREGAL---CHAVS 172 V+GYN+ GSV + G P+ GV L+S+ V + + C+ + P++ +L C+ VS Sbjct: 214 VAGYNVSGSVRSDGEPMKGVKFLLFSSLVTKEDVLGCNVSPVPGFQPQDESLVYLCYTVS 273 Query: 173 GADGKFSFRSMPCGSYDLLPYYRGENTVFDVSPSSLHVSVEHSHMTIPQKFQVTGFSVGG 352 DG FSF S+P G Y ++P+YRGE FDV+PS L +VEH + I F V GFSV G Sbjct: 274 REDGSFSFYSLPSGGYTVIPFYRGERITFDVAPSRLDFTVEHDSLKIEPVFHVMGFSVTG 333 Query: 353 HVVDGYDA-GIEGAKVIIDGQLRAVTDNLGYYRLDQVTS 466 V++G + G+ A V ++ Q++ T G +RL+ +T+ Sbjct: 334 RVLNGPEGDGVPEAVVTLNNQIKVKTKADGSFRLENITT 372
>NOMO1_HUMAN (Q15155) Nodal modulator 1 precursor (pM5)| Length = 1222 Score = 110 bits (274), Expect = 2e-24 Identities = 62/159 (38%), Positives = 95/159 (59%), Gaps = 9/159 (5%) Frame = +2 Query: 17 VSGYNIHGSVVAQGNPILGVHLYLYSNDVKE---VPCSQGLIDA--PREGAL---CHAVS 172 V+GYN+ GSV + G P+ GV L+S+ V + + C+ + P++ +L C+ VS Sbjct: 214 VAGYNVSGSVRSDGEPMKGVKFLLFSSLVTKEDVLGCNVSPVPGFQPQDESLVYLCYTVS 273 Query: 173 GADGKFSFRSMPCGSYDLLPYYRGENTVFDVSPSSLHVSVEHSHMTIPQKFQVTGFSVGG 352 DG FSF S+P G Y ++P+YRGE FDV+PS L +VEH + I F V GFSV G Sbjct: 274 REDGSFSFYSLPSGGYTVIPFYRGERITFDVAPSRLDFTVEHDSLKIEPVFHVMGFSVTG 333 Query: 353 HVVDGYDA-GIEGAKVIIDGQLRAVTDNLGYYRLDQVTS 466 V++G + G+ A V ++ Q++ T G +RL+ +T+ Sbjct: 334 RVLNGPEGDGVPEAVVTLNNQIKVKTKADGSFRLENITT 372
>NOMO2_HUMAN (Q5JPE7) Nodal modulator 2 precursor (pM5 protein 2)| Length = 1267 Score = 110 bits (274), Expect = 2e-24 Identities = 62/159 (38%), Positives = 95/159 (59%), Gaps = 9/159 (5%) Frame = +2 Query: 17 VSGYNIHGSVVAQGNPILGVHLYLYSNDVKE---VPCSQGLIDA--PREGAL---CHAVS 172 V+GYN+ GSV + G P+ GV L+S+ V + + C+ + P++ +L C+ VS Sbjct: 214 VAGYNVSGSVRSDGEPMKGVKFLLFSSLVTKEDVLGCNVSPVPGFQPQDESLVYLCYTVS 273 Query: 173 GADGKFSFRSMPCGSYDLLPYYRGENTVFDVSPSSLHVSVEHSHMTIPQKFQVTGFSVGG 352 DG FSF S+P G Y ++P+YRGE FDV+PS L +VEH + I F V GFSV G Sbjct: 274 REDGSFSFYSLPSGGYTVIPFYRGERITFDVAPSRLDFTVEHDSLKIEPVFHVMGFSVTG 333 Query: 353 HVVDGYDA-GIEGAKVIIDGQLRAVTDNLGYYRLDQVTS 466 V++G + G+ A V ++ Q++ T G +RL+ +T+ Sbjct: 334 RVLNGPEGDGVPEAVVTLNNQIKVKTKADGSFRLENITT 372
>TRMU_SYNEL (Q8CWM0) Probable tRNA| (5-methylaminomethyl-2-thiouridylate)-methyltransferase (EC 2.1.1.61) Length = 369 Score = 32.0 bits (71), Expect = 0.82 Identities = 16/35 (45%), Positives = 24/35 (68%) Frame = +2 Query: 41 SVVAQGNPILGVHLYLYSNDVKEVPCSQGLIDAPR 145 S+ AQG+P++G+ L+L K CS+GL+DA R Sbjct: 23 SLKAQGHPVVGLTLWLMKG--KGQCCSEGLVDAAR 55
>XPO5_MOUSE (Q924C1) Exportin-5 (Ran-binding protein 21)| Length = 1204 Score = 30.0 bits (66), Expect = 3.1 Identities = 16/57 (28%), Positives = 28/57 (49%), Gaps = 7/57 (12%) Frame = -3 Query: 188 TSHPHQILHGKEHLPW--VHRSNLASKEPPL-----HHLNINTGELPRLDFPAQLQS 39 T+HP Q L H+ W + R + S++P L +L + L ++ FP++ S Sbjct: 360 TTHPSQFLRSSTHMTWGALFRHEVLSRDPALLAVIPKYLRASMTNLVKMGFPSKTDS 416
>YN03_CAEEL (Q03607) Hypothetical protein T23G5.3| Length = 262 Score = 29.3 bits (64), Expect = 5.3 Identities = 15/28 (53%), Positives = 19/28 (67%) Frame = -3 Query: 188 TSHPHQILHGKEHLPWVHRSNLASKEPP 105 T P+QIL KE++P V R+ L SK PP Sbjct: 116 TPIPNQILTQKENVPIVPRNLLLSKPPP 143
>4CL2_ORYSA (Q42982) 4-coumarate--CoA ligase 2 (EC 6.2.1.12) (4CL 2)| (4-coumaroyl-CoA synthase 2) Length = 569 Score = 28.9 bits (63), Expect = 6.9 Identities = 12/32 (37%), Positives = 17/32 (53%) Frame = -3 Query: 122 ASKEPPLHHLNINTGELPRLDFPAQLQSHEYC 27 A E P + + +LP +D P+ L HEYC Sbjct: 16 AVDEAPPEAVTVFRSKLPDIDIPSHLPLHEYC 47
>AGL5_ARATH (P29385) Agamous-like MADS-box protein AGL5| Length = 246 Score = 28.9 bits (63), Expect = 6.9 Identities = 14/40 (35%), Positives = 23/40 (57%) Frame = -1 Query: 448 SVIPEIICYSSQLTINYNLGTFNASIIAINNMTTNRKPSN 329 SVI + Y S +T ++ G +N + IA+N + N+ SN Sbjct: 198 SVIHQGTVYESGVTSSHQSGQYNRNYIAVNLLEPNQNSSN 237
>MBX1_SCHPO (O42954) MADS-box transcription factor 1| Length = 436 Score = 28.9 bits (63), Expect = 6.9 Identities = 15/45 (33%), Positives = 21/45 (46%) Frame = +2 Query: 185 KFSFRSMPCGSYDLLPYYRGENTVFDVSPSSLHVSVEHSHMTIPQ 319 K SF S G Y P ++ F V P SL+ ++ H +PQ Sbjct: 166 KHSFVSPVSGDYSDSPLEPSSSSSFSVPPESLNPTLSFQHNDVPQ 210
>THII_HAEI8 (Q4QKG3) Thiamine biosynthesis protein thiI| Length = 485 Score = 28.5 bits (62), Expect = 9.1 Identities = 15/51 (29%), Positives = 26/51 (50%), Gaps = 2/51 (3%) Frame = -3 Query: 155 EHLPWVHRSNLASKEP--PLHHLNINTGELPRLDFPAQLQSHEYCIQIRRK 9 + +P +H ++P LHH+ EL D QLQ +C++++RK Sbjct: 68 QRIPGIHHFLEVEEKPFTDLHHIF----ELTLADVAQQLQGKTFCVRVKRK 114
>SL9A9_HUMAN (Q8IVB4) Sodium/hydrogen exchanger 9 (Na(+)/H(+) exchanger 9)| (NHE-9) (Solute carrier family 9 member 9) Length = 645 Score = 28.5 bits (62), Expect = 9.1 Identities = 15/45 (33%), Positives = 23/45 (51%), Gaps = 3/45 (6%) Frame = -2 Query: 207 GIDLNENFPSAPDTAWQRAPSLGASIKPCEQGTSFT---SFEYKY 82 G+DL+EN P + Q A +L ++ E F SF++KY Sbjct: 492 GVDLDENLKEDPSSQHQEANNLDKNMTKAESARLFRMWYSFDHKY 536 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 66,172,420 Number of Sequences: 219361 Number of extensions: 1320497 Number of successful extensions: 3825 Number of sequences better than 10.0: 11 Number of HSP's better than 10.0 without gapping: 3735 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3815 length of database: 80,573,946 effective HSP length: 103 effective length of database: 57,979,763 effective search space used: 3072927439 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
