ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl07g08
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1SYV_ARATH (P93736) Valyl-tRNA synthetase (EC 6.1.1.9) (Valine--t... 59 5e-09

>SYV_ARATH (P93736) Valyl-tRNA synthetase (EC 6.1.1.9) (Valine--tRNA ligase)|
           (ValRS)
          Length = 1108

 Score = 59.3 bits (142), Expect = 5e-09
 Identities = 25/36 (69%), Positives = 31/36 (86%)
 Frame = +2

Query: 350 ADDENPEDFIDPETPSGQKKSLAPQMAKQYSPSAVE 457
           A +ENPEDF+DPETP G++K L+ QMAKQYSP+ VE
Sbjct: 111 ASEENPEDFVDPETPLGERKRLSSQMAKQYSPATVE 146


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 34,032,196
Number of Sequences: 219361
Number of extensions: 346843
Number of successful extensions: 1225
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 1213
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1225
length of database: 80,573,946
effective HSP length: 103
effective length of database: 57,979,763
effective search space used: 3014947676
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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