ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl07g12 |
|---|---|
| Clone Library Name | barley_pub |
>COPB2_MOUSE (O55029) Coatomer subunit beta' (Beta'-coat protein) (Beta'-COP)| (p102) Length = 905 Score = 85.1 bits (209), Expect = 4e-17 Identities = 35/49 (71%), Positives = 46/49 (93%) Frame = +2 Query: 197 MPLRLEIKRKFAQRSERVKSVDLHPTEPWILASLYSGTLCIWDYQTQTM 343 MPLRL+IKRK RS+RVKSVDLHPTEPW+LASLY+G++C+W+++TQT+ Sbjct: 1 MPLRLDIKRKLTARSDRVKSVDLHPTEPWMLASLYNGSVCVWNHETQTL 49 Score = 31.6 bits (70), Expect = 0.51 Identities = 13/40 (32%), Positives = 23/40 (57%) Frame = +2 Query: 209 LEIKRKFAQRSERVKSVDLHPTEPWILASLYSGTLCIWDY 328 LE F S+ ++ + +HPT+P+IL S + +WD+ Sbjct: 89 LERVHMFEAHSDYIRCIAVHPTQPFILTSSDDMLIKLWDW 128
>COPB2_HUMAN (P35606) Coatomer subunit beta' (Beta'-coat protein) (Beta'-COP)| (p102) Length = 905 Score = 83.2 bits (204), Expect = 1e-16 Identities = 34/48 (70%), Positives = 45/48 (93%) Frame = +2 Query: 200 PLRLEIKRKFAQRSERVKSVDLHPTEPWILASLYSGTLCIWDYQTQTM 343 PLRL+IKRK RS+RVKSVDLHPTEPW+LASLY+G++C+W+++TQT+ Sbjct: 1 PLRLDIKRKLTARSDRVKSVDLHPTEPWMLASLYNGSVCVWNHETQTL 48 Score = 31.6 bits (70), Expect = 0.51 Identities = 13/40 (32%), Positives = 23/40 (57%) Frame = +2 Query: 209 LEIKRKFAQRSERVKSVDLHPTEPWILASLYSGTLCIWDY 328 LE F S+ ++ + +HPT+P+IL S + +WD+ Sbjct: 88 LERVHMFEAHSDYIRCIAVHPTQPFILTSSDDMLIKLWDW 127
>COPB2_BOVIN (P35605) Coatomer subunit beta' (Beta'-coat protein) (Beta'-COP)| (p102) Length = 905 Score = 83.2 bits (204), Expect = 1e-16 Identities = 34/48 (70%), Positives = 45/48 (93%) Frame = +2 Query: 200 PLRLEIKRKFAQRSERVKSVDLHPTEPWILASLYSGTLCIWDYQTQTM 343 PLRL+IKRK RS+RVKSVDLHPTEPW+LASLY+G++C+W+++TQT+ Sbjct: 1 PLRLDIKRKLTARSDRVKSVDLHPTEPWMLASLYNGSVCVWNHETQTL 48 Score = 31.6 bits (70), Expect = 0.51 Identities = 13/40 (32%), Positives = 23/40 (57%) Frame = +2 Query: 209 LEIKRKFAQRSERVKSVDLHPTEPWILASLYSGTLCIWDY 328 LE F S+ ++ + +HPT+P+IL S + +WD+ Sbjct: 88 LERVHMFEAHSDYIRCIAVHPTQPFILTSSDDMLIKLWDW 127
>COPB2_RAT (O35142) Coatomer subunit beta' (Beta'-coat protein) (Beta'-COP)| (p102) Length = 904 Score = 80.9 bits (198), Expect = 7e-16 Identities = 33/48 (68%), Positives = 44/48 (91%) Frame = +2 Query: 200 PLRLEIKRKFAQRSERVKSVDLHPTEPWILASLYSGTLCIWDYQTQTM 343 PLRL+IKRK S+RVKSVDLHPTEPW+LASLY+G++C+W+++TQT+ Sbjct: 1 PLRLDIKRKLTAMSDRVKSVDLHPTEPWMLASLYNGSVCVWNHETQTL 48 Score = 31.6 bits (70), Expect = 0.51 Identities = 13/40 (32%), Positives = 23/40 (57%) Frame = +2 Query: 209 LEIKRKFAQRSERVKSVDLHPTEPWILASLYSGTLCIWDY 328 LE F S+ ++ + +HPT+P+IL S + +WD+ Sbjct: 88 LERVHMFEAHSDYIRCIAVHPTQPFILTSSDDMLIKLWDW 127
>COPB2_CAEEL (Q20168) Probable coatomer subunit beta' (Beta'-coat protein)| (Beta'-COP) Length = 1000 Score = 73.9 bits (180), Expect = 9e-14 Identities = 31/49 (63%), Positives = 41/49 (83%) Frame = +2 Query: 197 MPLRLEIKRKFAQRSERVKSVDLHPTEPWILASLYSGTLCIWDYQTQTM 343 MPLRL++KRK RS+RVK VDLHP E W+LA+LY+G + IW+Y+TQT+ Sbjct: 1 MPLRLDVKRKLLARSDRVKCVDLHPVETWLLAALYNGNVHIWNYETQTL 49 Score = 29.6 bits (65), Expect = 1.9 Identities = 12/43 (27%), Positives = 26/43 (60%) Frame = +2 Query: 209 LEIKRKFAQRSERVKSVDLHPTEPWILASLYSGTLCIWDYQTQ 337 LE +F S+ ++S+ +HPT P++++S + +WD+ + Sbjct: 89 LERVHQFEAHSDYLRSLVVHPTLPYVISSSDDMLVKMWDWDNK 131
>COPB2_YEAST (P41811) Coatomer subunit beta' (Beta'-coat protein) (Beta'-COP)| Length = 889 Score = 67.0 bits (162), Expect = 1e-11 Identities = 25/45 (55%), Positives = 38/45 (84%) Frame = +2 Query: 203 LRLEIKRKFAQRSERVKSVDLHPTEPWILASLYSGTLCIWDYQTQ 337 ++L+IK+ F+ RS+RVK +D HPTEPW+L +LYSG + +W+Y+TQ Sbjct: 1 MKLDIKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQ 45 Score = 29.3 bits (64), Expect = 2.5 Identities = 9/35 (25%), Positives = 23/35 (65%) Frame = +2 Query: 227 FAQRSERVKSVDLHPTEPWILASLYSGTLCIWDYQ 331 F + ++S+ +HPT+P++L+ T+ +W+++ Sbjct: 93 FEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWE 127
>COPB2_SCHPO (O42937) Probable coatomer subunit beta' (Beta'-coat protein)| (Beta'-COP) Length = 796 Score = 65.5 bits (158), Expect = 3e-11 Identities = 26/47 (55%), Positives = 37/47 (78%) Frame = +2 Query: 203 LRLEIKRKFAQRSERVKSVDLHPTEPWILASLYSGTLCIWDYQTQTM 343 +RL+ +RK +ERVK+VD HPTEPW++AS Y+G + IW+Y TQT+ Sbjct: 2 MRLDFQRKLLSHTERVKAVDFHPTEPWVIASHYNGQVGIWNYNTQTL 48
>COPB2_DROME (O62621) Coatomer subunit beta' (Beta'-coat protein) (Beta'-COP)| Length = 914 Score = 65.5 bits (158), Expect = 3e-11 Identities = 28/49 (57%), Positives = 38/49 (77%) Frame = +2 Query: 197 MPLRLEIKRKFAQRSERVKSVDLHPTEPWILASLYSGTLCIWDYQTQTM 343 MPL+L+IKR+ RS+RVK VDLHP EPW+L +LY+G + I +Y+ Q M Sbjct: 1 MPLKLDIKRRLTSRSDRVKCVDLHPAEPWMLCALYNGHVHIMNYENQQM 49 Score = 28.5 bits (62), Expect = 4.3 Identities = 11/41 (26%), Positives = 23/41 (56%) Frame = +2 Query: 209 LEIKRKFAQRSERVKSVDLHPTEPWILASLYSGTLCIWDYQ 331 LE F S+ ++ + +HPT+P +L S + +W+++ Sbjct: 89 LEKVHSFEAHSDYLRCIAVHPTQPLVLTSSDDMLIKLWNWE 129
>COPA_YEAST (P53622) Coatomer subunit alpha (Alpha-coat protein) (Alpha-COP)| Length = 1201 Score = 48.9 bits (115), Expect = 3e-06 Identities = 17/45 (37%), Positives = 30/45 (66%) Frame = +2 Query: 209 LEIKRKFAQRSERVKSVDLHPTEPWILASLYSGTLCIWDYQTQTM 343 +++ KF +S R K + HP+ PW+L +L+S T+ +WDY+ T+ Sbjct: 1 MKMLTKFESKSTRAKGIAFHPSRPWVLVALFSSTIQLWDYRMGTL 45
>COPA_HUMAN (P53621) Coatomer subunit alpha (Alpha-coat protein) (Alpha-COP)| (HEPCOP) (HEP-COP) [Contains: Xenin (Xenopsin-related peptide); Proxenin] Length = 1224 Score = 48.9 bits (115), Expect = 3e-06 Identities = 19/40 (47%), Positives = 27/40 (67%) Frame = +2 Query: 224 KFAQRSERVKSVDLHPTEPWILASLYSGTLCIWDYQTQTM 343 KF +S RVK + HP PWIL SL++G + +WDY+ T+ Sbjct: 4 KFETKSARVKGLSFHPKRPWILTSLHNGVIQLWDYRMCTL 43 Score = 27.7 bits (60), Expect = 7.3 Identities = 9/31 (29%), Positives = 20/31 (64%) Frame = +2 Query: 248 VKSVDLHPTEPWILASLYSGTLCIWDYQTQT 340 +++ H PWIL++ T+ +W++Q++T Sbjct: 96 IRTTFFHHEYPWILSASDDQTIRVWNWQSRT 126
>COPA_BOVIN (Q27954) Coatomer subunit alpha (Alpha-coat protein) (Alpha-COP)| (HEPCOP) (HEP-COP) [Contains: Xenin (Xenopsin-related peptide); Proxenin] Length = 1224 Score = 48.9 bits (115), Expect = 3e-06 Identities = 19/40 (47%), Positives = 27/40 (67%) Frame = +2 Query: 224 KFAQRSERVKSVDLHPTEPWILASLYSGTLCIWDYQTQTM 343 KF +S RVK + HP PWIL SL++G + +WDY+ T+ Sbjct: 4 KFETKSARVKGLSFHPKRPWILTSLHNGVIQLWDYRMCTL 43 Score = 27.7 bits (60), Expect = 7.3 Identities = 9/31 (29%), Positives = 20/31 (64%) Frame = +2 Query: 248 VKSVDLHPTEPWILASLYSGTLCIWDYQTQT 340 +++ H PWIL++ T+ +W++Q++T Sbjct: 96 IRTTFFHHEYPWILSASDDQTIRVWNWQSRT 126
>COPA_CANFA (P40765) Coatomer subunit alpha (Alpha-coat protein) (Alpha-COP)| (HEPCOP) (HEP-COP) [Contains: Xenin (Xenopsin-related peptide); Proxenin] (Fragment) Length = 35 Score = 38.5 bits (88), Expect = 0.004 Identities = 15/30 (50%), Positives = 20/30 (66%) Frame = +2 Query: 224 KFAQRSERVKSVDLHPTEPWILASLYSGTL 313 KF +S RVK + HP PWIL SL++G + Sbjct: 4 KFETKSARVKGLSFHPKRPWILTSLHNGVI 33
>Y143_SYNY3 (P74442) Hypothetical WD-repeat protein slr0143| Length = 1191 Score = 34.3 bits (77), Expect = 0.078 Identities = 14/32 (43%), Positives = 20/32 (62%) Frame = +2 Query: 233 QRSERVKSVDLHPTEPWILASLYSGTLCIWDY 328 QR E ++SV LHPT P + A G L +W++ Sbjct: 995 QRKEPIRSVSLHPTLPQLAAGDEQGNLTLWNF 1026
>SKB15_SCHPO (O74453) Shk1 kinase-binding protein 15| Length = 341 Score = 31.6 bits (70), Expect = 0.51 Identities = 13/38 (34%), Positives = 24/38 (63%) Frame = +2 Query: 212 EIKRKFAQRSERVKSVDLHPTEPWILASLYSGTLCIWD 325 +I +F +RVKSV +P + +++ + G++CIWD Sbjct: 230 KILHEFTAHKKRVKSV--YPVDDYLITASSDGSVCIWD 265
>WDR23_HUMAN (Q8TEB1) WD-repeat protein 23| Length = 546 Score = 29.6 bits (65), Expect = 1.9 Identities = 13/39 (33%), Positives = 20/39 (51%) Frame = +2 Query: 215 IKRKFAQRSERVKSVDLHPTEPWILASLYSGTLCIWDYQ 331 I +K V+ V HP E I++S + G L +W Y+ Sbjct: 475 IVKKLTNHKACVRDVSWHPFEEKIVSSSWDGNLRLWQYR 513
>KAD_METCA (Q606F1) Adenylate kinase (EC 2.7.4.3) (ATP-AMP transphosphorylase)| Length = 214 Score = 29.6 bits (65), Expect = 1.9 Identities = 18/41 (43%), Positives = 24/41 (58%) Frame = +1 Query: 205 QVGDQEEVRAAVGEGQVGGSAPHRAMDPGELVLGDSLHLGL 327 Q+ + +RAAV EG G + MD G+LV DS+ LGL Sbjct: 28 QISTGDMLRAAVREGTPLGMEAKKIMDAGQLV-SDSIILGL 67
>WDR23_MOUSE (Q91VU6) WD-repeat protein 23| Length = 549 Score = 29.6 bits (65), Expect = 1.9 Identities = 13/39 (33%), Positives = 20/39 (51%) Frame = +2 Query: 215 IKRKFAQRSERVKSVDLHPTEPWILASLYSGTLCIWDYQ 331 I +K V+ V HP E I++S + G L +W Y+ Sbjct: 475 IVKKLTNHKACVRDVSWHPFEEKIVSSSWDGNLRLWQYR 513
>HAT2_YARLI (Q6C7Q4) Histone acetyltransferase type B subunit 2 (EC 2.3.1.48)| Length = 452 Score = 28.9 bits (63), Expect = 3.3 Identities = 10/19 (52%), Positives = 13/19 (68%) Frame = +2 Query: 239 SERVKSVDLHPTEPWILAS 295 S R+ D HPT PW++AS Sbjct: 403 SSRISDFDWHPTLPWVIAS 421
>YRIQ_CAEEL (P90794) Hypothetical WD-repeat protein D2030.9| Length = 571 Score = 28.9 bits (63), Expect = 3.3 Identities = 11/38 (28%), Positives = 20/38 (52%) Frame = +2 Query: 215 IKRKFAQRSERVKSVDLHPTEPWILASLYSGTLCIWDY 328 + R+ + V+ D HPTE I++S + G +W + Sbjct: 476 VSRRLKGHTAVVRECDWHPTENEIVSSAWDGVTTVWTW 513
>YC47_SCHPO (O14053) Hypothetical WD-repeat protein C1672.07 in chromosome III| Length = 902 Score = 28.5 bits (62), Expect = 4.3 Identities = 13/41 (31%), Positives = 20/41 (48%) Frame = +2 Query: 212 EIKRKFAQRSERVKSVDLHPTEPWILASLYSGTLCIWDYQT 334 +I R+ S R+ S D T W++ + GT+ WD T Sbjct: 563 KIVRELWGHSNRLTSFDFSDTGRWLVTASLDGTIRTWDLPT 603
>TSSC1_PONPY (Q5RE10) Protein TSSC1| Length = 414 Score = 28.1 bits (61), Expect = 5.6 Identities = 14/41 (34%), Positives = 22/41 (53%), Gaps = 1/41 (2%) Frame = +2 Query: 200 PLRLEIKRKFAQRSERVKSVDLHPTEPWILASL-YSGTLCI 319 PL+ + + + + V +VD +PW+ ASL Y G L I Sbjct: 361 PLQDNVIATYEEHEDSVYAVDWSSADPWLFASLSYDGRLVI 401
>TSSC1_MACFA (Q4R571) Protein TSSC1| Length = 387 Score = 28.1 bits (61), Expect = 5.6 Identities = 14/41 (34%), Positives = 22/41 (53%), Gaps = 1/41 (2%) Frame = +2 Query: 200 PLRLEIKRKFAQRSERVKSVDLHPTEPWILASL-YSGTLCI 319 PL+ + + + + V +VD +PW+ ASL Y G L I Sbjct: 334 PLQDNVIATYEEHEDSVYAVDWSSADPWLFASLSYDGRLVI 374
>TSSC1_HUMAN (Q53HC9) Protein TSSC1 (Tumor-suppressing subchromosomal| transferable fragment candidate gene 1 protein) (Tumor-suppressing STF cDNA 1 protein) Length = 387 Score = 28.1 bits (61), Expect = 5.6 Identities = 14/41 (34%), Positives = 22/41 (53%), Gaps = 1/41 (2%) Frame = +2 Query: 200 PLRLEIKRKFAQRSERVKSVDLHPTEPWILASL-YSGTLCI 319 PL+ + + + + V +VD +PW+ ASL Y G L I Sbjct: 334 PLQDNVIATYEEHEDSVYAVDWSSADPWLFASLSYDGRLVI 374
>TBX6_MOUSE (P70327) T-box transcription factor TBX6 (T-box protein 6)| Length = 540 Score = 28.1 bits (61), Expect = 5.6 Identities = 12/28 (42%), Positives = 17/28 (60%) Frame = +1 Query: 247 GQVGGSAPHRAMDPGELVLGDSLHLGLP 330 G + S P +A PG+L+L LH+G P Sbjct: 317 GDIRDSDPEQAPTPGKLLLPQLLHVGAP 344
>TSSC1_RAT (Q5PPK9) Protein TSSC1| Length = 386 Score = 27.7 bits (60), Expect = 7.3 Identities = 14/41 (34%), Positives = 22/41 (53%), Gaps = 1/41 (2%) Frame = +2 Query: 200 PLRLEIKRKFAQRSERVKSVDLHPTEPWILASL-YSGTLCI 319 PL+ + + + + V +VD +PW+ ASL Y G L I Sbjct: 333 PLQDNVIATYEEHEDSVYAVDWASADPWLFASLSYDGRLVI 373
>TSCC1_MOUSE (Q8K0G5) Protein TSSC1| Length = 386 Score = 27.7 bits (60), Expect = 7.3 Identities = 14/41 (34%), Positives = 22/41 (53%), Gaps = 1/41 (2%) Frame = +2 Query: 200 PLRLEIKRKFAQRSERVKSVDLHPTEPWILASL-YSGTLCI 319 PL+ + + + + V +VD +PW+ ASL Y G L I Sbjct: 333 PLQDNVIATYEEHEDSVYAVDWASADPWLFASLSYDGRLVI 373
>GBB_ORYSA (Q40687) Guanine nucleotide-binding protein beta subunit| Length = 380 Score = 27.7 bits (60), Expect = 7.3 Identities = 14/45 (31%), Positives = 22/45 (48%) Frame = +2 Query: 200 PLRLEIKRKFAQRSERVKSVDLHPTEPWILASLYSGTLCIWDYQT 334 P L R S +V S+D P + WI+++ G L +W+ T Sbjct: 53 PTDLVCCRTLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALT 97
>GBB_MAIZE (P49178) Guanine nucleotide-binding protein beta subunit| Length = 380 Score = 27.7 bits (60), Expect = 7.3 Identities = 14/45 (31%), Positives = 22/45 (48%) Frame = +2 Query: 200 PLRLEIKRKFAQRSERVKSVDLHPTEPWILASLYSGTLCIWDYQT 334 P L R S +V S+D P + WI+++ G L +W+ T Sbjct: 53 PTDLVCCRTLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALT 97
>YZLL_CAEEL (Q93847) Hypothetical WD-repeat protein K04G11.4| Length = 395 Score = 27.7 bits (60), Expect = 7.3 Identities = 13/39 (33%), Positives = 19/39 (48%) Frame = +2 Query: 215 IKRKFAQRSERVKSVDLHPTEPWILASLYSGTLCIWDYQ 331 +K + + V P +ILAS + TL +WDYQ Sbjct: 267 VKTLIDEEHPPITHVKFSPNGKYILASNLNNTLKLWDYQ 305
>BOP1_MOUSE (P97452) Ribosome biogenesis protein BOP1 (Block of proliferation 1| protein) Length = 732 Score = 27.3 bits (59), Expect = 9.6 Identities = 10/22 (45%), Positives = 14/22 (63%) Frame = +2 Query: 248 VKSVDLHPTEPWILASLYSGTL 313 V V HPT+PW+ +S GT+ Sbjct: 707 VLDVAFHPTQPWVFSSGADGTI 728
>RNP2_PYRFU (Q8U151) Ribonuclease P protein component 2 (EC 3.1.26.5) (RNase P| component 2) Length = 120 Score = 27.3 bits (59), Expect = 9.6 Identities = 9/19 (47%), Positives = 11/19 (57%) Frame = +3 Query: 288 WRACTRGLSASGTTRRRPW 344 W AC R L GT + +PW Sbjct: 39 WNACLRTLGELGTAKAKPW 57
>WDR34_MOUSE (Q5U4F6) WD-repeat protein 34| Length = 535 Score = 27.3 bits (59), Expect = 9.6 Identities = 12/27 (44%), Positives = 16/27 (59%), Gaps = 1/27 (3%) Frame = +2 Query: 248 VKSVDLHPTEP-WILASLYSGTLCIWD 325 V + HPT+P I LYSG + +WD Sbjct: 219 VMCLAFHPTQPSHIAGGLYSGEVLVWD 245 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.309 0.131 0.373 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 27,635,505 Number of Sequences: 219361 Number of extensions: 297006 Number of successful extensions: 1162 Number of sequences better than 10.0: 32 Number of HSP's better than 10.0 without gapping: 1074 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1162 length of database: 80,573,946 effective HSP length: 90 effective length of database: 60,831,456 effective search space used: 1459954944 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.7 bits)
