ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl07g03 |
|---|---|
| Clone Library Name | barley_pub |
>COPB_RAT (P23514) Coatomer subunit beta (Beta-coat protein) (Beta-COP)| Length = 953 Score = 92.0 bits (227), Expect = 5e-19 Identities = 45/100 (45%), Positives = 68/100 (68%), Gaps = 1/100 (1%) Frame = +2 Query: 116 AMDKPCTLLVHFDKGSAAMAN-EIKADLEGSDVAAKVEAMKRAVMLLLNGETLPTLFITV 292 A + C L++ S + +K DLE DV +K EA+K+ ++++LNGE LP L +T+ Sbjct: 3 AAENVCYTLINVPMDSEPPSEISLKNDLEKGDVKSKTEALKKVIIMILNGEKLPGLLMTI 62 Query: 293 VRYVLPSEDHTIQKLLLLYLEIIDKRDAAGRVLPEMILIC 412 +R+VLP +DHTI+KLLL++ EI+ K GR+L EMIL+C Sbjct: 63 IRFVLPLQDHTIKKLLLVFWEIVPKTTPDGRLLHEMILVC 102
>COPB_MOUSE (Q9JIF7) Coatomer subunit beta (Beta-coat protein) (Beta-COP)| Length = 953 Score = 92.0 bits (227), Expect = 5e-19 Identities = 45/100 (45%), Positives = 68/100 (68%), Gaps = 1/100 (1%) Frame = +2 Query: 116 AMDKPCTLLVHFDKGSAAMAN-EIKADLEGSDVAAKVEAMKRAVMLLLNGETLPTLFITV 292 A + C L++ S + +K DLE DV +K EA+K+ ++++LNGE LP L +T+ Sbjct: 3 AAENVCYTLINVPMDSEPPSEISLKNDLEKGDVKSKTEALKKVIIMILNGEKLPGLLMTI 62 Query: 293 VRYVLPSEDHTIQKLLLLYLEIIDKRDAAGRVLPEMILIC 412 +R+VLP +DHTI+KLLL++ EI+ K GR+L EMIL+C Sbjct: 63 IRFVLPLQDHTIKKLLLVFWEIVPKTTPDGRLLHEMILVC 102
>COPB_HUMAN (P53618) Coatomer subunit beta (Beta-coat protein) (Beta-COP)| Length = 953 Score = 92.0 bits (227), Expect = 5e-19 Identities = 45/100 (45%), Positives = 68/100 (68%), Gaps = 1/100 (1%) Frame = +2 Query: 116 AMDKPCTLLVHFDKGSAAMAN-EIKADLEGSDVAAKVEAMKRAVMLLLNGETLPTLFITV 292 A + C L++ S + +K DLE DV +K EA+K+ ++++LNGE LP L +T+ Sbjct: 3 AAENVCYTLINVPMDSEPPSEISLKNDLEKGDVKSKTEALKKVIIMILNGEKLPGLLMTI 62 Query: 293 VRYVLPSEDHTIQKLLLLYLEIIDKRDAAGRVLPEMILIC 412 +R+VLP +DHTI+KLLL++ EI+ K GR+L EMIL+C Sbjct: 63 IRFVLPLQDHTIKKLLLVFWEIVPKTTPDGRLLHEMILVC 102
>COPB_DROME (P45437) Coatomer subunit beta (Beta-coat protein) (Beta-COP)| Length = 964 Score = 92.0 bits (227), Expect = 5e-19 Identities = 42/95 (44%), Positives = 63/95 (66%) Frame = +2 Query: 128 PCTLLVHFDKGSAAMANEIKADLEGSDVAAKVEAMKRAVMLLLNGETLPTLFITVVRYVL 307 PC +++ ++K DLE D K+E +KR + LLLNGE P L +T++R+VL Sbjct: 6 PCYTIINSPDLEVTNEMQLKRDLEKGDTNVKIETLKRVIKLLLNGERYPGLIMTIIRFVL 65 Query: 308 PSEDHTIQKLLLLYLEIIDKRDAAGRVLPEMILIC 412 P ++HTI+KLLL++ EI+ K A G++L EMIL+C Sbjct: 66 PVQNHTIKKLLLIFWEIVPKTSADGKLLQEMILVC 100
>COPB_SCHPO (Q9UUF7) Coatomer subunit beta (Beta-coat protein) (Beta-COP)| Length = 940 Score = 66.6 bits (161), Expect = 2e-11 Identities = 33/94 (35%), Positives = 55/94 (58%) Frame = +2 Query: 131 CTLLVHFDKGSAAMANEIKADLEGSDVAAKVEAMKRAVMLLLNGETLPTLFITVVRYVLP 310 C LV D A + +K LE + K+ AMK + +++NG++LP++ + V+R+V+P Sbjct: 3 CWTLVQQDFLEAPSVDALKTSLESKNDYVKISAMKTILRVVINGDSLPSILMHVIRFVMP 62 Query: 311 SEDHTIQKLLLLYLEIIDKRDAAGRVLPEMILIC 412 S + ++KLL Y E+ K + G + EMIL C Sbjct: 63 SRNKELKKLLYYYWEVCPKYNNDGTMKQEMILAC 96
>COPB_YEAST (P41810) Coatomer subunit beta (Beta-coat protein) (Beta-COP)| Length = 973 Score = 58.9 bits (141), Expect = 4e-09 Identities = 29/76 (38%), Positives = 49/76 (64%) Frame = +2 Query: 185 KADLEGSDVAAKVEAMKRAVMLLLNGETLPTLFITVVRYVLPSEDHTIQKLLLLYLEIID 364 KA +GSD K++ MK ++ +L G +P L + ++R+V+PS++ ++KLL Y EI+ Sbjct: 30 KALEKGSD-EQKIDTMKSILVTMLEGNPMPELLMHIIRFVMPSKNKELKKLLYFYWEIVP 88 Query: 365 KRDAAGRVLPEMILIC 412 K G++ EMIL+C Sbjct: 89 KLAEDGKLRHEMILVC 104
>MAM1_SCHPO (P78966) Mating factor M secretion protein mam1 (Multiple drug| resistance protein homolog) (P-glycoprotein) Length = 1336 Score = 31.2 bits (69), Expect = 0.99 Identities = 21/77 (27%), Positives = 40/77 (51%) Frame = +2 Query: 89 PARVHGRSGAMDKPCTLLVHFDKGSAAMANEIKADLEGSDVAAKVEAMKRAVMLLLNGET 268 P +H +SG + P + FD S A + + L ++V+ +EA ++ ++ ++G Sbjct: 1082 PGNLH-KSGYLKFPLVGKIEFDGVSFAYPDSERNHLALNNVSLSIEAREKVAIVGISGSG 1140 Query: 269 LPTLFITVVRYVLPSED 319 TL + ++R PSED Sbjct: 1141 KSTL-VELLRKTYPSED 1156
>RSNL2_MOUSE (Q8CI96) Restin-like protein 2| Length = 704 Score = 29.6 bits (65), Expect = 2.9 Identities = 26/83 (31%), Positives = 44/83 (53%), Gaps = 5/83 (6%) Frame = +2 Query: 152 DKG---SAAMANEIKADLEGSDVAAKVEAMKRAVMLLLNGETLPTLFITVVRYVLPSEDH 322 DKG + + + + LE +D AA + +K+ +LL+ LP T + VLP+ DH Sbjct: 218 DKGQIPAEVVPDPVDMPLEMADAAAIAKEIKQ---MLLDAVPLPC---TSAKAVLPNSDH 271 Query: 323 TIQKLLL--LYLEIIDKRDAAGR 385 T + +L L L++ D+ AG+ Sbjct: 272 TTSRAMLTSLGLKLGDRVVIAGQ 294
>PPIL4_ASPOR (Q2U256) Peptidyl-prolyl cis-trans isomerase-like 4 (EC 5.2.1.8)| (PPIase) (Rotamase) Length = 461 Score = 29.6 bits (65), Expect = 2.9 Identities = 16/38 (42%), Positives = 21/38 (55%) Frame = +2 Query: 5 PLRPSSGSQISIHLRRRSNHRYPTRRRPPARVHGRSGA 118 P R S+ + + RR ++R P RRRP R H RS A Sbjct: 394 PQRSSNRDRRASRSPRRDSYRDPYRRRPGDRSHSRSPA 431
>VGLC_HHV2H (Q89730) Glycoprotein C precursor| Length = 480 Score = 29.3 bits (64), Expect = 3.7 Identities = 13/39 (33%), Positives = 19/39 (48%) Frame = +3 Query: 3 NHSAPLPAPRSRSTSAADPTTDTPHAVALRRGCTADPAP 119 +++AP +PR+ S PT P + TA PAP Sbjct: 42 SNAAPSASPRNASAPRTTPTPPQPRKATKSKASTAKPAP 80
>VGLC_HHV23 (P06475) Glycoprotein C precursor| Length = 480 Score = 29.3 bits (64), Expect = 3.7 Identities = 13/39 (33%), Positives = 19/39 (48%) Frame = +3 Query: 3 NHSAPLPAPRSRSTSAADPTTDTPHAVALRRGCTADPAP 119 +++AP +PR+ S PT P + TA PAP Sbjct: 42 SNAAPSASPRNASAPRTTPTPPQPRKATKSKASTAKPAP 80
>GR43A_DROME (Q9V4K2) Putative gustatory receptor 43a| Length = 427 Score = 28.9 bits (63), Expect = 4.9 Identities = 20/63 (31%), Positives = 32/63 (50%) Frame = +2 Query: 224 EAMKRAVMLLLNGETLPTLFITVVRYVLPSEDHTIQKLLLLYLEIIDKRDAAGRVLPEMI 403 E++ + V LL N + LFI V + H + L+LE++ KRD G + +M+ Sbjct: 279 ESLGKCVHLLSNSFGIAVLFILVSCLL-----HLVATAYFLFLELLSKRD-NGYLWVQML 332 Query: 404 LIC 412 IC Sbjct: 333 WIC 335
>FREM2_MOUSE (Q6NVD0) FRAS1-related extracellular matrix protein 2 precursor| (ECM3 homolog) (NV domain-containing protein 1) Length = 3160 Score = 28.9 bits (63), Expect = 4.9 Identities = 18/54 (33%), Positives = 27/54 (50%) Frame = +2 Query: 248 LLLNGETLPTLFITVVRYVLPSEDHTIQKLLLLYLEIIDKRDAAGRVLPEMILI 409 L L+ T L + + Y PSED ++L L LEI+D AA M+++ Sbjct: 371 LPLSSFTQRDLRLLKIAYQPPSEDSDQERLFELELEIVDPEGAASDPFAFMVVV 424
>ISPG_AQUAE (O67496) 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (EC| 1.17.4.3) (1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase) Length = 357 Score = 28.9 bits (63), Expect = 4.9 Identities = 12/25 (48%), Positives = 14/25 (56%) Frame = -3 Query: 76 CGVSVVGSAAEVDRDLGAGRGAEWL 2 C V+ +G A E D L GRG WL Sbjct: 300 CVVNAIGEAREADIGLACGRGFAWL 324
>ANPRC_MOUSE (P70180) Atrial natriuretic peptide clearance receptor precursor| (ANP-C) (ANPRC) (NPR-C) (Atrial natriuretic peptide C-type receptor) (EF-2) Length = 536 Score = 28.5 bits (62), Expect = 6.4 Identities = 11/44 (25%), Positives = 26/44 (59%) Frame = +2 Query: 191 DLEGSDVAAKVEAMKRAVMLLLNGETLPTLFITVVRYVLPSEDH 322 DL+ D+ ++ +R V++ +G+T+ + + V R+ + S D+ Sbjct: 236 DLDLDDIVRYIQGSERVVIMCASGDTIRRIMLAVHRHGMTSGDY 279
>POTE8_HUMAN (Q6S8J7) Prostate, ovary, testis expressed protein on chromosome 8| Length = 498 Score = 28.5 bits (62), Expect = 6.4 Identities = 24/91 (26%), Positives = 42/91 (46%), Gaps = 3/91 (3%) Frame = +2 Query: 119 MDKPCTLLVHFDKGSAAMANEIKADLEGSDVAAKVEAMKRAVMLLLNGE--TLPTLF-IT 289 +D+ C L V K A+ ++ + + A+MLL +G LP ++ T Sbjct: 119 LDRQCQLHVFDSKKRTALIKAVQCQED-----------ECALMLLQHGTDPNLPDMYGNT 167 Query: 290 VVRYVLPSEDHTIQKLLLLYLEIIDKRDAAG 382 + Y + +ED + K LLLY I+ ++ G Sbjct: 168 ALHYAVYNEDKLMAKTLLLYGADIESKNKGG 198
>SOCS1_MOUSE (O35716) Suppressor of cytokine signaling 1 (SOCS-1) (JAK-binding| protein) (JAB) (STAT-induced STAT inhibitor 1) (SSI-1) Length = 212 Score = 28.5 bits (62), Expect = 6.4 Identities = 14/39 (35%), Positives = 20/39 (51%) Frame = +3 Query: 3 NHSAPLPAPRSRSTSAADPTTDTPHAVALRRGCTADPAP 119 N +P PR RS ++ ++ +P A R C A PAP Sbjct: 11 NAISPAAEPRRRSEPSSSSSSSSPAAPVRPRPCPAVPAP 49
>ANPRC_RAT (P41740) Atrial natriuretic peptide clearance receptor precursor| (ANP-C) (ANPRC) (NPR-C) (Atrial natriuretic peptide C-type receptor) Length = 535 Score = 28.5 bits (62), Expect = 6.4 Identities = 11/44 (25%), Positives = 26/44 (59%) Frame = +2 Query: 191 DLEGSDVAAKVEAMKRAVMLLLNGETLPTLFITVVRYVLPSEDH 322 DL+ D+ ++ +R V++ +G+T+ + + V R+ + S D+ Sbjct: 236 DLDLDDIVRYIQGSERVVIMCASGDTIRRIMLAVHRHGMTSGDY 279
>DRD2_RAT (P61169) D(2) dopamine receptor (Dopamine D2 receptor)| Length = 444 Score = 28.1 bits (61), Expect = 8.3 Identities = 23/69 (33%), Positives = 29/69 (42%), Gaps = 5/69 (7%) Frame = -1 Query: 294 TTVMKSVGRVSPLRRSMTARFMASTL-----AATSLPSRSALISFAMAAEPLSKWTSSVH 130 T +MKS G RR M A A L ++TS P R+ + L+ S H Sbjct: 254 TVIMKSNGSFPVNRRRMDAARRAQELEMEMLSSTSPPERTRYSPIPPSHHQLTLPDPSHH 313 Query: 129 GLSMAPDLP 103 GL PD P Sbjct: 314 GLHSNPDSP 322
>DRD2_MOUSE (P61168) D(2) dopamine receptor (Dopamine D2 receptor)| Length = 444 Score = 28.1 bits (61), Expect = 8.3 Identities = 23/69 (33%), Positives = 29/69 (42%), Gaps = 5/69 (7%) Frame = -1 Query: 294 TTVMKSVGRVSPLRRSMTARFMASTL-----AATSLPSRSALISFAMAAEPLSKWTSSVH 130 T +MKS G RR M A A L ++TS P R+ + L+ S H Sbjct: 254 TVIMKSNGSFPVNRRRMDAARRAQELEMEMLSSTSPPERTRYSPIPPSHHQLTLPDPSHH 313 Query: 129 GLSMAPDLP 103 GL PD P Sbjct: 314 GLHSNPDSP 322
>FREM2_HUMAN (Q5SZK8) FRAS1-related extracellular matrix protein 2 precursor| (ECM3 homolog) Length = 3169 Score = 28.1 bits (61), Expect = 8.3 Identities = 17/54 (31%), Positives = 27/54 (50%) Frame = +2 Query: 248 LLLNGETLPTLFITVVRYVLPSEDHTIQKLLLLYLEIIDKRDAAGRVLPEMILI 409 L L+ T L + + Y PSED ++L L LE++D AA M+++ Sbjct: 378 LPLSSFTQRDLRLLKIAYQPPSEDSDQERLFELELEVVDLEGAASDPFAFMVVV 431
>NU2C_PROMM (Q7V626) NAD(P)H-quinone oxidoreductase chain 2 (EC 1.6.5.-)| (NAD(P)H dehydrogenase I, chain 2) (NDH-1, chain 2) Length = 523 Score = 28.1 bits (61), Expect = 8.3 Identities = 16/46 (34%), Positives = 23/46 (50%) Frame = -1 Query: 219 LAATSLPSRSALISFAMAAEPLSKWTSSVHGLSMAPDLPCTRAGGR 82 LAA SL A ++F +AA P +WT V+ S P + G + Sbjct: 222 LAALSLVFVLATVAFKIAAVPFHQWTPDVYEGSPTPVVAFLSVGSK 267 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 44,602,934 Number of Sequences: 219361 Number of extensions: 731300 Number of successful extensions: 3098 Number of sequences better than 10.0: 22 Number of HSP's better than 10.0 without gapping: 2853 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3091 length of database: 80,573,946 effective HSP length: 100 effective length of database: 58,637,846 effective search space used: 2169600302 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
