Clone Information

BLAST Search Result

Clone Name	bastl07h02
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	ref\|NM_189191.1\| Oryza sativa (japonica cultivar-group), predic...	456	e-125
2	dbj\|AP008207.1\| Oryza sativa (japonica cultivar-group) genomic D...	145	2e-31
3	dbj\|AP003578.1\| Oryza sativa (japonica cultivar-group) genomic D...	145	2e-31
4	dbj\|AP002883.2\| Oryza sativa (japonica cultivar-group) genomic D...	145	2e-31
5	gb\|BT014138.1\| Lycopersicon esculentum clone 133257F, mRNA sequence	58	3e-05
6	gb\|AE017143.1\| Haemophilus ducreyi strain 35000HP complete genome	50	0.007
7	gb\|AC102320.6\| Mus musculus chromosome 1, clone RP24-459A11, com...	44	0.41
8	gb\|AC011592.5\| Homo sapiens chromosome 3, clone RP11-42F12, comp...	44	0.41
9	gb\|AC117397.2\| Homo sapiens 3 BAC RP11-92D20 (Roswell Park Cance...	44	0.41
10	gb\|AC131661.4\| Mus musculus BAC clone RP23-251N10 from 1, comple...	44	0.41
11	ref\|XM_650274.1\| Entamoeba histolytica HM-1:IMSS villidin (30.t0...	42	1.6
12	emb\|CR385065.21\| Zebrafish DNA sequence from clone CH211-232F6 i...	42	1.6
13	gb\|U41559.2\| Caenorhabditis elegans cosmid C26B2, complete sequence	42	1.6
14	ref\|XM_939077.1\| PREDICTED: Homo sapiens chromosome 18 open read...	42	1.6
15	ref\|XM_928362.1\| PREDICTED: Homo sapiens chromosome 18 open read...	42	1.6
16	gb\|AC159808.2\| Mus musculus BAC clone RP24-357G23 from chromosom...	42	1.6
17	emb\|BX119907.8\| Zebrafish DNA sequence from clone CH211-208D14 i...	42	1.6
18	dbj\|AP005326.2\| Homo sapiens genomic DNA, chromosome 18 clone:RP...	42	1.6
19	dbj\|AP001496.4\| Homo sapiens genomic DNA, chromosome 18 clone:RP...	42	1.6
20	gb\|AC172877.1\| Brassica rapa subsp. pekinensis clone KBrH042F19,...	42	1.6
21	ref\|NM_001036870.1\| Arabidopsis thaliana unknown protein AT5G268...	40	6.4
22	ref\|NM_122567.2\| Arabidopsis thaliana unknown protein AT5G26850 ...	40	6.4
23	ref\|NM_001036871.1\| Arabidopsis thaliana unknown protein AT5G268...	40	6.4
24	gb\|AC164620.5\| Mus musculus BAC clone RP23-64H20 from chromosome...	40	6.4
25	ref\|XM_724868.1\| Plasmodium yoelii yoelii str. 17XNL rhoptry pro...	40	6.4
26	gb\|BT010590.1\| Arabidopsis thaliana At5g26850 gene, complete cds	40	6.4
27	ref\|XM_663104.1\| Cryptosporidium hominis TU502 hypothetical prot...	40	6.4
28	gb\|AC154559.2\| Mus musculus BAC clone RP23-399P3 from chromosome...	40	6.4
29	gb\|AE014822.1\| Plasmodium falciparum 3D7 chromosome 14 section 7...	40	6.4
30	emb\|CR356224.5\| Zebrafish DNA sequence from clone DKEY-17P16 in ...	40	6.4
31	gb\|AC010026.7\| Drosophila melanogaster 3L BAC RP98-1I24 (Roswell...	40	6.4
32	emb\|AL844587.19\| Zebrafish DNA sequence from clone DKEY-7E14 in ...	40	6.4
33	gb\|AE003849.1\| Xylella fastidiosa 9a5c, complete genome	40	6.4
34	gb\|AC008860.7\| Homo sapiens chromosome 5 clone CTD-2185A1, compl...	40	6.4
35	gb\|AE017340.1\| Idiomarina loihiensis L2TR, complete genome	40	6.4
36	gb\|AC016612.6\| Homo sapiens chromosome 5 clone CTD-2197M16, comp...	40	6.4
37	gb\|AF007270.1\|F2P16 Arabidopsis thaliana BAC F2P16, complete seq...	40	6.4
38	gb\|AF212831.2\|AF212831 Homo sapiens chromosome 21 clone BAC R-45...	40	6.4
39	gb\|AF130359.3\|AF130359 Homo sapiens chromosome 21 clone PAC K156...	40	6.4
40	gb\|AC112204.2\| Homo sapiens chromosome 5 clone RP11-79C6, comple...	40	6.4
41	dbj\|BS000031.1\| Pan troglodytes chromosome 22 clone:PTB-082B23, ...	40	6.4
42	emb\|AL954686.9\| Mouse DNA sequence from clone RP23-167L6 on chro...	40	6.4
43	dbj\|AK117216.1\| Arabidopsis thaliana At5g26850 mRNA for unknown ...	40	6.4
44	emb\|AL163213.2\|HS21C013 Homo sapiens chromosome 21 segment HS21C013	40	6.4
45	emb\|AL121841.5\|CNS01DSS Human chromosome 14 DNA sequence BAC R-8...	40	6.4
46	gb\|AE003468.3\| Drosophila melanogaster chromosome 3L, section 2 ...	40	6.4
47	emb\|CT009541.12\| Mouse DNA sequence from clone RP23-56C21 on chr...	40	6.4
48	emb\|AL808133.17\| Mouse DNA sequence from clone RP23-457N24 on ch...	40	6.4
49	emb\|AJ850059.1\| Sphingopyxis macrogoltabida orf1, ahpI3 gene, ah...	40	6.4
50	gb\|AC141646.4\| Mus musculus BAC clone RP23-84E4 from chromosome ...	40	6.4
51	emb\|AL844489.6\| Mouse DNA sequence from clone RP23-101P8 on chro...	40	6.4
52	emb\|AL451076.14\| Mouse DNA sequence from clone RP23-43O20 on chr...	40	6.4
53	dbj\|AP003778.3\| Homo sapiens genomic DNA, chromosome 11q clone:R...	40	6.4
54	dbj\|AP002780.3\| Homo sapiens genomic DNA, chromosome 11q, clone:...	40	6.4

>ref|NM_189191.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 3582

 Score =  456 bits (230), Expect = e-125
 Identities = 407/466 (87%)
 Strand = Plus / Plus

                                                                        
Query: 3    atgatgttttcttcgtatctggatacaatattcatggctctgtagttgcgcagggaaatc 62
            ||||||| |||||  |||||||||| |||||| |||||||||||||||| ||||||||||
Sbjct: 635  atgatgtcttctttctatctggatataatatttatggctctgtagttgcacagggaaatc 694

                                                                        
Query: 63   caatcttgggagttcacctgtatttatattcaaatgatgtaaaggaggttccttgctcgc 122
            ||||||||||||||||||| ||||||||||||||||| ||||  ||||| |||||  | |
Sbjct: 695  caatcttgggagttcacctttatttatattcaaatgacgtaacagaggtgccttgtccac 754

                                                                        
Query: 123  aaggtttgatcgatgcacccagggaaggtgctctttgccatgcagtatctggtgcggatg 182
            || || | |  ||||||||||| |||||||||||||||||||||||||||||||| ||||
Sbjct: 755  aaagtattagtgatgcacccagagaaggtgctctttgccatgcagtatctggtgctgatg 814

                                                                        
Query: 183  ggaagttctcatttagatcaatgccctgtggtagctatgatctgttgccatactacagag 242
            | |||||| | ||||| ||  | || |||||||||||||| |||||||| ||||||| ||
Sbjct: 815  gaaagttcacgtttagttcgttaccttgtggtagctatgagctgttgccgtactacaaag 874

                                                                        
Query: 243  gggaaaacactgtttttgatgtttcaccttcttcattacatgtttctgttgagcacagtc 302
            ||||||| |||||||||||||| || ||  ||||| | | ||||||||||||||||||||
Sbjct: 875  gggaaaatactgtttttgatgtctctcccccttcactgcttgtttctgttgagcacagtc 934

                                                                        
Query: 303  acatgacaatcccccaaaaattccaggttactgggttttctgttggtggtcatgttgttg 362
            | ||||| ||||||||||| |||||||||||||||||||||||||| || | ||||||||
Sbjct: 935  atatgactatcccccaaaagttccaggttactgggttttctgttggagggcgtgttgttg 994

                                                                        
Query: 363  atggctatgatgctggcattgaaggtgccaaggttataattgatggtcagttgagagctg 422
            |||| |||| ||||||  | |||||||| || |||||  | |||||||||||||||||||
Sbjct: 995  atgggtatggtgctggtgtggaaggtgctaatgttatcgtggatggtcagttgagagctg 1054

                                                          
Query: 423  taacagataatctcgggtattacagacttgatcaggttacatccaa 468
            ||||||| ||||| |||||||||||||||||||||||||| |||||
Sbjct: 1055 taacagacaatcttgggtattacagacttgatcaggttacctccaa 1100

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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score =  145 bits (73), Expect = 2e-31
 Identities = 121/137 (88%)
 Strand = Plus / Minus

                                                                            
Query: 54       agggaaatccaatcttgggagttcacctgtatttatattcaaatgatgtaaaggaggttc 113
                |||||||||||||||||||||||||||| ||||||||||||||||| ||||  ||||| |
Sbjct: 11033206 agggaaatccaatcttgggagttcacctttatttatattcaaatgacgtaacagaggtgc 11033147

                                                                            
Query: 114      cttgctcgcaaggtttgatcgatgcacccagggaaggtgctctttgccatgcagtatctg 173
                ||||  | ||| || | |  ||||||||||| ||||||||||||||||||||||||||||
Sbjct: 11033146 cttgtccacaaagtattagtgatgcacccagagaaggtgctctttgccatgcagtatctg 11033087

                                 
Query: 174      gtgcggatgggaagttc 190
                |||| ||||| ||||||
Sbjct: 11033086 gtgctgatggaaagttc 11033070



 Score =  145 bits (73), Expect = 2e-31
 Identities = 118/133 (88%)
 Strand = Plus / Minus

                                                                            
Query: 327      aggttactgggttttctgttggtggtcatgttgttgatggctatgatgctggcattgaag 386
                |||||||||||||||||||||| || | |||||||||||| |||| ||||||  | ||||
Sbjct: 11031679 aggttactgggttttctgttggagggcgtgttgttgatgggtatggtgctggtgtggaag 11031620

                                                                            
Query: 387      gtgccaaggttataattgatggtcagttgagagctgtaacagataatctcgggtattaca 446
                |||| || |||||  | |||||||||||||||||||||||||| ||||| ||||||||||
Sbjct: 11031619 gtgctaatgttatcgtggatggtcagttgagagctgtaacagacaatcttgggtattaca 11031560

                             
Query: 447      gacttgatcaggt 459
                |||||||||||||
Sbjct: 11031559 gacttgatcaggt 11031547



 Score =  125 bits (63), Expect = 1e-25
 Identities = 105/119 (88%)
 Strand = Plus / Minus

                                                                            
Query: 212      ggtagctatgatctgttgccatactacagaggggaaaacactgtttttgatgtttcacct 271
                ||||||||||| |||||||| ||||||| ||||||||| |||||||||||||| || || 
Sbjct: 11032221 ggtagctatgagctgttgccgtactacaaaggggaaaatactgtttttgatgtctctccc 11032162

                                                                           
Query: 272      tcttcattacatgtttctgttgagcacagtcacatgacaatcccccaaaaattccaggt 330
                 ||||| | | ||||||||||||||||||||| ||||| ||||||||||| ||||||||
Sbjct: 11032161 ccttcactgcttgtttctgttgagcacagtcatatgactatcccccaaaagttccaggt 11032103



 Score = 60.0 bits (30), Expect = 7e-06
 Identities = 48/54 (88%)
 Strand = Plus / Minus

                                                                      
Query: 3        atgatgttttcttcgtatctggatacaatattcatggctctgtagttgcgcagg 56
                ||||||| |||||  |||||||||| |||||| |||||||||||||||| ||||
Sbjct: 11033395 atgatgtcttctttctatctggatataatatttatggctctgtagttgcacagg 11033342

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>dbj|AP003578.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0682B08
          Length = 138376

 Score =  145 bits (73), Expect = 2e-31
 Identities = 121/137 (88%)
 Strand = Plus / Minus

                                                                         
Query: 54    agggaaatccaatcttgggagttcacctgtatttatattcaaatgatgtaaaggaggttc 113
             |||||||||||||||||||||||||||| ||||||||||||||||| ||||  ||||| |
Sbjct: 62088 agggaaatccaatcttgggagttcacctttatttatattcaaatgacgtaacagaggtgc 62029

                                                                         
Query: 114   cttgctcgcaaggtttgatcgatgcacccagggaaggtgctctttgccatgcagtatctg 173
             ||||  | ||| || | |  ||||||||||| ||||||||||||||||||||||||||||
Sbjct: 62028 cttgtccacaaagtattagtgatgcacccagagaaggtgctctttgccatgcagtatctg 61969

                              
Query: 174   gtgcggatgggaagttc 190
             |||| ||||| ||||||
Sbjct: 61968 gtgctgatggaaagttc 61952



 Score =  145 bits (73), Expect = 2e-31
 Identities = 118/133 (88%)
 Strand = Plus / Minus

                                                                         
Query: 327   aggttactgggttttctgttggtggtcatgttgttgatggctatgatgctggcattgaag 386
             |||||||||||||||||||||| || | |||||||||||| |||| ||||||  | ||||
Sbjct: 60561 aggttactgggttttctgttggagggcgtgttgttgatgggtatggtgctggtgtggaag 60502

                                                                         
Query: 387   gtgccaaggttataattgatggtcagttgagagctgtaacagataatctcgggtattaca 446
             |||| || |||||  | |||||||||||||||||||||||||| ||||| ||||||||||
Sbjct: 60501 gtgctaatgttatcgtggatggtcagttgagagctgtaacagacaatcttgggtattaca 60442

                          
Query: 447   gacttgatcaggt 459
             |||||||||||||
Sbjct: 60441 gacttgatcaggt 60429



 Score =  125 bits (63), Expect = 1e-25
 Identities = 105/119 (88%)
 Strand = Plus / Minus

                                                                         
Query: 212   ggtagctatgatctgttgccatactacagaggggaaaacactgtttttgatgtttcacct 271
             ||||||||||| |||||||| ||||||| ||||||||| |||||||||||||| || || 
Sbjct: 61103 ggtagctatgagctgttgccgtactacaaaggggaaaatactgtttttgatgtctctccc 61044

                                                                        
Query: 272   tcttcattacatgtttctgttgagcacagtcacatgacaatcccccaaaaattccaggt 330
              ||||| | | ||||||||||||||||||||| ||||| ||||||||||| ||||||||
Sbjct: 61043 ccttcactgcttgtttctgttgagcacagtcatatgactatcccccaaaagttccaggt 60985



 Score = 60.0 bits (30), Expect = 7e-06
 Identities = 48/54 (88%)
 Strand = Plus / Minus

                                                                   
Query: 3     atgatgttttcttcgtatctggatacaatattcatggctctgtagttgcgcagg 56
             ||||||| |||||  |||||||||| |||||| |||||||||||||||| ||||
Sbjct: 62277 atgatgtcttctttctatctggatataatatttatggctctgtagttgcacagg 62224

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>dbj|AP002883.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
              clone:P0487H02
          Length = 145491

 Score =  145 bits (73), Expect = 2e-31
 Identities = 121/137 (88%)
 Strand = Plus / Minus

                                                                          
Query: 54     agggaaatccaatcttgggagttcacctgtatttatattcaaatgatgtaaaggaggttc 113
              |||||||||||||||||||||||||||| ||||||||||||||||| ||||  ||||| |
Sbjct: 136048 agggaaatccaatcttgggagttcacctttatttatattcaaatgacgtaacagaggtgc 135989

                                                                          
Query: 114    cttgctcgcaaggtttgatcgatgcacccagggaaggtgctctttgccatgcagtatctg 173
              ||||  | ||| || | |  ||||||||||| ||||||||||||||||||||||||||||
Sbjct: 135988 cttgtccacaaagtattagtgatgcacccagagaaggtgctctttgccatgcagtatctg 135929

                               
Query: 174    gtgcggatgggaagttc 190
              |||| ||||| ||||||
Sbjct: 135928 gtgctgatggaaagttc 135912



 Score =  145 bits (73), Expect = 2e-31
 Identities = 118/133 (88%)
 Strand = Plus / Minus

                                                                          
Query: 327    aggttactgggttttctgttggtggtcatgttgttgatggctatgatgctggcattgaag 386
              |||||||||||||||||||||| || | |||||||||||| |||| ||||||  | ||||
Sbjct: 134521 aggttactgggttttctgttggagggcgtgttgttgatgggtatggtgctggtgtggaag 134462

                                                                          
Query: 387    gtgccaaggttataattgatggtcagttgagagctgtaacagataatctcgggtattaca 446
              |||| || |||||  | |||||||||||||||||||||||||| ||||| ||||||||||
Sbjct: 134461 gtgctaatgttatcgtggatggtcagttgagagctgtaacagacaatcttgggtattaca 134402

                           
Query: 447    gacttgatcaggt 459
              |||||||||||||
Sbjct: 134401 gacttgatcaggt 134389



 Score =  125 bits (63), Expect = 1e-25
 Identities = 105/119 (88%)
 Strand = Plus / Minus

                                                                          
Query: 212    ggtagctatgatctgttgccatactacagaggggaaaacactgtttttgatgtttcacct 271
              ||||||||||| |||||||| ||||||| ||||||||| |||||||||||||| || || 
Sbjct: 135063 ggtagctatgagctgttgccgtactacaaaggggaaaatactgtttttgatgtctctccc 135004

                                                                         
Query: 272    tcttcattacatgtttctgttgagcacagtcacatgacaatcccccaaaaattccaggt 330
               ||||| | | ||||||||||||||||||||| ||||| ||||||||||| ||||||||
Sbjct: 135003 ccttcactgcttgtttctgttgagcacagtcatatgactatcccccaaaagttccaggt 134945



 Score = 60.0 bits (30), Expect = 7e-06
 Identities = 48/54 (88%)
 Strand = Plus / Minus

                                                                    
Query: 3      atgatgttttcttcgtatctggatacaatattcatggctctgtagttgcgcagg 56
              ||||||| |||||  |||||||||| |||||| |||||||||||||||| ||||
Sbjct: 136237 atgatgtcttctttctatctggatataatatttatggctctgtagttgcacagg 136184

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>gb|BT014138.1| Lycopersicon esculentum clone 133257F, mRNA sequence
          Length = 1434

 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 32/33 (96%)
 Strand = Plus / Plus

                                             
Query: 245  gaaaacactgtttttgatgtttcaccttcttca 277
            |||||||| ||||||||||||||||||||||||
Sbjct: 974  gaaaacaccgtttttgatgtttcaccttcttca 1006



 Score = 48.1 bits (24), Expect = 0.026
 Identities = 57/68 (83%)
 Strand = Plus / Plus

                                                                       
Query: 11  ttcttcgtatctggatacaatattcatggctctgtagttgcgcagggaaatccaatcttg 70
           ||||| |||||||| ||  |||||| ||| ||||| ||||| ||||||||||| ||  ||
Sbjct: 728 ttctttgtatctggttatgatattcgtggatctgtggttgctcagggaaatcccatactg 787

                   
Query: 71  ggagttca 78
           ||||||||
Sbjct: 788 ggagttca 795



 Score = 42.1 bits (21), Expect = 1.6
 Identities = 36/41 (87%)
 Strand = Plus / Plus

                                                     
Query: 326  caggttactgggttttctgttggtggtcatgttgttgatgg 366
            ||||| ||||| ||||||||||| |||| ||| ||||||||
Sbjct: 1055 caggtcactggattttctgttgggggtcgtgtggttgatgg 1095

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>gb|AE017143.1| Haemophilus ducreyi strain 35000HP complete genome
          Length = 1698955

 Score = 50.1 bits (25), Expect = 0.007
 Identities = 28/29 (96%)
 Strand = Plus / Minus

                                            
Query: 345     ttggtggtcatgttgttgatggctatgat 373
               ||||||||||||||||||||||| |||||
Sbjct: 1680884 ttggtggtcatgttgttgatggcaatgat 1680856

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>gb|AC102320.6| Mus musculus chromosome 1, clone RP24-459A11, complete sequence
          Length = 121264

 Score = 44.1 bits (22), Expect = 0.41
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 83     tatttatattcaaatgatgtaa 104
              ||||||||||||||||||||||
Sbjct: 119222 tatttatattcaaatgatgtaa 119201

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>gb|AC011592.5| Homo sapiens chromosome 3, clone RP11-42F12, complete sequence
          Length = 152132

 Score = 44.1 bits (22), Expect = 0.41
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 88    atattcaaatgatgtaaaggag 109
             ||||||||||||||||||||||
Sbjct: 39433 atattcaaatgatgtaaaggag 39454

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>gb|AC117397.2| Homo sapiens 3 BAC RP11-92D20 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 128398

 Score = 44.1 bits (22), Expect = 0.41
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 88     atattcaaatgatgtaaaggag 109
              ||||||||||||||||||||||
Sbjct: 124815 atattcaaatgatgtaaaggag 124836

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>gb|AC131661.4| Mus musculus BAC clone RP23-251N10 from 1, complete sequence
          Length = 211188

 Score = 44.1 bits (22), Expect = 0.41
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 83    tatttatattcaaatgatgtaa 104
             ||||||||||||||||||||||
Sbjct: 35583 tatttatattcaaatgatgtaa 35562

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>ref|XM_650274.1| Entamoeba histolytica HM-1:IMSS villidin (30.t00030) partial mRNA
          Length = 4410

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 84   atttatattcaaatgatgtaa 104
            |||||||||||||||||||||
Sbjct: 3938 atttatattcaaatgatgtaa 3958

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>emb|CR385065.21| Zebrafish DNA sequence from clone CH211-232F6 in linkage group 6,
             complete sequence
          Length = 194459

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                          
Query: 255   tttttgatgtttcaccttcttcattacat 283
             ||||||||||||||||||| ||| |||||
Sbjct: 82986 tttttgatgtttcaccttcatcagtacat 82958

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>gb|U41559.2| Caenorhabditis elegans cosmid C26B2, complete sequence
          Length = 41511

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 397   tataattgatggtcagttgag 417
             |||||||||||||||||||||
Sbjct: 38159 tataattgatggtcagttgag 38139

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>ref|XM_939077.1| PREDICTED: Homo sapiens chromosome 18 open reading frame 18
           (C18orf18), mRNA
          Length = 3130

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 241 aggggaaaacactgtttttga 261
           |||||||||||||||||||||
Sbjct: 46  aggggaaaacactgtttttga 26

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>ref|XM_928362.1| PREDICTED: Homo sapiens chromosome 18 open reading frame 18
           (C18orf18), mRNA
          Length = 3130

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 241 aggggaaaacactgtttttga 261
           |||||||||||||||||||||
Sbjct: 46  aggggaaaacactgtttttga 26

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>gb|AC159808.2| Mus musculus BAC clone RP24-357G23 from chromosome 12, complete
             sequence
          Length = 155139

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 78    acctgtatttatattcaaatg 98
             |||||||||||||||||||||
Sbjct: 28946 acctgtatttatattcaaatg 28926

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>emb|BX119907.8| Zebrafish DNA sequence from clone CH211-208D14 in linkage group 6,
              complete sequence
          Length = 181060

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                           
Query: 255    tttttgatgtttcaccttcttcattacat 283
              ||||||||||||||||||| ||| |||||
Sbjct: 127210 tttttgatgtttcaccttcatcagtacat 127238

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>dbj|AP005326.2| Homo sapiens genomic DNA, chromosome 18 clone:RP11-147K23, complete
           sequence
          Length = 65302

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 241 aggggaaaacactgtttttga 261
           |||||||||||||||||||||
Sbjct: 82  aggggaaaacactgtttttga 102

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>dbj|AP001496.4| Homo sapiens genomic DNA, chromosome 18 clone:RP11-835E18, complete
              sequence
          Length = 179358

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 241    aggggaaaacactgtttttga 261
              |||||||||||||||||||||
Sbjct: 102578 aggggaaaacactgtttttga 102598

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>gb|AC172877.1| Brassica rapa subsp. pekinensis clone KBrH042F19, complete sequence
          Length = 108651

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                     
Query: 54   agggaaatccaatcttgggagttca 78
            |||||||||||||| ||||||||||
Sbjct: 1031 agggaaatccaatcctgggagttca 1055

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>ref|NM_001036870.1| Arabidopsis thaliana unknown protein AT5G26850 transcript variant
           AT5G26850.2 mRNA, complete cds
          Length = 3041

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 29/31 (93%), Gaps = 2/31 (6%)
 Strand = Plus / Minus

                                          
Query: 249 acactgtttttgatgtt--tcaccttcttca 277
           |||||||||||||||||  ||||||||||||
Sbjct: 580 acactgtttttgatgttcctcaccttcttca 550

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>ref|NM_122567.2| Arabidopsis thaliana unknown protein AT5G26850 transcript variant
           AT5G26850.1 mRNA, complete cds
          Length = 3092

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 29/31 (93%), Gaps = 2/31 (6%)
 Strand = Plus / Minus

                                          
Query: 249 acactgtttttgatgtt--tcaccttcttca 277
           |||||||||||||||||  ||||||||||||
Sbjct: 631 acactgtttttgatgttcctcaccttcttca 601

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>ref|NM_001036871.1| Arabidopsis thaliana unknown protein AT5G26850 transcript variant
           AT5G26850.3 mRNA, complete cds
          Length = 3100

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 29/31 (93%), Gaps = 2/31 (6%)
 Strand = Plus / Minus

                                          
Query: 249 acactgtttttgatgtt--tcaccttcttca 277
           |||||||||||||||||  ||||||||||||
Sbjct: 639 acactgtttttgatgttcctcaccttcttca 609

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>gb|AC164620.5| Mus musculus BAC clone RP23-64H20 from chromosome 18, complete sequence
          Length = 182838

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 237   acagaggggaaaacactgtt 256
             ||||||||||||||||||||
Sbjct: 77121 acagaggggaaaacactgtt 77140

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>ref|XM_724868.1| Plasmodium yoelii yoelii str. 17XNL rhoptry protein (PY02104) partial
            mRNA
          Length = 7984

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 256  ttttgatgtttcaccttctt 275
            ||||||||||||||||||||
Sbjct: 2103 ttttgatgtttcaccttctt 2084

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>gb|BT010590.1| Arabidopsis thaliana At5g26850 gene, complete cds
          Length = 2913

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 29/31 (93%), Gaps = 2/31 (6%)
 Strand = Plus / Minus

                                          
Query: 249 acactgtttttgatgtt--tcaccttcttca 277
           |||||||||||||||||  ||||||||||||
Sbjct: 534 acactgtttttgatgttcctcaccttcttca 504

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>ref|XM_663104.1| Cryptosporidium hominis TU502 hypothetical protein, partial mRNA
          Length = 2316

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 274 ttcattacatgtttctgttg 293
           ||||||||||||||||||||
Sbjct: 501 ttcattacatgtttctgttg 482

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>gb|AC154559.2| Mus musculus BAC clone RP23-399P3 from chromosome 14, complete sequence
          Length = 198078

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 236   tacagaggggaaaacactgt 255
             ||||||||||||||||||||
Sbjct: 71182 tacagaggggaaaacactgt 71163

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>gb|AE014822.1| Plasmodium falciparum 3D7 chromosome 14 section 7 of 13 of the complete
              sequence
          Length = 253924

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 94     aaatgatgtaaaggaggttc 113
              ||||||||||||||||||||
Sbjct: 253032 aaatgatgtaaaggaggttc 253051

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>emb|CR356224.5| Zebrafish DNA sequence from clone DKEY-17P16 in linkage group 12,
              complete sequence
          Length = 112893

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 308    acaatcccccaaaaattcca 327
              ||||||||||||||||||||
Sbjct: 109055 acaatcccccaaaaattcca 109074

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>gb|AC010026.7| Drosophila melanogaster 3L BAC RP98-1I24 (Roswell Park Cancer Institute
              Drosophila BAC Library) complete sequence
          Length = 179776

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 241    aggggaaaacactgtttttg 260
              ||||||||||||||||||||
Sbjct: 124582 aggggaaaacactgtttttg 124601

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>emb|AL844587.19| Zebrafish DNA sequence from clone DKEY-7E14 in linkage group 12,
             complete sequence
          Length = 254964

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 308   acaatcccccaaaaattcca 327
             ||||||||||||||||||||
Sbjct: 45166 acaatcccccaaaaattcca 45147

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>gb|AE003849.1| Xylella fastidiosa 9a5c, complete genome
          Length = 2679306

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 358     tgttgatggctatgatgctg 377
               ||||||||||||||||||||
Sbjct: 1109821 tgttgatggctatgatgctg 1109840

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>gb|AC008860.7| Homo sapiens chromosome 5 clone CTD-2185A1, complete sequence
          Length = 105885

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 382   tgaaggtgccaaggttataa 401
             ||||||||||||||||||||
Sbjct: 61247 tgaaggtgccaaggttataa 61228

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>gb|AE017340.1| Idiomarina loihiensis L2TR, complete genome
          Length = 2839318

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 370   tgatgctggcattgaaggtg 389
             ||||||||||||||||||||
Sbjct: 89670 tgatgctggcattgaaggtg 89689

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>gb|AC016612.6| Homo sapiens chromosome 5 clone CTD-2197M16, complete sequence
          Length = 179513

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 382    tgaaggtgccaaggttataa 401
              ||||||||||||||||||||
Sbjct: 164632 tgaaggtgccaaggttataa 164613

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>gb|AF007270.1|F2P16 Arabidopsis thaliana BAC F2P16, complete sequence
          Length = 110946

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 29/31 (93%), Gaps = 2/31 (6%)
 Strand = Plus / Minus

                                            
Query: 249   acactgtttttgatgtt--tcaccttcttca 277
             |||||||||||||||||  ||||||||||||
Sbjct: 48424 acactgtttttgatgttcctcaccttcttca 48394

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>gb|AF212831.2|AF212831 Homo sapiens chromosome 21 clone BAC R-45M19 map 21q21, complete
             sequence
          Length = 159255

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 366   gctatgatgctggcattgaaggtg 389
             |||||| |||||||||||||||||
Sbjct: 38638 gctatgctgctggcattgaaggtg 38661

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>gb|AF130359.3|AF130359 Homo sapiens chromosome 21 clone PAC K15697 map 21q21, complete sequence
          Length = 146412

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 366    gctatgatgctggcattgaaggtg 389
              |||||| |||||||||||||||||
Sbjct: 130423 gctatgctgctggcattgaaggtg 130446

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>gb|AC112204.2| Homo sapiens chromosome 5 clone RP11-79C6, complete sequence
          Length = 165304

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 382    tgaaggtgccaaggttataa 401
              ||||||||||||||||||||
Sbjct: 129369 tgaaggtgccaaggttataa 129388

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>dbj|BS000031.1| Pan troglodytes chromosome 22 clone:PTB-082B23, map 22, complete
             sequences
          Length = 218696

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 366   gctatgatgctggcattgaaggtg 389
             |||||| |||||||||||||||||
Sbjct: 40255 gctatgctgctggcattgaaggtg 40278

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>emb|AL954686.9| Mouse DNA sequence from clone RP23-167L6 on chromosome X, complete
             sequence
          Length = 78045

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 226   gttgccatactacagagggg 245
             ||||||||||||||||||||
Sbjct: 61037 gttgccatactacagagggg 61056

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>dbj|AK117216.1| Arabidopsis thaliana At5g26850 mRNA for unknown protein, complete
           cds, clone: RAFL16-76-N10
          Length = 3204

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 29/31 (93%), Gaps = 2/31 (6%)
 Strand = Plus / Minus

                                          
Query: 249 acactgtttttgatgtt--tcaccttcttca 277
           |||||||||||||||||  ||||||||||||
Sbjct: 610 acactgtttttgatgttcctcaccttcttca 580

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>emb|AL163213.2|HS21C013 Homo sapiens chromosome 21 segment HS21C013
          Length = 340000

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 366    gctatgatgctggcattgaaggtg 389
              |||||| |||||||||||||||||
Sbjct: 199301 gctatgctgctggcattgaaggtg 199324

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>emb|AL121841.5|CNS01DSS Human chromosome 14 DNA sequence BAC R-850C20 of library RPCI-11 from
             chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 207945

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 56    ggaaatccaatcttgggagt 75
             ||||||||||||||||||||
Sbjct: 40496 ggaaatccaatcttgggagt 40477

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>gb|AE003468.3| Drosophila melanogaster chromosome 3L, section 2 of 83 of the complete
              sequence
          Length = 307657

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 241    aggggaaaacactgtttttg 260
              ||||||||||||||||||||
Sbjct: 117741 aggggaaaacactgtttttg 117722

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>emb|CT009541.12| Mouse DNA sequence from clone RP23-56C21 on chromosome 14, complete
             sequence
          Length = 215157

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 236   tacagaggggaaaacactgt 255
             ||||||||||||||||||||
Sbjct: 20497 tacagaggggaaaacactgt 20478

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>emb|AL808133.17| Mouse DNA sequence from clone RP23-457N24 on chromosome X, complete
             sequence
          Length = 170192

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 226   gttgccatactacagagggg 245
             ||||||||||||||||||||
Sbjct: 28122 gttgccatactacagagggg 28141

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>emb|AJ850059.1| Sphingopyxis macrogoltabida orf1, ahpI3 gene, ahpG3 gene and gntR
            gene (partial), strain HXN-200
          Length = 3885

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 128  ttgatcgatgcacccagggaaggt 151
            |||||||||||||| |||||||||
Sbjct: 1974 ttgatcgatgcaccaagggaaggt 1951

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>gb|AC141646.4| Mus musculus BAC clone RP23-84E4 from chromosome 9, complete sequence
          Length = 193235

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 184    gaagttctcatttagatcaa 203
              ||||||||||||||||||||
Sbjct: 134424 gaagttctcatttagatcaa 134405

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>emb|AL844489.6| Mouse DNA sequence from clone RP23-101P8 on chromosome 2, complete
              sequence
          Length = 213549

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 77     cacctgtatttatattcaaa 96
              ||||||||||||||||||||
Sbjct: 206653 cacctgtatttatattcaaa 206672

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>emb|AL451076.14| Mouse DNA sequence from clone RP23-43O20 on chromosome X, complete
              sequence
          Length = 203581

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 226    gttgccatactacagagggg 245
              ||||||||||||||||||||
Sbjct: 182777 gttgccatactacagagggg 182796

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>dbj|AP003778.3| Homo sapiens genomic DNA, chromosome 11q clone:RP11-384C21, complete
             sequences
          Length = 183146

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 363   atggctatgatgctggcattgaag 386
             ||||||| ||||||||||||||||
Sbjct: 53772 atggctaagatgctggcattgaag 53749

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>dbj|AP002780.3| Homo sapiens genomic DNA, chromosome 11q, clone:RP11-648G9, complete
             sequence
          Length = 73990

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 363   atggctatgatgctggcattgaag 386
             ||||||| ||||||||||||||||
Sbjct: 73795 atggctaagatgctggcattgaag 73772


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,678,739
Number of Sequences: 3902068
Number of extensions: 4678739
Number of successful extensions: 116812
Number of sequences better than 10.0: 54
Number of HSP's better than 10.0 without gapping: 48
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 116651
Number of HSP's gapped (non-prelim): 167
length of query: 472
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 450
effective length of database: 17,147,199,772
effective search space: 7716239897400
effective search space used: 7716239897400
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result